Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:09:39 (31483): wrapper (7.7.26015): starting
18:09:39 (31483): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 18:09:39] Arguments: --nthreads 8
[2025-11-22 18:09:39] Threads: 8
[2025-11-22 18:09:39] Checking for CVMFS
[2025-11-22 18:09:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 18:09:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 18:09:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 18:09:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 18:09:41] 2.11.2.0 9859 279748 136924 153179 0 105 19186364 25165824 3960 130560 3 145613739 99.890 81903209 3472 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 18:09:41] CVMFS is ok
[2025-11-22 18:09:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 18:09:41] Checking for apptainer binary...
[2025-11-22 18:09:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 18:09:41] Running /usr/bin/apptainer --version
[2025-11-22 18:09:41] apptainer version 1.3.2-1.el7
[2025-11-22 18:09:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 18:09:52] cg-vwn461.simple-grid.lan
[2025-11-22 18:09:52] apptainer works
[2025-11-22 18:09:52] Set ATHENA_PROC_NUMBER=8
[2025-11-22 18:09:52] Set ATHENA_CORE_NUMBER=8
[2025-11-22 18:09:52] Starting ATLAS job with PandaID=6892546595
[2025-11-22 18:09:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 17:32:47]  *** The last 200 lines of the pilot log: ***
[2025-11-23 17:32:47] 2025-11-23 16:31:38,848 | INFO     | 83918s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-23 17:32:47] 2025-11-23 16:31:40,854 | INFO     | time since job start (83909s) is within the limit (172800.0s)
[2025-11-23 17:32:47] 2025-11-23 16:31:41,175 | INFO     | monitor loop #5701: job 0:6892546595 is in state 'finished'
[2025-11-23 17:32:47] 2025-11-23 16:31:41,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 17:32:47] 2025-11-23 16:31:42,867 | INFO     | time since job start (83911s) is within the limit (172800.0s)
[2025-11-23 17:32:47] 2025-11-23 16:31:43,680 | INFO     | monitor loop #5702: job 0:6892546595 is in state 'finished'
[2025-11-23 17:32:47] 2025-11-23 16:31:43,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 17:32:47] 2025-11-23 16:31:44,875 | INFO     | time since job start (83913s) is within the limit (172800.0s)
[2025-11-23 17:32:47] 2025-11-23 16:31:46,184 | INFO     | monitor loop #5703: job 0:6892546595 is in state 'finished'
[2025-11-23 17:32:47] 2025-11-23 16:31:46,184 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 17:32:47] 2025-11-23 16:31:46,882 | INFO     | time since job start (83915s) is within the limit (172800.0s)
[2025-11-23 17:32:47] 2025-11-23 16:31:48,053 | INFO     | PID=2978 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 17:32:47] 2025-11-23 16:31:48,053 | INFO     | .. there are 9 such processes running
[2025-11-23 17:32:47] 2025-11-23 16:31:48,689 | INFO     | monitor loop #5704: job 0:6892546595 is in state 'finished'
[2025-11-23 17:32:47] 2025-11-23 16:31:48,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 17:32:47] 2025-11-23 16:31:49,055 | INFO     | time since job start (83918s) is within the limit (172800.0s)
[2025-11-23 17:32:47] 2025-11-23 16:31:49,841 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 17:32:47] 2025-11-23 16:31:49,842 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-23 17:32:47] 2025-11-23 16:31:49,844 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6892546595/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 17:32:47] 2025-11-23 16:31:49,845 | INFO     | extracted standard info from prmon json
[2025-11-23 17:32:47] 2025-11-23 16:31:49,845 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 17:32:47] 2025-11-23 16:31:49,845 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 17:32:47] 2025-11-23 16:31:49,881 | INFO     | fitting pss+swap vs Time
