Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:46:44 (25122): wrapper (7.7.26015): starting
13:46:44 (25122): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 13:46:44] Arguments: --nthreads 8
[2025-11-19 13:46:44] Threads: 8
[2025-11-19 13:46:44] Checking for CVMFS
[2025-11-19 13:46:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 13:46:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 13:46:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 13:46:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 13:46:44] 2.11.4.0 5420 107962 69992 153053 2 90 12025114 18432000 1885 130560 0 74789807 99.971 4642375 33710 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 13:46:44] CVMFS is ok
[2025-11-19 13:46:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 13:46:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 13:46:44] Further information can be found at the LHC@home message board.
[2025-11-19 13:46:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 13:46:44] Checking for apptainer binary...
[2025-11-19 13:46:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 13:46:44] Running /usr/bin/apptainer --version
[2025-11-19 13:46:44] apptainer version 1.3.2-1.el7
[2025-11-19 13:46:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 13:46:45] c-206-22.aglt2.org
[2025-11-19 13:46:45] apptainer works
[2025-11-19 13:46:45] Set ATHENA_PROC_NUMBER=8
[2025-11-19 13:46:45] Set ATHENA_CORE_NUMBER=8
[2025-11-19 13:46:45] Starting ATLAS job with PandaID=6892547904
[2025-11-19 13:46:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 08:58:57]  *** The last 200 lines of the pilot log: ***
[2025-11-20 08:58:57] 2025-11-20 13:57:57,037 | INFO     | monitor loop #4941: job 0:6892547904 is in state 'finished'
[2025-11-20 08:58:57] 2025-11-20 13:57:57,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 08:58:57] 2025-11-20 13:57:58,792 | INFO     | time since job start (69062s) is within the limit (172800.0s)
[2025-11-20 08:58:57] 2025-11-20 13:57:58,956 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 08:58:57] 2025-11-20 13:57:58,962 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2466.8333333333335
[2025-11-20 08:58:57] 2025-11-20 13:57:58,967 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6892547904/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 08:58:57] 2025-11-20 13:57:58,968 | INFO     | extracted standard info from prmon json
[2025-11-20 08:58:57] 2025-11-20 13:57:58,968 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 08:58:57] 2025-11-20 13:57:58,968 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 08:58:57] 2025-11-20 13:57:58,999 | INFO     | fitting pss+swap vs Time
[2025-11-20 08:58:57] 2025-11-20 13:57:59,000 | INFO     | sum of square deviations: 449795755648.6668
[2025-11-20 08:58:57] 2025-11-20 13:57:59,042 | INFO     | sum of deviations: 2414406818048.834
[2025-11-20 08:58:57] 2025-11-20 13:57:59,042 | INFO     | mean x: 1763612538.1404593
[2025-11-20 08:58:57] 2025-11-20 13:57:59,042 | INFO     | mean y: 2865340.0450530034
[2025-11-20 08:58:57] 2025-11-20 13:57:59,042 | INFO     | intersect: -9463827226.544432
[2025-11-20 08:58:57] 2025-11-20 13:57:59,044 | INFO     | chi2: 4.981183781241171
[2025-11-20 08:58:57] 2025-11-20 13:57:59,046 | INFO     | sum of square deviations: 443862042256.60693
[2025-11-20 08:58:57] 2025-11-20 13:57:59,088 | INFO     | sum of deviations: 2718538103405.193
[2025-11-20 08:58:57] 2025-11-20 13:57:59,088 | INFO     | mean x: 1763612385.6433008
[2025-11-20 08:58:57] 2025-11-20 13:57:59,088 | INFO     | mean y: 2873151.1721384204
[2025-11-20 08:58:57] 2025-11-20 13:57:59,089 | INFO     | intersect: -10798788206.563122
[2025-11-20 08:58:57] 2025-11-20 13:57:59,090 | INFO     | chi2: 2.7121137749785067
