Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:59:04 (2595906): wrapper (7.7.26015): starting
16:59:04 (2595906): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 16:59:04] Arguments: --nthreads 4
[2025-11-25 16:59:04] Threads: 4
[2025-11-25 16:59:04] Checking for CVMFS
[2025-11-25 16:59:04] No cvmfs_config command found, will try listing directly
[2025-11-25 16:59:04] CVMFS is ok
[2025-11-25 16:59:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:59:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:59:04] Further information can be found at the LHC@home message board.
[2025-11-25 16:59:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:59:04] Checking for apptainer binary...
[2025-11-25 16:59:04] which: no apptainer in ((null))
[2025-11-25 16:59:04] apptainer is not installed, using version from CVMFS
[2025-11-25 16:59:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:59:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-25 16:59:04] apptainer works
[2025-11-25 16:59:04] Set ATHENA_PROC_NUMBER=4
[2025-11-25 16:59:04] Set ATHENA_CORE_NUMBER=4
[2025-11-25 16:59:04] Starting ATLAS job with PandaID=6892548723
[2025-11-25 16:59:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:33:09]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:33:09] 2025-11-26 07:28:46,778 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:33:09] 2025-11-26 07:28:47,207 | INFO     | time since job start (55768s) is within the limit (172800.0s)
[2025-11-26 08:33:09] 2025-11-26 07:28:47,719 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 08:33:09] 2025-11-26 07:28:47,737 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2675.38515625
[2025-11-26 08:33:09] 2025-11-26 07:28:47,760 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6892548723/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:33:09] 2025-11-26 07:28:47,761 | INFO     | extracted standard info from prmon json
[2025-11-26 08:33:09] 2025-11-26 07:28:47,761 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:33:09] 2025-11-26 07:28:47,761 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:33:09] 2025-11-26 07:28:47,777 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:33:09] 2025-11-26 07:28:47,778 | INFO     | sum of square deviations: 236764950778.31506
[2025-11-26 08:33:09] 2025-11-26 07:28:47,797 | INFO     | sum of deviations: 640162140702.7482
[2025-11-26 08:33:09] 2025-11-26 07:28:47,797 | INFO     | mean x: 1764114240.514223
[2025-11-26 08:33:09] 2025-11-26 07:28:47,797 | INFO     | mean y: 2276630.0962800877
[2025-11-26 08:33:09] 2025-11-26 07:28:47,797 | INFO     | intersect: -4767513598.311212
[2025-11-26 08:33:09] 2025-11-26 07:28:47,798 | INFO     | chi2: 4.522207286032115
[2025-11-26 08:33:09] 2025-11-26 07:28:47,799 | INFO     | sum of square deviations: 232900538100.81403
[2025-11-26 08:33:09] 2025-11-26 07:28:47,817 | INFO     | sum of deviations: 837076393590.5122
[2025-11-26 08:33:09] 2025-11-26 07:28:47,817 | INFO     | mean x: 1764114088.0143015
[2025-11-26 08:33:09] 2025-11-26 07:28:47,817 | INFO     | mean y: 2284394.191419142
[2025-11-26 08:33:09] 2025-11-26 07:28:47,817 | INFO     | intersect: -6338182960.323747
[2025-11-26 08:33:09] 2025-11-26 07:28:47,818 | INFO     | chi2: 2.2650976984511626
[2025-11-26 08:33:09] 2025-11-26 07:28:47,818 | INFO     | current chi2=2.2650976984511626 (change=49.91167907213273 %)
[2025-11-26 08:33:09] 2025-11-26 07:28:47,819 | INFO     | sum of square deviations: 229078405285.81238
[2025-11-26 08:33:09] 2025-11-26 07:28:47,836 | INFO     | sum of deviations: 856066333723.395