[2025-11-23 17:32:47] 2025-11-23 16:31:49,884 | INFO     | sum of square deviations: 792106399372.0219
[2025-11-23 17:32:47] 2025-11-23 16:31:49,950 | INFO     | sum of deviations: 2286919460924.0376
[2025-11-23 17:32:47] 2025-11-23 16:31:49,950 | INFO     | mean x: 1763873725.2874908
[2025-11-23 17:32:47] 2025-11-23 16:31:49,950 | INFO     | mean y: 2856606.750548647
[2025-11-23 17:32:47] 2025-11-23 16:31:49,950 | INFO     | intersect: -5089687970.8094225
[2025-11-23 17:32:47] 2025-11-23 16:31:49,952 | INFO     | chi2: 15.896239322289016
[2025-11-23 17:32:47] 2025-11-23 16:31:49,954 | INFO     | sum of square deviations: 783446950536.1937
[2025-11-23 17:32:47] 2025-11-23 16:31:49,999 | INFO     | sum of deviations: 2740699462466.9277
[2025-11-23 17:32:47] 2025-11-23 16:31:49,999 | INFO     | mean x: 1763873572.7922173
[2025-11-23 17:32:47] 2025-11-23 16:31:49,999 | INFO     | mean y: 2864597.0491923643
[2025-11-23 17:32:47] 2025-11-23 16:31:49,999 | INFO     | intersect: -6167620015.218012
[2025-11-23 17:32:47] 2025-11-23 16:31:50,001 | INFO     | chi2: 12.692353095571987
[2025-11-23 17:32:47] 2025-11-23 16:31:50,001 | INFO     | current chi2=12.692353095571987 (change=20.154994912694097 %)
[2025-11-23 17:32:47] 2025-11-23 16:31:50,001 | INFO     | right removable region: 1361
[2025-11-23 17:32:47] 2025-11-23 16:31:50,003 | INFO     | sum of square deviations: 783445876936.1937
[2025-11-23 17:32:47] 2025-11-23 16:31:50,057 | INFO     | sum of deviations: 1775966025227.4417
[2025-11-23 17:32:47] 2025-11-23 16:31:50,058 | INFO     | mean x: 1763873877.7922173
[2025-11-23 17:32:47] 2025-11-23 16:31:50,058 | INFO     | mean y: 2865601.966226138
[2025-11-23 17:32:47] 2025-11-23 16:31:50,058 | INFO     | intersect: -3995598327.661787
[2025-11-23 17:32:47] 2025-11-23 16:31:50,059 | INFO     | chi2: 12.266872590255668
[2025-11-23 17:32:47] 2025-11-23 16:31:50,059 | INFO     | current chi2=12.266872590255668 (change=22.831606007242282 %)
[2025-11-23 17:32:47] 2025-11-23 16:31:50,059 | INFO     | left removable region: 10
[2025-11-23 17:32:47] 2025-11-23 16:31:50,061 | INFO     | sum of square deviations: 764616928199.9926
[2025-11-23 17:32:47] 2025-11-23 16:31:50,120 | INFO     | sum of deviations: 2111149084710.3525
[2025-11-23 17:32:47] 2025-11-23 16:31:50,125 | INFO     | mean x: 1763873847.300518
[2025-11-23 17:32:47] 2025-11-23 16:31:50,125 | INFO     | mean y: 2879785.353811991
[2025-11-23 17:32:47] 2025-11-23 16:31:50,125 | INFO     | intersect: -4867272209.631868
[2025-11-23 17:32:47] 2025-11-23 16:31:50,127 | INFO     | chi2: 7.268159368087933
[2025-11-23 17:32:47] 2025-11-23 16:31:50,127 | INFO     | current memory leak: 2.76 B/s (using 1351 data points, chi2=7.27)
[2025-11-23 17:32:47] 2025-11-23 16:31:50,129 | INFO     | could have reported an average CPU frequency of 2250 MHz (47 samples)
[2025-11-23 17:32:47] 2025-11-23 16:31:50,129 | INFO     | ..............................
[2025-11-23 17:32:47] 2025-11-23 16:31:50,130 | INFO     | . Timing measurements:
[2025-11-23 17:32:47] 2025-11-23 16:31:50,130 | INFO     | . get job = 0 s
[2025-11-23 17:32:47] 2025-11-23 16:31:50,130 | INFO     | . initial setup = 10 s
[2025-11-23 17:32:47] 2025-11-23 16:31:50,130 | INFO     | . payload setup = 152 s
[2025-11-23 17:32:47] 2025-11-23 16:31:50,130 | INFO     | . stage-in = 0 s
[2025-11-23 17:32:47] 2025-11-23 16:31:50,130 | INFO     | . payload execution = 83484 s
[2025-11-23 17:32:47] 2025-11-23 16:31:50,130 | INFO     | . stage-out = 5 s
[2025-11-23 17:32:47] 2025-11-23 16:31:50,130 | INFO     | . log creation = 2 s
[2025-11-23 17:32:47] 2025-11-23 16:31:50,130 | INFO     | ..............................