[2025-11-20 08:58:57] 2025-11-20 13:57:59,090 | INFO     | current chi2=2.7121137749785067 (change=45.552826515011176 %)
[2025-11-20 08:58:57] 2025-11-20 13:57:59,092 | INFO     | sum of square deviations: 437980748452.0285
[2025-11-20 08:58:57] 2025-11-20 13:57:59,131 | INFO     | sum of deviations: 2775491389143.8555
[2025-11-20 08:58:57] 2025-11-20 13:57:59,132 | INFO     | mean x: 1763612233.1461675
[2025-11-20 08:58:57] 2025-11-20 13:57:59,132 | INFO     | mean y: 2874623.885026738
[2025-11-20 08:58:57] 2025-11-20 13:57:59,132 | INFO     | intersect: -11173165839.505535
[2025-11-20 08:58:57] 2025-11-20 13:57:59,134 | INFO     | chi2: 2.4840819829068463
[2025-11-20 08:58:57] 2025-11-20 13:57:59,134 | INFO     | current chi2=2.4840819829068463 (change=8.407899188280458 %)
[2025-11-20 08:58:57] 2025-11-20 13:57:59,134 | INFO     | right removable region: 1121
[2025-11-20 08:58:57] 2025-11-20 13:57:59,136 | INFO     | sum of square deviations: 443861668814.8929
[2025-11-20 08:58:57] 2025-11-20 13:57:59,169 | INFO     | sum of deviations: 2111167505765.5217
[2025-11-20 08:58:57] 2025-11-20 13:57:59,169 | INFO     | mean x: 1763612690.6424134
[2025-11-20 08:58:57] 2025-11-20 13:57:59,170 | INFO     | mean y: 2873124.616681455
[2025-11-20 08:58:57] 2025-11-20 13:57:59,170 | INFO     | intersect: -8385510164.215394
[2025-11-20 08:58:57] 2025-11-20 13:57:59,171 | INFO     | chi2: 2.8491165756933423
[2025-11-20 08:58:57] 2025-11-20 13:57:59,171 | INFO     | current chi2=2.8491165756933423 (change=42.8024200507731 %)
[2025-11-20 08:58:57] 2025-11-20 13:57:59,172 | INFO     | sum of square deviations: 437980070803.89935
[2025-11-20 08:58:57] 2025-11-20 13:57:59,200 | INFO     | sum of deviations: 2022810744841.6914
[2025-11-20 08:58:57] 2025-11-20 13:57:59,201 | INFO     | mean x: 1763612843.1434937
[2025-11-20 08:58:57] 2025-11-20 13:57:59,201 | INFO     | mean y: 2875415.2317290553
[2025-11-20 08:58:57] 2025-11-20 13:57:59,201 | INFO     | intersect: -8142369646.49792
[2025-11-20 08:58:57] 2025-11-20 13:57:59,203 | INFO     | chi2: 2.7696341557377453
[2025-11-20 08:58:57] 2025-11-20 13:57:59,203 | INFO     | current chi2=2.7696341557377453 (change=2.789721580144705 %)
[2025-11-20 08:58:57] 2025-11-20 13:57:59,203 | INFO     | left removable region: 20
[2025-11-20 08:58:57] 2025-11-20 13:57:59,205 | INFO     | sum of square deviations: 413845331828.37213
[2025-11-20 08:58:57] 2025-11-20 13:57:59,238 | INFO     | sum of deviations: 2247529785650.3994
[2025-11-20 08:58:57] 2025-11-20 13:57:59,238 | INFO     | mean x: 1763612812.650318
[2025-11-20 08:58:57] 2025-11-20 13:57:59,238 | INFO     | mean y: 2888290.5776566756
[2025-11-20 08:58:57] 2025-11-20 13:57:59,238 | INFO     | intersect: -9575019255.882486
[2025-11-20 08:58:57] 2025-11-20 13:57:59,239 | INFO     | chi2: 0.20552426588695868
[2025-11-20 08:58:57] 2025-11-20 13:57:59,240 | INFO     | current memory leak: 5.43 B/s (using 1101 data points, chi2=0.21)
[2025-11-20 08:58:57] 2025-11-20 13:57:59,240 | INFO     | could have reported an average CPU frequency of 2620 MHz (41 samples)
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | ..............................
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | . Timing measurements:
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | . get job = 0 s
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | . initial setup = 2 s
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | . payload setup = 5 s
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | . stage-in = 0 s
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | . payload execution = 69031 s
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | . stage-out = 3 s
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | . log creation = 0 s
[2025-11-20 08:58:57] 2025-11-20 13:57:59,241 | INFO     | ..............................