[2025-11-26 08:33:09] 2025-11-26 07:28:47,836 | INFO     | mean x: 1764113935.5143805
[2025-11-26 08:33:09] 2025-11-26 07:28:47,836 | INFO     | mean y: 2285147.392699115
[2025-11-26 08:33:09] 2025-11-26 07:28:47,837 | INFO     | intersect: -6590211195.341695
[2025-11-26 08:33:09] 2025-11-26 07:28:47,837 | INFO     | chi2: 2.138701153561775
[2025-11-26 08:33:09] 2025-11-26 07:28:47,838 | INFO     | current chi2=2.138701153561775 (change=5.580180712550081 %)
[2025-11-26 08:33:09] 2025-11-26 07:28:47,838 | INFO     | right removable region: 903
[2025-11-26 08:33:09] 2025-11-26 07:28:47,839 | INFO     | sum of square deviations: 232900530170.81403
[2025-11-26 08:33:09] 2025-11-26 07:28:47,857 | INFO     | sum of deviations: 462426227737.0541
[2025-11-26 08:33:09] 2025-11-26 07:28:47,857 | INFO     | mean x: 1764114393.0143015
[2025-11-26 08:33:09] 2025-11-26 07:28:47,857 | INFO     | mean y: 2283632.1496149614
[2025-11-26 08:33:09] 2025-11-26 07:28:47,857 | INFO     | intersect: -3500382349.1598387
[2025-11-26 08:33:09] 2025-11-26 07:28:47,858 | INFO     | chi2: 2.5222984203405474
[2025-11-26 08:33:09] 2025-11-26 07:28:47,858 | INFO     | current chi2=2.5222984203405474 (change=44.2241750365745 %)
[2025-11-26 08:33:09] 2025-11-26 07:28:47,859 | INFO     | sum of square deviations: 229078389425.81235
[2025-11-26 08:33:09] 2025-11-26 07:28:47,876 | INFO     | sum of deviations: 432762445804.4251
[2025-11-26 08:33:09] 2025-11-26 07:28:47,877 | INFO     | mean x: 1764114545.5143805
[2025-11-26 08:33:09] 2025-11-26 07:28:47,877 | INFO     | mean y: 2284815.0442477874
[2025-11-26 08:33:09] 2025-11-26 07:28:47,877 | INFO     | intersect: -3330384527.1383243
[2025-11-26 08:33:09] 2025-11-26 07:28:47,878 | INFO     | chi2: 2.4983674568891963
[2025-11-26 08:33:09] 2025-11-26 07:28:47,878 | INFO     | current chi2=2.4983674568891963 (change=0.9487760551394279 %)
[2025-11-26 08:33:09] 2025-11-26 07:28:47,878 | INFO     | left removable region: 20
[2025-11-26 08:33:09] 2025-11-26 07:28:47,879 | INFO     | sum of square deviations: 213481863370.8086
[2025-11-26 08:33:09] 2025-11-26 07:28:47,896 | INFO     | sum of deviations: 602562950634.4094
[2025-11-26 08:33:09] 2025-11-26 07:28:47,896 | INFO     | mean x: 1764114515.0147226
[2025-11-26 08:33:09] 2025-11-26 07:28:47,896 | INFO     | mean y: 2295193.122310306
[2025-11-26 08:33:09] 2025-11-26 07:28:47,896 | INFO     | intersect: -4977003894.116282
[2025-11-26 08:33:09] 2025-11-26 07:28:47,897 | INFO     | chi2: 0.07958637609921576
[2025-11-26 08:33:09] 2025-11-26 07:28:47,897 | INFO     | current memory leak: 2.82 B/s (using 883 data points, chi2=0.08)
[2025-11-26 08:33:09] 2025-11-26 07:28:47,899 | INFO     | could have reported an average CPU frequency of 2674 MHz (34 samples)
[2025-11-26 08:33:09] 2025-11-26 07:28:47,899 | INFO     | ..............................
[2025-11-26 08:33:09] 2025-11-26 07:28:47,899 | INFO     | . Timing measurements:
[2025-11-26 08:33:09] 2025-11-26 07:28:47,899 | INFO     | . get job = 0 s
[2025-11-26 08:33:09] 2025-11-26 07:28:47,899 | INFO     | . initial setup = 1 s
[2025-11-26 08:33:09] 2025-11-26 07:28:47,899 | INFO     | . payload setup = 9 s
[2025-11-26 08:33:09] 2025-11-26 07:28:47,899 | INFO     | . stage-in = 0 s
[2025-11-26 08:33:09] 2025-11-26 07:28:47,899 | INFO     | . payload execution = 55724 s
[2025-11-26 08:33:09] 2025-11-26 07:28:47,900 | INFO     | . stage-out = 2 s
[2025-11-26 08:33:09] 2025-11-26 07:28:47,900 | INFO     | . log creation = 0 s
[2025-11-26 08:33:09] 2025-11-26 07:28:47,900 | INFO     | ..............................