[2025-11-23 17:32:47] 2025-11-23 16:31:50,418 | INFO     | 
[2025-11-23 17:32:47] 2025-11-23 16:31:50,418 | INFO     | job summary report
[2025-11-23 17:32:47] 2025-11-23 16:31:50,418 | INFO     | --------------------------------------------------
[2025-11-23 17:32:47] 2025-11-23 16:31:50,418 | INFO     | PanDA job id: 6892546595
[2025-11-23 17:32:47] 2025-11-23 16:31:50,418 | INFO     | task id: 47493029
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | errors: (none)
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | pilot state: finished 
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | transexitcode: 0
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | exeerrorcode: 0
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | exeerrordiag: 
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | exitcode: 0
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | exitmsg: OK
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | cpuconsumptiontime: 306050 s
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | nevents: 1000
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | neventsw: 0
[2025-11-23 17:32:47] 2025-11-23 16:31:50,419 | INFO     | pid: 9675
[2025-11-23 17:32:47] 2025-11-23 16:31:50,420 | INFO     | pgrp: 9675
[2025-11-23 17:32:47] 2025-11-23 16:31:50,420 | INFO     | corecount: 8
[2025-11-23 17:32:47] 2025-11-23 16:31:50,420 | INFO     | event service: False
[2025-11-23 17:32:47] 2025-11-23 16:31:50,420 | INFO     | sizes: {0: 2297968, 1: 2298654, 2: 2298853, 13: 2298853, 23: 2298909, 34: 2298937, 45: 2299093, 55: 2299121, 66: 2299149, 77: 2299177, 88: 2299233, 91: 2299803, 98
[2025-11-23 17:32:47] 2025-11-23 16:31:50,420 | INFO     | --------------------------------------------------
[2025-11-23 17:32:47] 2025-11-23 16:31:50,420 | INFO     | 
[2025-11-23 17:32:47] 2025-11-23 16:31:50,420 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-23 17:32:47] 2025-11-23 16:31:50,745 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,745 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,746 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,747 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 17:32:47] 2025-11-23 16:31:50,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,747 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 17:32:47] 2025-11-23 16:31:50,748 | INFO     | job 6892546595 has completed (purged errors)
[2025-11-23 17:32:47] 2025-11-23 16:31:50,748 | INFO     | overall cleanup function is called
[2025-11-23 17:32:47] 2025-11-23 16:31:51,765 | INFO     | --- collectZombieJob: --- 10, [9675]
[2025-11-23 17:32:47] 2025-11-23 16:31:51,765 | INFO     | zombie collector waiting for pid 9675
[2025-11-23 17:32:47] 2025-11-23 16:31:51,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 17:32:47] 2025-11-23 16:31:51,765 | INFO     | collected zombie processes
[2025-11-23 17:32:47] 2025-11-23 16:31:51,765 | INFO     | will attempt to kill all subprocesses of pid=9675
[2025-11-23 17:32:47] 2025-11-23 16:31:51,864 | INFO     | process IDs to be killed: [9675] (in reverse order)
[2025-11-23 17:32:47] 2025-11-23 16:31:52,731 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 17:32:47] 2025-11-23 16:31:52,732 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 17:32:47] 2025-11-23 16:31:52,735 | INFO     | did not find any defunct processes belonging to 9675
[2025-11-23 17:32:47] 2025-11-23 16:31:52,738 | INFO     | did not find any defunct processes belonging to 9675
[2025-11-23 17:32:47] 2025-11-23 16:31:52,812 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 17:32:47] 2025-11-23 16:31:52,812 | INFO     | ready for new job
[2025-11-23 17:32:47] 2025-11-23 16:31:52,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 17:32:47] 2025-11-23 16:31:52,818 | INFO     | ***************************************
[2025-11-23 17:32:47] 2025-11-23 16:31:52,818 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 17:32:47] 2025-11-23 16:31:52,818 | INFO     | ***************************************
[2025-11-23 17:32:47] 2025-11-23 16:31:52,818 | INFO     | 
[2025-11-23 17:32:47] 2025-11-23 16:31:52,819 | INFO     | pilot is running in a VM
[2025-11-23 17:32:47] 2025-11-23 16:31:52,819 | INFO     | architecture information:
[2025-11-23 17:32:47] 2025-11-23 16:31:52,832 | INFO     | executing command: cat /etc/os-release
[2025-11-23 17:32:47] 2025-11-23 16:31:53,133 | INFO     | cat /etc/os-release:
[2025-11-23 17:32:47] NAME="CentOS Linux"
[2025-11-23 17:32:47] VERSION="7 (Core)"
[2025-11-23 17:32:47] ID="centos"
[2025-11-23 17:32:47] ID_LIKE="rhel fedora"
[2025-11-23 17:32:47] VERSION_ID="7"
[2025-11-23 17:32:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 17:32:47] ANSI_COLOR="0;31"
