Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:42:52 (10504): wrapper (7.7.26015): starting
14:42:52 (10504): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 14:42:52] Arguments: --nthreads 8
[2025-11-22 14:42:52] Threads: 8
[2025-11-22 14:42:52] Checking for CVMFS
[2025-11-22 14:42:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:42:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:42:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:42:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:42:54] 2.11.2.0 22848 279649 145288 153173 2 236 22584327 25165825 4583 130560 2 142976971 99.886 76620894 3063 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 14:42:54] CVMFS is ok
[2025-11-22 14:42:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:42:54] Checking for apptainer binary...
[2025-11-22 14:42:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:42:54] Running /usr/bin/apptainer --version
[2025-11-22 14:42:54] apptainer version 1.3.2-1.el7
[2025-11-22 14:42:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:43:07] cg-vwn482.simple-grid.lan
[2025-11-22 14:43:07] apptainer works
[2025-11-22 14:43:07] Set ATHENA_PROC_NUMBER=8
[2025-11-22 14:43:07] Set ATHENA_CORE_NUMBER=8
[2025-11-22 14:43:07] Starting ATLAS job with PandaID=6892549056
[2025-11-22 14:43:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 13:44:24]  *** The last 200 lines of the pilot log: ***
[2025-11-23 13:44:24] 2025-11-23 12:43:39,301 | INFO     | time since job start (82627s) is within the limit (172800.0s)
[2025-11-23 13:44:24] 2025-11-23 12:43:41,072 | INFO     | monitor loop #5595: job 0:6892549056 is in state 'finished'
[2025-11-23 13:44:24] 2025-11-23 12:43:41,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:44:24] 2025-11-23 12:43:41,311 | INFO     | time since job start (82629s) is within the limit (172800.0s)
[2025-11-23 13:44:24] 2025-11-23 12:43:43,322 | INFO     | time since job start (82631s) is within the limit (172800.0s)
[2025-11-23 13:44:24] 2025-11-23 12:43:43,579 | INFO     | monitor loop #5596: job 0:6892549056 is in state 'finished'
[2025-11-23 13:44:24] 2025-11-23 12:43:43,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:44:24] 2025-11-23 12:43:45,329 | INFO     | time since job start (82633s) is within the limit (172800.0s)
[2025-11-23 13:44:24] 2025-11-23 12:43:46,086 | INFO     | monitor loop #5597: job 0:6892549056 is in state 'finished'
[2025-11-23 13:44:24] 2025-11-23 12:43:46,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:44:24] 2025-11-23 12:43:47,337 | INFO     | time since job start (82635s) is within the limit (172800.0s)
[2025-11-23 13:44:24] 2025-11-23 12:43:48,504 | INFO     | PID=14264 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 13:44:24] 2025-11-23 12:43:48,504 | INFO     | .. there are 9 such processes running
[2025-11-23 13:44:24] 2025-11-23 12:43:48,592 | INFO     | monitor loop #5598: job 0:6892549056 is in state 'finished'
[2025-11-23 13:44:24] 2025-11-23 12:43:48,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:44:24] 2025-11-23 12:43:49,511 | INFO     | time since job start (82637s) is within the limit (172800.0s)
[2025-11-23 13:44:24] 2025-11-23 12:43:50,106 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 13:44:24] 2025-11-23 12:43:50,107 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-23 13:44:24] 2025-11-23 12:43:50,108 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6892549056/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 13:44:24] 2025-11-23 12:43:50,109 | INFO     | extracted standard info from prmon json
[2025-11-23 13:44:24] 2025-11-23 12:43:50,109 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 13:44:24] 2025-11-23 12:43:50,109 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 13:44:24] 2025-11-23 12:43:50,133 | INFO     | fitting pss+swap vs Time