[2025-11-26 08:33:09] 2025-11-26 07:28:47,998 | INFO     | 
[2025-11-26 08:33:09] 2025-11-26 07:28:47,999 | INFO     | job summary report
[2025-11-26 08:33:09] 2025-11-26 07:28:47,999 | INFO     | --------------------------------------------------
[2025-11-26 08:33:09] 2025-11-26 07:28:47,999 | INFO     | PanDA job id: 6892548723
[2025-11-26 08:33:09] 2025-11-26 07:28:47,999 | INFO     | task id: 47493029
[2025-11-26 08:33:09] 2025-11-26 07:28:47,999 | INFO     | errors: (none)
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | pilot state: finished 
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | transexitcode: 0
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | exeerrorcode: 0
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | exeerrordiag: 
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | exitcode: 0
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | exitmsg: OK
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | cpuconsumptiontime: 220108 s
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | nevents: 1000
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | neventsw: 0
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | pid: 2607395
[2025-11-26 08:33:09] 2025-11-26 07:28:48,000 | INFO     | pgrp: 2607395
[2025-11-26 08:33:09] 2025-11-26 07:28:48,001 | INFO     | corecount: 4
[2025-11-26 08:33:09] 2025-11-26 07:28:48,001 | INFO     | event service: False
[2025-11-26 08:33:09] 2025-11-26 07:28:48,001 | INFO     | sizes: {0: 2283476, 1: 2284344, 8: 2284606, 12: 2284634, 55737: 2337443, 55740: 2346461, 55741: 2346645, 55750: 2346919}
[2025-11-26 08:33:09] 2025-11-26 07:28:48,001 | INFO     | --------------------------------------------------
[2025-11-26 08:33:09] 2025-11-26 07:28:48,001 | INFO     | 
[2025-11-26 08:33:09] 2025-11-26 07:28:48,001 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2025-11-26 08:33:09] 2025-11-26 07:28:48,034 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,035 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,035 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:33:09] 2025-11-26 07:28:48,037 | INFO     | job 6892548723 has completed (purged errors)
[2025-11-26 08:33:09] 2025-11-26 07:28:48,037 | INFO     | overall cleanup function is called
[2025-11-26 08:33:09] 2025-11-26 07:28:49,053 | INFO     | --- collectZombieJob: --- 10, [2607395]
[2025-11-26 08:33:09] 2025-11-26 07:28:49,054 | INFO     | zombie collector waiting for pid 2607395
[2025-11-26 08:33:09] 2025-11-26 07:28:49,054 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:33:09] 2025-11-26 07:28:49,054 | INFO     | collected zombie processes
[2025-11-26 08:33:09] 2025-11-26 07:28:49,054 | INFO     | will attempt to kill all subprocesses of pid=2607395
[2025-11-26 08:33:09] 2025-11-26 07:28:49,780 | INFO     | process IDs to be killed: [2607395] (in reverse order)
[2025-11-26 08:33:09] 2025-11-26 07:28:50,043 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:33:09] 2025-11-26 07:28:50,043 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:33:09] 2025-11-26 07:28:50,078 | INFO     | did not find any defunct processes belonging to 2607395
[2025-11-26 08:33:09] 2025-11-26 07:28:50,112 | INFO     | did not find any defunct processes belonging to 2607395
[2025-11-26 08:33:09] 2025-11-26 07:28:50,114 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:33:09] 2025-11-26 07:28:50,114 | INFO     | ready for new job
[2025-11-26 08:33:09] 2025-11-26 07:28:50,114 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:33:09] 2025-11-26 07:28:50,121 | INFO     | ***************************************
[2025-11-26 08:33:09] 2025-11-26 07:28:50,121 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:33:09] 2025-11-26 07:28:50,122 | INFO     | ***************************************
[2025-11-26 08:33:09] 2025-11-26 07:28:50,122 | INFO     | 
[2025-11-26 08:33:09] 2025-11-26 07:28:50,130 | INFO     | architecture information:
[2025-11-26 08:33:09] 2025-11-26 07:28:50,131 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:33:09] 2025-11-26 07:28:50,156 | INFO     | cat /etc/os-release:
[2025-11-26 08:33:09] NAME="CentOS Linux"
[2025-11-26 08:33:09] VERSION="7 (Core)"
[2025-11-26 08:33:09] ID="centos"
[2025-11-26 08:33:09] ID_LIKE="rhel fedora"
[2025-11-26 08:33:09] VERSION_ID="7"
[2025-11-26 08:33:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:33:09] ANSI_COLOR="0;31"
[2025-11-26 08:33:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:33:09] HOME_URL="https://www.centos.org/"