[2025-11-20 08:58:57] 2025-11-20 13:57:59,350 | INFO     | 
[2025-11-20 08:58:57] 2025-11-20 13:57:59,350 | INFO     | job summary report
[2025-11-20 08:58:57] 2025-11-20 13:57:59,350 | INFO     | --------------------------------------------------
[2025-11-20 08:58:57] 2025-11-20 13:57:59,350 | INFO     | PanDA job id: 6892547904
[2025-11-20 08:58:57] 2025-11-20 13:57:59,351 | INFO     | task id: 47493029
[2025-11-20 08:58:57] 2025-11-20 13:57:59,351 | INFO     | errors: (none)
[2025-11-20 08:58:57] 2025-11-20 13:57:59,351 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 08:58:57] 2025-11-20 13:57:59,351 | INFO     | pilot state: finished 
[2025-11-20 08:58:57] 2025-11-20 13:57:59,351 | INFO     | transexitcode: 0
[2025-11-20 08:58:57] 2025-11-20 13:57:59,351 | INFO     | exeerrorcode: 0
[2025-11-20 08:58:57] 2025-11-20 13:57:59,351 | INFO     | exeerrordiag: 
[2025-11-20 08:58:57] 2025-11-20 13:57:59,351 | INFO     | exitcode: 0
[2025-11-20 08:58:57] 2025-11-20 13:57:59,351 | INFO     | exitmsg: OK
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | cpuconsumptiontime: 532221 s
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | nevents: 1000
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | neventsw: 0
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | pid: 3031
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | pgrp: 3031
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | corecount: 8
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | event service: False
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | sizes: {0: 2297200, 1: 2297200, 4: 2297490, 12: 2297518, 69040: 2353592, 69044: 2364366, 69047: 2364652}
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | --------------------------------------------------
[2025-11-20 08:58:57] 2025-11-20 13:57:59,352 | INFO     | 
[2025-11-20 08:58:57] 2025-11-20 13:57:59,353 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-20 08:58:57] 2025-11-20 13:57:59,381 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,381 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,381 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,381 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,382 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,382 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,382 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,382 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,382 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,383 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,383 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,383 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,383 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,383 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,383 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,384 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,384 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 08:58:57] 2025-11-20 13:57:59,384 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 08:58:57] 2025-11-20 13:57:59,385 | INFO     | job 6892547904 has completed (purged errors)
[2025-11-20 08:58:57] 2025-11-20 13:57:59,385 | INFO     | overall cleanup function is called
[2025-11-20 08:58:57] 2025-11-20 13:58:00,401 | INFO     | --- collectZombieJob: --- 10, [3031]
[2025-11-20 08:58:57] 2025-11-20 13:58:00,401 | INFO     | zombie collector waiting for pid 3031
[2025-11-20 08:58:57] 2025-11-20 13:58:00,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 08:58:57] 2025-11-20 13:58:00,401 | INFO     | collected zombie processes
[2025-11-20 08:58:57] 2025-11-20 13:58:00,401 | INFO     | will attempt to kill all subprocesses of pid=3031
[2025-11-20 08:58:57] 2025-11-20 13:58:00,569 | INFO     | process IDs to be killed: [3031] (in reverse order)
[2025-11-20 08:58:57] 2025-11-20 13:58:00,629 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 08:58:57] 2025-11-20 13:58:00,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 08:58:57] 2025-11-20 13:58:00,635 | INFO     | did not find any defunct processes belonging to 3031
[2025-11-20 08:58:57] 2025-11-20 13:58:00,639 | INFO     | did not find any defunct processes belonging to 3031
[2025-11-20 08:58:57] 2025-11-20 13:58:00,640 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 08:58:57] 2025-11-20 13:58:00,640 | INFO     | ready for new job
[2025-11-20 08:58:57] 2025-11-20 13:58:00,640 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 08:58:57] 2025-11-20 13:58:00,644 | INFO     | ***************************************
[2025-11-20 08:58:57] 2025-11-20 13:58:00,644 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 08:58:57] 2025-11-20 13:58:00,644 | INFO     | ***************************************
[2025-11-20 08:58:57] 2025-11-20 13:58:00,644 | INFO     | 
[2025-11-20 08:58:57] 2025-11-20 13:58:00,645 | INFO     | architecture information:
[2025-11-20 08:58:57] 2025-11-20 13:58:00,645 | INFO     | executing command: cat /etc/os-release