[2025-11-23 13:44:24] 2025-11-23 12:43:50,136 | INFO     | sum of square deviations: 754474141490.8217
[2025-11-23 13:44:24] 2025-11-23 12:43:50,193 | INFO     | sum of deviations: 2605492276752.8276
[2025-11-23 13:44:24] 2025-11-23 12:43:50,194 | INFO     | mean x: 1763860684.1130111
[2025-11-23 13:44:24] 2025-11-23 12:43:50,194 | INFO     | mean y: 2833624.152416357
[2025-11-23 13:44:24] 2025-11-23 12:43:50,194 | INFO     | intersect: -6088462468.041511
[2025-11-23 13:44:24] 2025-11-23 12:43:50,195 | INFO     | chi2: 25.425013109909436
[2025-11-23 13:44:24] 2025-11-23 12:43:50,197 | INFO     | sum of square deviations: 746091612984.6047
[2025-11-23 13:44:24] 2025-11-23 12:43:50,239 | INFO     | sum of deviations: 3039674530113.5273
[2025-11-23 13:44:24] 2025-11-23 12:43:50,240 | INFO     | mean x: 1763860531.6171641
[2025-11-23 13:44:24] 2025-11-23 12:43:50,240 | INFO     | mean y: 2841521.6813432835
[2025-11-23 13:44:24] 2025-11-23 12:43:50,240 | INFO     | intersect: -7183356311.55959
[2025-11-23 13:44:24] 2025-11-23 12:43:50,241 | INFO     | chi2: 22.29209867710318
[2025-11-23 13:44:24] 2025-11-23 12:43:50,242 | INFO     | current chi2=22.29209867710318 (change=12.322174306314118 %)
[2025-11-23 13:44:24] 2025-11-23 12:43:50,242 | INFO     | right removable region: 1339
[2025-11-23 13:44:24] 2025-11-23 12:43:50,244 | INFO     | sum of square deviations: 746090699814.6044
[2025-11-23 13:44:24] 2025-11-23 12:43:50,310 | INFO     | sum of deviations: 2031125422187.8904
[2025-11-23 13:44:24] 2025-11-23 12:43:50,311 | INFO     | mean x: 1763860836.6171641
[2025-11-23 13:44:24] 2025-11-23 12:43:50,311 | INFO     | mean y: 2844072.239552239
[2025-11-23 13:44:24] 2025-11-23 12:43:50,311 | INFO     | intersect: -4799015255.781782
[2025-11-23 13:44:24] 2025-11-23 12:43:50,313 | INFO     | chi2: 20.540654809474667
[2025-11-23 13:44:24] 2025-11-23 12:43:50,313 | INFO     | current chi2=20.540654809474667 (change=19.21083886690734 %)
[2025-11-23 13:44:24] 2025-11-23 12:43:50,313 | INFO     | left removable region: 10
[2025-11-23 13:44:24] 2025-11-23 12:43:50,315 | INFO     | sum of square deviations: 727867286642.763
[2025-11-23 13:44:24] 2025-11-23 12:43:50,359 | INFO     | sum of deviations: 2088381913430.7964
[2025-11-23 13:44:24] 2025-11-23 12:43:50,359 | INFO     | mean x: 1763860806.1264107
[2025-11-23 13:44:24] 2025-11-23 12:43:50,359 | INFO     | mean y: 2862572.5786305494
[2025-11-23 13:44:24] 2025-11-23 12:43:50,359 | INFO     | intersect: -5057970731.682477
[2025-11-23 13:44:24] 2025-11-23 12:43:50,361 | INFO     | chi2: 13.390272723003704
[2025-11-23 13:44:24] 2025-11-23 12:43:50,361 | INFO     | current memory leak: 2.87 B/s (using 1329 data points, chi2=13.39)
[2025-11-23 13:44:24] 2025-11-23 12:43:50,363 | INFO     | could have reported an average CPU frequency of 2249 MHz (46 samples)
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | ..............................
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | . Timing measurements:
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | . get job = 0 s
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | . initial setup = 4 s
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | . payload setup = 135 s
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | . stage-in = 0 s
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | . payload execution = 82184 s
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | . stage-out = 6 s
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | . log creation = 2 s
[2025-11-23 13:44:24] 2025-11-23 12:43:50,364 | INFO     | ..............................