[2025-11-26 08:33:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:33:09] 
[2025-11-26 08:33:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:33:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:33:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:33:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:33:09] 
[2025-11-26 08:33:09] 2025-11-26 07:28:50,157 | INFO     | ***************************************
[2025-11-26 08:33:09] 2025-11-26 07:28:50,660 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2025-11-26 08:33:09] 2025-11-26 07:28:50,684 | INFO     | sufficient remaining disk space (3293537370112 B)
[2025-11-26 08:33:09] 2025-11-26 07:28:50,684 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:33:09] 2025-11-26 07:28:50,684 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:33:09] 2025-11-26 07:28:50,684 | INFO     | update_server=False
[2025-11-26 08:33:09] 2025-11-26 07:28:50,684 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:33:09] 2025-11-26 07:28:50,685 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:33:09] 2025-11-26 07:28:50,685 | INFO     | aborting loop
[2025-11-26 08:33:09] 2025-11-26 07:28:50,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:33:09] 2025-11-26 07:28:51,148 | INFO     | all payload control threads have been joined
[2025-11-26 08:33:09] 2025-11-26 07:28:51,541 | INFO     | all data control threads have been joined
[2025-11-26 08:33:09] 2025-11-26 07:28:51,631 | INFO     | all job control threads have been joined
[2025-11-26 08:33:09] 2025-11-26 07:28:51,689 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:51,690 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:51,746 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:51,982 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,117 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,140 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,153 | INFO     | [payload] control thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,265 | INFO     | [job] validate thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,549 | INFO     | [data] control thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,636 | INFO     | [job] control thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,680 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,763 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,837 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:52,943 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:53,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:33:09] 2025-11-26 07:28:54,014 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:28:54,050 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:33:09] 2025-11-26 07:28:58,056 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:33:09] 2025-11-26 07:29:18,258 [wrapper] supervise_pilot (15 min periods counter: 63)
[2025-11-26 08:33:09] 2025-11-26 07:29:21,311 | INFO     | PID=2599956 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 08:33:09] 2025-11-26 07:29:21,311 | INFO     | .. there are 7 such processes running
[2025-11-26 08:33:09] 2025-11-26 07:29:21,312 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:33:09] 2025-11-26 07:29:21,312 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:33:09] 2025-11-26 07:29:21,313 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:33:09] 2025-11-26 07:29:50,369 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:33:09] 2025-11-26 07:29:51,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23009273034560)>', '<ExcThread(monitor, started 23009033156352)>']
[2025-11-26 08:33:09] 2025-11-26 07:29:51,456 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:33:09] 2025-11-26 07:29:51,456 | INFO     | [monitor] control thread has ended
[2025-11-26 08:33:09] 2025-11-26 07:29:56,180 | INFO     | all workflow threads have been joined
[2025-11-26 08:33:09] 2025-11-26 07:29:56,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:33:09] 2025-11-26 07:29:56,181 | INFO     | traces error code: 0
[2025-11-26 08:33:09] 2025-11-26 07:29:56,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:33:09] 2025-11-26 07:29:56,336 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:33:09] 2025-11-26 07:29:56,341 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:33:09] 2025-11-26 07:29:56,346 [wrapper] pilotpid: 2599956
[2025-11-26 08:33:09] 2025-11-26 07:29:56,350 [wrapper] Pilot exit status: 0
[2025-11-26 08:33:09] 2025-11-26 07:29:56,366 [wrapper] pandaids: 6892548723
[2025-11-26 08:33:09] 2025-11-26 07:29:56,551 [wrapper] cleanup supervisor_pilot 3812814 2599957