[2025-11-20 08:58:57] 2025-11-20 13:58:00,657 | INFO     | cat /etc/os-release:
[2025-11-20 08:58:57] NAME="CentOS Linux"
[2025-11-20 08:58:57] VERSION="7 (Core)"
[2025-11-20 08:58:57] ID="centos"
[2025-11-20 08:58:57] ID_LIKE="rhel fedora"
[2025-11-20 08:58:57] VERSION_ID="7"
[2025-11-20 08:58:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 08:58:57] ANSI_COLOR="0;31"
[2025-11-20 08:58:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 08:58:57] HOME_URL="https://www.centos.org/"
[2025-11-20 08:58:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 08:58:57] 
[2025-11-20 08:58:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 08:58:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 08:58:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 08:58:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 08:58:57] 
[2025-11-20 08:58:57] 2025-11-20 13:58:00,658 | INFO     | ***************************************
[2025-11-20 08:58:57] 2025-11-20 13:58:01,161 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-20 08:58:57] 2025-11-20 13:58:01,181 | INFO     | sufficient remaining disk space (26267877376 B)
[2025-11-20 08:58:57] 2025-11-20 13:58:01,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 08:58:57] 2025-11-20 13:58:01,181 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 08:58:57] 2025-11-20 13:58:01,182 | INFO     | update_server=False
[2025-11-20 08:58:57] 2025-11-20 13:58:01,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 08:58:57] 2025-11-20 13:58:01,182 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 08:58:57] 2025-11-20 13:58:01,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 08:58:57] 2025-11-20 13:58:01,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 08:58:57] 2025-11-20 13:58:01,183 | INFO     | aborting loop
[2025-11-20 08:58:57] 2025-11-20 13:58:01,281 | INFO     | all data control threads have been joined
[2025-11-20 08:58:57] 2025-11-20 13:58:01,466 | INFO     | all payload control threads have been joined
[2025-11-20 08:58:57] 2025-11-20 13:58:01,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 08:58:57] 2025-11-20 13:58:02,187 | INFO     | [job] retrieve thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:02,188 | INFO     | [job] queue monitor thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:02,188 | INFO     | [job] job monitor thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:02,281 | INFO     | all job control threads have been joined
[2025-11-20 08:58:57] 2025-11-20 13:58:02,286 | INFO     | [data] control thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:02,295 | INFO     | [data] copytool_in thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:02,295 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:02,296 | INFO     | [job] validate thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:02,471 | INFO     | [payload] control thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:02,940 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:03,016 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:03,188 | INFO     | [data] copytool_out thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:03,211 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:03,287 | INFO     | [job] control thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:03,514 | INFO     | [payload] failed_post thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:03,780 | INFO     | [payload] validate_post thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:05,655 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 08:58:57] 2025-11-20 13:58:32,027 | INFO     | PID=28812 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 08:58:57] 2025-11-20 13:58:32,027 | INFO     | .. there are 3 such processes running
[2025-11-20 08:58:57] 2025-11-20 13:58:32,028 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 08:58:57] 2025-11-20 13:58:32,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 08:58:57] 2025-11-20 13:58:32,028 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 08:58:57] 2025-11-20 13:58:50,949 | INFO     | [monitor] cgroup control has ended
[2025-11-20 08:58:57] 2025-11-20 13:58:51,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705894557504)>', '<ExcThread(monitor, started 140704865052416)>']
[2025-11-20 08:58:57] 2025-11-20 13:58:52,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 08:58:57] 2025-11-20 13:58:52,129 | INFO     | [monitor] control thread has ended
[2025-11-20 08:58:57] 2025-11-20 13:58:56,826 | INFO     | all workflow threads have been joined
[2025-11-20 08:58:57] 2025-11-20 13:58:56,826 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 08:58:57] 2025-11-20 13:58:56,826 | INFO     | traces error code: 0
[2025-11-20 08:58:57] 2025-11-20 13:58:56,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 08:58:57] 2025-11-20 13:58:56,947 [wrapper] ==== pilot stdout END ====
[2025-11-20 08:58:57] 2025-11-20 13:58:56,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 08:58:57] 2025-11-20 13:58:56,952 [wrapper] pilotpid: 28812