[2025-11-23 13:44:24] 2025-11-23 12:43:50,479 | INFO     | 
[2025-11-23 13:44:24] 2025-11-23 12:43:50,479 | INFO     | job summary report
[2025-11-23 13:44:24] 2025-11-23 12:43:50,479 | INFO     | --------------------------------------------------
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | PanDA job id: 6892549056
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | task id: 47493029
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | errors: (none)
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | pilot state: finished 
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | transexitcode: 0
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | exeerrorcode: 0
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | exeerrordiag: 
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | exitcode: 0
[2025-11-23 13:44:24] 2025-11-23 12:43:50,480 | INFO     | exitmsg: OK
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | cpuconsumptiontime: 301730 s
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | nevents: 1000
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | neventsw: 0
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | pid: 20860
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | pgrp: 20860
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | corecount: 8
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | event service: False
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | sizes: {0: 2298625, 1: 2298824, 12: 2298824, 23: 2298852, 33: 2298880, 44: 2298936, 55: 2299092, 66: 2299120, 76: 2299148, 87: 2299204, 98: 2299232, 103: 2299802, 
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | --------------------------------------------------
[2025-11-23 13:44:24] 2025-11-23 12:43:50,481 | INFO     | 
[2025-11-23 13:44:24] 2025-11-23 12:43:50,482 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-23 13:44:24] 2025-11-23 12:43:50,839 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,840 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,840 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,840 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,840 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 13:44:24] 2025-11-23 12:43:50,841 | INFO     | job 6892549056 has completed (purged errors)
[2025-11-23 13:44:24] 2025-11-23 12:43:50,842 | INFO     | overall cleanup function is called
[2025-11-23 13:44:24] 2025-11-23 12:43:51,860 | INFO     | --- collectZombieJob: --- 10, [20860]
[2025-11-23 13:44:24] 2025-11-23 12:43:51,860 | INFO     | zombie collector waiting for pid 20860
[2025-11-23 13:44:24] 2025-11-23 12:43:51,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 13:44:24] 2025-11-23 12:43:51,860 | INFO     | collected zombie processes
[2025-11-23 13:44:24] 2025-11-23 12:43:51,860 | INFO     | will attempt to kill all subprocesses of pid=20860
[2025-11-23 13:44:24] 2025-11-23 12:43:51,995 | INFO     | process IDs to be killed: [20860] (in reverse order)
[2025-11-23 13:44:24] 2025-11-23 12:43:52,600 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 13:44:24] 2025-11-23 12:43:52,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 13:44:24] 2025-11-23 12:43:52,604 | INFO     | did not find any defunct processes belonging to 20860
[2025-11-23 13:44:24] 2025-11-23 12:43:52,607 | INFO     | did not find any defunct processes belonging to 20860
[2025-11-23 13:44:24] 2025-11-23 12:43:52,635 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 13:44:24] 2025-11-23 12:43:52,636 | INFO     | ready for new job
[2025-11-23 13:44:24] 2025-11-23 12:43:52,636 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 13:44:24] 2025-11-23 12:43:52,643 | INFO     | ***************************************
[2025-11-23 13:44:24] 2025-11-23 12:43:52,643 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 13:44:24] 2025-11-23 12:43:52,643 | INFO     | ***************************************
[2025-11-23 13:44:24] 2025-11-23 12:43:52,643 | INFO     | 
[2025-11-23 13:44:24] 2025-11-23 12:43:52,644 | INFO     | pilot is running in a VM
[2025-11-23 13:44:24] 2025-11-23 12:43:52,644 | INFO     | architecture information:
[2025-11-23 13:44:24] 2025-11-23 12:43:52,647 | INFO     | executing command: cat /etc/os-release
[2025-11-23 13:44:24] 2025-11-23 12:43:52,849 | INFO     | cat /etc/os-release:
[2025-11-23 13:44:24] NAME="CentOS Linux"
[2025-11-23 13:44:24] VERSION="7 (Core)"
[2025-11-23 13:44:24] ID="centos"
[2025-11-23 13:44:24] ID_LIKE="rhel fedora"
[2025-11-23 13:44:24] VERSION_ID="7"
[2025-11-23 13:44:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 13:44:24] ANSI_COLOR="0;31"
[2025-11-23 13:44:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 13:44:24] HOME_URL="https://www.centos.org/"
[2025-11-23 13:44:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 13:44:24] 