[2025-11-26 08:33:09] 2025-11-26 07:29:56,557 [wrapper] Test setup, not cleaning
[2025-11-26 08:33:09] 2025-11-26 07:29:56,561 [wrapper] apfmon messages muted
[2025-11-26 08:33:09] 2025-11-26 07:29:56,564 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:33:09] 2025-11-26 07:29:56,568 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:33:09]  *** Error codes and diagnostics ***
[2025-11-26 08:33:09]     "exeErrorCode": 0,
[2025-11-26 08:33:09]     "exeErrorDiag": "",
[2025-11-26 08:33:09]     "pilotErrorCode": 0,
[2025-11-26 08:33:09]     "pilotErrorDiag": "",
[2025-11-26 08:33:09]  *** Listing of results directory ***
[2025-11-26 08:33:09] total 1309432
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc    576529 Nov 19 09:32 pilot3.tar.gz
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc      5112 Nov 19 09:45 queuedata.json
[2025-11-26 08:33:09] -rwx------ 1 boinc boinc     36292 Nov 19 09:45 runpilot2-wrapper.sh
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc       100 Nov 25 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:33:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 16:58 run_atlas
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc       105 Nov 25 16:58 job.xml
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc      6687 Nov 25 16:59 init_data.xml
[2025-11-26 08:33:09] -rw-r--r-- 2 boinc boinc 408329601 Nov 25 16:59 EVNT.47493027._000340.pool.root.1
[2025-11-26 08:33:09] -rw-r--r-- 2 boinc boinc     15120 Nov 25 16:59 start_atlas.sh
[2025-11-26 08:33:09] drwxrwx--x 2 boinc boinc      4096 Nov 25 16:59 shared
[2025-11-26 08:33:09] -rw-r--r-- 2 boinc boinc    590104 Nov 25 16:59 input.tar.gz
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc         0 Nov 25 16:59 boinc_lockfile
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc      2773 Nov 25 16:59 pandaJob.out
[2025-11-26 08:33:09] -rw------- 1 boinc boinc    991909 Nov 25 16:59 agis_schedconf.cvmfs.json
[2025-11-26 08:33:09] drwx------ 5 boinc boinc      4096 Nov 25 16:59 pilot3
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc       532 Nov 26 08:21 boinc_task_state.xml
[2025-11-26 08:33:09] -rw------- 1 boinc boinc 909911409 Nov 26 08:27 HITS.47493029._003357.pool.root.1
[2025-11-26 08:33:09] -rw------- 1 boinc boinc      1039 Nov 26 08:28 memory_monitor_summary.json
[2025-11-26 08:33:09] -rw------- 1 boinc boinc   1516240 Nov 26 08:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:33:09] -rw------- 1 boinc boinc   1659188 Nov 26 08:28 log.47493029._003357.job.log.tgz.1
[2025-11-26 08:33:09] -rw------- 1 boinc boinc      8593 Nov 26 08:28 heartbeat.json
[2025-11-26 08:33:09] -rw------- 1 boinc boinc        95 Nov 26 08:29 pilot_heartbeat.json
[2025-11-26 08:33:09] -rw------- 1 boinc boinc      4836 Nov 26 08:29 pilotlog.txt
[2025-11-26 08:33:09] -rw------- 1 boinc boinc   7688031 Nov 26 08:29 log.47493029._003357.job.log.1
[2025-11-26 08:33:09] -rw------- 1 boinc boinc       353 Nov 26 08:29 output.list
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc       620 Nov 26 08:29 runtime_log
[2025-11-26 08:33:09] -rw------- 1 boinc boinc   9369600 Nov 26 08:29 result.tar.gz
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc      9085 Nov 26 08:29 runtime_log.err
[2025-11-26 08:33:09] -rw------- 1 boinc boinc       671 Nov 26 08:29 LNeMDmF0sf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmd8FKDm9fYPIn.diag
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc      8192 Nov 26 08:33 boinc_mmap_file
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc        28 Nov 26 08:33 wrapper_checkpoint.txt
[2025-11-26 08:33:09] -rw-r--r-- 1 boinc boinc     21106 Nov 26 08:33 stderr.txt
[2025-11-26 08:33:09] HITS file was successfully produced:
[2025-11-26 08:33:09] -rw------- 1 boinc boinc 909911409 Nov 26 08:27 shared/HITS.pool.root.1
[2025-11-26 08:33:09]  *** Contents of shared directory: ***
[2025-11-26 08:33:09] total 1297104
[2025-11-26 08:33:09] -rw-r--r-- 2 boinc boinc 408329601 Nov 25 16:59 ATLAS.root_0
[2025-11-26 08:33:09] -rw-r--r-- 2 boinc boinc     15120 Nov 25 16:59 start_atlas.sh
[2025-11-26 08:33:09] -rw-r--r-- 2 boinc boinc    590104 Nov 25 16:59 input.tar.gz
[2025-11-26 08:33:09] -rw------- 1 boinc boinc 909911409 Nov 26 08:27 HITS.pool.root.1
[2025-11-26 08:33:09] -rw------- 1 boinc boinc   9369600 Nov 26 08:29 result.tar.gz
08:33:11 (2595906): run_atlas exited; CPU time 223021.194191
08:33:11 (2595906): called boinc_finish(0)

</stderr_txt>
]]>

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