[2025-11-20 08:58:57] 2025-11-20 13:58:56,954 [wrapper] Pilot exit status: 0
[2025-11-20 08:58:57] 2025-11-20 13:58:56,964 [wrapper] pandaids: 6892547904
[2025-11-20 08:58:57] 2025-11-20 13:58:57,004 [wrapper] cleanup supervisor_pilot 26294 28813
[2025-11-20 08:58:57] 2025-11-20 13:58:57,007 [wrapper] Test setup, not cleaning
[2025-11-20 08:58:57] 2025-11-20 13:58:57,009 [wrapper] apfmon messages muted
[2025-11-20 08:58:57] 2025-11-20 13:58:57,011 [wrapper] ==== wrapper stdout END ====
[2025-11-20 08:58:57] 2025-11-20 13:58:57,014 [wrapper] ==== wrapper stderr END ====
[2025-11-20 08:58:57]  *** Error codes and diagnostics ***
[2025-11-20 08:58:57]     "exeErrorCode": 0,
[2025-11-20 08:58:57]     "exeErrorDiag": "",
[2025-11-20 08:58:57]     "pilotErrorCode": 0,
[2025-11-20 08:58:57]     "pilotErrorDiag": "",
[2025-11-20 08:58:57]  *** Listing of results directory ***
[2025-11-20 08:58:57] total 1314236
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 03:32 pilot3.tar.gz
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 03:33 queuedata.json
[2025-11-20 08:58:57] -rwx------ 1 boincer umatlas     36292 Nov 19 03:35 runpilot2-wrapper.sh
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas       100 Nov 19 13:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 08:58:57] -rwxr-xr-x 1 boincer umatlas      7986 Nov 19 13:46 run_atlas
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas       105 Nov 19 13:46 job.xml
[2025-11-20 08:58:57] -rw-r--r-- 2 boincer umatlas 407292957 Nov 19 13:46 EVNT.47493027._000321.pool.root.1
[2025-11-20 08:58:57] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 13:46 start_atlas.sh
[2025-11-20 08:58:57] drwxrwx--x 2 boincer umatlas      4096 Nov 19 13:46 shared
[2025-11-20 08:58:57] -rw-r--r-- 2 boincer umatlas    590096 Nov 19 13:46 input.tar.gz
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas         0 Nov 19 13:46 boinc_lockfile
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas      2773 Nov 19 13:46 pandaJob.out
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas    989434 Nov 19 13:46 agis_schedconf.cvmfs.json
[2025-11-20 08:58:57] drwx------ 5 boincer umatlas      4096 Nov 19 13:46 pilot3
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas       533 Nov 20 08:48 boinc_task_state.xml
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas 910820159 Nov 20 08:57 HITS.47493029._003162.pool.root.1
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas        95 Nov 20 08:57 pilot_heartbeat.json
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas      1067 Nov 20 08:57 memory_monitor_summary.json
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas   1526164 Nov 20 08:57 agis_ddmendpoints.agis.ALL.json
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas   2311801 Nov 20 08:57 log.47493029._003162.job.log.tgz.1
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas      8664 Nov 20 08:57 heartbeat.json
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas      5952 Nov 20 08:58 init_data.xml
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 08:58 boinc_mmap_file
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas        29 Nov 20 08:58 wrapper_checkpoint.txt
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas      4821 Nov 20 08:58 pilotlog.txt
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas   9560970 Nov 20 08:58 log.47493029._003162.job.log.1
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas       353 Nov 20 08:58 output.list
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas       620 Nov 20 08:58 runtime_log
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas  11888640 Nov 20 08:58 result.tar.gz
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas      8704 Nov 20 08:58 runtime_log.err
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas       668 Nov 20 08:58 GTzLDm3psf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm46FKDmwMk1rn.diag
[2025-11-20 08:58:57] -rw-r--r-- 1 boincer umatlas     21290 Nov 20 08:58 stderr.txt
[2025-11-20 08:58:57] HITS file was successfully produced:
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas 910820159 Nov 20 08:57 shared/HITS.pool.root.1
[2025-11-20 08:58:57]  *** Contents of shared directory: ***
[2025-11-20 08:58:57] total 1299436
[2025-11-20 08:58:57] -rw-r--r-- 2 boincer umatlas 407292957 Nov 19 13:46 ATLAS.root_0
[2025-11-20 08:58:57] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 13:46 start_atlas.sh
[2025-11-20 08:58:57] -rw-r--r-- 2 boincer umatlas    590096 Nov 19 13:46 input.tar.gz
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas 910820159 Nov 20 08:57 HITS.pool.root.1
[2025-11-20 08:58:57] -rw------- 1 boincer umatlas  11888640 Nov 20 08:58 result.tar.gz
08:58:58 (25122): run_atlas exited; CPU time 530952.673991
08:58:58 (25122): called boinc_finish(0)

</stderr_txt>
]]>

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