[2025-11-23 17:32:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 17:32:47] HOME_URL="https://www.centos.org/"
[2025-11-23 17:32:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 17:32:47] 
[2025-11-23 17:32:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 17:32:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 17:32:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 17:32:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 17:32:47] 
[2025-11-23 17:32:47] 2025-11-23 16:31:53,134 | INFO     | ***************************************
[2025-11-23 17:32:47] 2025-11-23 16:31:53,637 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-23 17:32:47] 2025-11-23 16:31:53,984 | INFO     | sufficient remaining disk space (494871248896 B)
[2025-11-23 17:32:47] 2025-11-23 16:31:53,984 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 17:32:47] 2025-11-23 16:31:53,984 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 17:32:47] 2025-11-23 16:31:53,984 | INFO     | update_server=False
[2025-11-23 17:32:47] 2025-11-23 16:31:53,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 17:32:47] 2025-11-23 16:31:53,996 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 17:32:47] 2025-11-23 16:31:54,402 | INFO     | all data control threads have been joined
[2025-11-23 17:32:47] 2025-11-23 16:31:54,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 17:32:47] 2025-11-23 16:31:54,711 | INFO     | aborting loop
[2025-11-23 17:32:47] 2025-11-23 16:31:54,991 | INFO     | [job] retrieve thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:55,062 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:55,106 | INFO     | all job control threads have been joined
[2025-11-23 17:32:47] 2025-11-23 16:31:55,188 | INFO     | all payload control threads have been joined
[2025-11-23 17:32:47] 2025-11-23 16:31:55,280 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 17:32:47] 2025-11-23 16:31:55,408 | INFO     | [data] control thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:55,423 | INFO     | [data] copytool_in thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:55,538 | INFO     | [payload] failed_post thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:55,717 | INFO     | [job] job monitor thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:55,727 | INFO     | [payload] validate_post thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:56,003 | INFO     | [data] copytool_out thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:56,087 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:56,112 | INFO     | [job] control thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:56,162 | INFO     | [job] validate thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:56,194 | INFO     | [payload] control thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:56,286 | INFO     | [job] queue monitor thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:56,365 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:56,403 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:31:56,541 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 17:32:47] 2025-11-23 16:32:00,549 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 17:32:47] 2025-11-23 16:32:22,281 | INFO     | PID=2978 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 17:32:47] 2025-11-23 16:32:22,281 | INFO     | .. there are 9 such processes running
[2025-11-23 17:32:47] 2025-11-23 16:32:22,282 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 17:32:47] 2025-11-23 16:32:22,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 17:32:47] 2025-11-23 16:32:22,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 17:32:47] 2025-11-23 16:32:36,756 | INFO     | [monitor] cgroup control has ended
[2025-11-23 17:32:47] 2025-11-23 16:32:36,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937469585216)>', '<ExcThread(monitor, started 139936720209664)>']
[2025-11-23 17:32:47] 2025-11-23 16:32:37,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 17:32:47] 2025-11-23 16:32:37,370 | INFO     | [monitor] control thread has ended
[2025-11-23 17:32:47] 2025-11-23 16:32:41,876 | INFO     | all workflow threads have been joined
[2025-11-23 17:32:47] 2025-11-23 16:32:41,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 17:32:47] 2025-11-23 16:32:41,876 | INFO     | traces error code: 0
[2025-11-23 17:32:47] 2025-11-23 16:32:41,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 17:32:47] 2025-11-23 16:32:42,277 [wrapper] ==== pilot stdout END ====
[2025-11-23 17:32:47] 2025-11-23 16:32:42,371 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 17:32:47] 2025-11-23 16:32:42,463 [wrapper] pilotpid: 2978
[2025-11-23 17:32:47] 2025-11-23 16:32:42,532 [wrapper] Pilot exit status: 0
[2025-11-23 17:32:47] 2025-11-23 16:32:42,858 [wrapper] pandaids: 6892546595
[2025-11-23 17:32:47] 2025-11-23 16:32:43,953 [wrapper] cleanup supervisor_pilot 15188 2979
[2025-11-23 17:32:47] 2025-11-23 16:32:44,052 [wrapper] Test setup, not cleaning
[2025-11-23 17:32:47] 2025-11-23 16:32:44,092 [wrapper] apfmon messages muted
[2025-11-23 17:32:47] 2025-11-23 16:32:44,162 [wrapper] ==== wrapper stdout END ====
[2025-11-23 17:32:47] 2025-11-23 16:32:44,271 [wrapper] ==== wrapper stderr END ====
[2025-11-23 17:32:47]  *** Error codes and diagnostics ***
[2025-11-23 17:32:47]     "exeErrorCode": 0,
[2025-11-23 17:32:47]     "exeErrorDiag": "",
[2025-11-23 17:32:47]     "pilotErrorCode": 0,
[2025-11-23 17:32:47]     "pilotErrorDiag": "",
[2025-11-23 17:32:47]  *** Listing of results directory ***
[2025-11-23 17:32:47] total 1324800
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc    576529 Nov 19 09:16 pilot3.tar.gz
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc      5112 Nov 19 09:24 queuedata.json
[2025-11-23 17:32:47] -rwx------. 1 boinc boinc     36292 Nov 19 09:25 runpilot2-wrapper.sh
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc       100 Nov 22 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 17:32:47] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 18:09 run_atlas
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc       105 Nov 22 18:09 job.xml
[2025-11-23 17:32:47] -rw-r--r--. 2 boinc boinc 408422460 Nov 22 18:09 EVNT.47493027._000300.pool.root.1
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc      6392 Nov 22 18:09 init_data.xml
[2025-11-23 17:32:47] -rw-r--r--. 2 boinc boinc     15120 Nov 22 18:09 start_atlas.sh
[2025-11-23 17:32:47] drwxrwx--x. 2 boinc boinc        68 Nov 22 18:09 shared
[2025-11-23 17:32:47] -rw-r--r--. 2 boinc boinc    590107 Nov 22 18:09 input.tar.gz
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc         0 Nov 22 18:09 boinc_lockfile
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc      2773 Nov 22 18:09 pandaJob.out
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc    989768 Nov 22 18:13 agis_schedconf.cvmfs.json
[2025-11-23 17:32:47] drwx------. 5 boinc boinc      4096 Nov 22 18:13 pilot3
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc       533 Nov 23 17:07 boinc_task_state.xml
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc 916922949 Nov 23 17:29 HITS.47493029._002955.pool.root.1
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc      1030 Nov 23 17:30 memory_monitor_summary.json
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc   1526164 Nov 23 17:30 agis_ddmendpoints.agis.ALL.json
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc   2463981 Nov 23 17:30 log.47493029._002955.job.log.tgz.1
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc      7944 Nov 23 17:31 heartbeat.json
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc        95 Nov 23 17:32 pilot_heartbeat.json
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc      4884 Nov 23 17:32 pilotlog.txt
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc      8192 Nov 23 17:32 boinc_mmap_file
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc        29 Nov 23 17:32 wrapper_checkpoint.txt
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc  11206347 Nov 23 17:32 log.47493029._002955.job.log.1
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc       353 Nov 23 17:32 output.list
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc       620 Nov 23 17:32 runtime_log
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc  13690880 Nov 23 17:32 result.tar.gz
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc       662 Nov 23 17:32 S42NDmRgsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmp5FKDmJclTFn.diag
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc      8717 Nov 23 17:32 runtime_log.err
[2025-11-23 17:32:47] -rw-r--r--. 1 boinc boinc     21516 Nov 23 17:32 stderr.txt
[2025-11-23 17:32:47] HITS file was successfully produced:
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc 916922949 Nov 23 17:29 shared/HITS.pool.root.1
[2025-11-23 17:32:47]  *** Contents of shared directory: ***
[2025-11-23 17:32:47] total 1308256
[2025-11-23 17:32:47] -rw-r--r--. 2 boinc boinc 408422460 Nov 22 18:09 ATLAS.root_0
[2025-11-23 17:32:47] -rw-r--r--. 2 boinc boinc     15120 Nov 22 18:09 start_atlas.sh
[2025-11-23 17:32:47] -rw-r--r--. 2 boinc boinc    590107 Nov 22 18:09 input.tar.gz
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc 916922949 Nov 23 17:29 HITS.pool.root.1
[2025-11-23 17:32:47] -rw-------. 1 boinc boinc  13690880 Nov 23 17:32 result.tar.gz
17:32:48 (31483): run_atlas exited; CPU time 306483.003405
17:32:48 (31483): called boinc_finish(0)

</stderr_txt>
]]>

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