[2025-11-23 13:44:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 13:44:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 13:44:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 13:44:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 13:44:24] 
[2025-11-23 13:44:24] 2025-11-23 12:43:52,850 | INFO     | ***************************************
[2025-11-23 13:44:24] 2025-11-23 12:43:53,353 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-23 13:44:24] 2025-11-23 12:43:53,656 | INFO     | sufficient remaining disk space (495197356032 B)
[2025-11-23 13:44:24] 2025-11-23 12:43:53,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 13:44:24] 2025-11-23 12:43:53,657 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 13:44:24] 2025-11-23 12:43:53,657 | INFO     | update_server=False
[2025-11-23 13:44:24] 2025-11-23 12:43:53,657 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 13:44:24] 2025-11-23 12:43:53,788 | INFO     | all data control threads have been joined
[2025-11-23 13:44:24] 2025-11-23 12:43:53,909 | INFO     | all job control threads have been joined
[2025-11-23 13:44:24] 2025-11-23 12:43:54,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 13:44:24] 2025-11-23 12:43:54,494 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 13:44:24] 2025-11-23 12:43:54,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:44:24] 2025-11-23 12:43:54,615 | INFO     | aborting loop
[2025-11-23 13:44:24] 2025-11-23 12:43:54,629 | INFO     | all payload control threads have been joined
[2025-11-23 13:44:24] 2025-11-23 12:43:54,663 | INFO     | [job] retrieve thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:54,795 | INFO     | [data] control thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:54,915 | INFO     | [job] control thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:54,946 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:54,994 | INFO     | [job] validate thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:55,020 | INFO     | [data] copytool_in thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:55,120 | INFO     | [payload] validate_post thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:55,314 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:55,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:44:24] 2025-11-23 12:43:55,508 | INFO     | [payload] failed_post thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:55,620 | INFO     | [job] job monitor thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:55,635 | INFO     | [payload] control thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:55,680 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:56,018 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:56,246 | INFO     | [monitor] cgroup control has ended
[2025-11-23 13:44:24] 2025-11-23 12:43:56,453 | INFO     | [data] copytool_out thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:56,509 | INFO     | [job] queue monitor thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:43:58,503 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 13:44:24] 2025-11-23 12:44:00,330 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139848425936704)>', '<ExcThread(monitor, started 139848128116480)>']
[2025-11-23 13:44:24] 2025-11-23 12:44:05,356 | INFO     | all workflow threads have been joined
[2025-11-23 13:44:24] 2025-11-23 12:44:05,356 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 13:44:24] 2025-11-23 12:44:05,356 | INFO     | traces error code: 0
[2025-11-23 13:44:24] 2025-11-23 12:44:05,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 13:44:24] 2025-11-23 12:44:22,683 | INFO     | PID=14264 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 13:44:24] 2025-11-23 12:44:22,683 | INFO     | .. there are 9 such processes running
[2025-11-23 13:44:24] 2025-11-23 12:44:22,684 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 13:44:24] 2025-11-23 12:44:22,684 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 13:44:24] 2025-11-23 12:44:22,684 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 13:44:24] 2025-11-23 12:44:22,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 13:44:24] 2025-11-23 12:44:22,684 | INFO     | [monitor] control thread has ended
[2025-11-23 13:44:24] 2025-11-23 12:44:22,989 [wrapper] ==== pilot stdout END ====
[2025-11-23 13:44:24] 2025-11-23 12:44:22,998 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 13:44:24] 2025-11-23 12:44:23,054 [wrapper] pilotpid: 14264
[2025-11-23 13:44:24] 2025-11-23 12:44:23,071 [wrapper] Pilot exit status: 0
[2025-11-23 13:44:24] 2025-11-23 12:44:23,207 [wrapper] pandaids: 6892549056
[2025-11-23 13:44:24] 2025-11-23 12:44:23,278 [wrapper] cleanup supervisor_pilot   748 14265
[2025-11-23 13:44:24] 2025-11-23 12:44:23,287 [wrapper] Test setup, not cleaning
[2025-11-23 13:44:24] 2025-11-23 12:44:23,300 [wrapper] apfmon messages muted
[2025-11-23 13:44:24] 2025-11-23 12:44:23,311 [wrapper] ==== wrapper stdout END ====
[2025-11-23 13:44:24] 2025-11-23 12:44:23,373 [wrapper] ==== wrapper stderr END ====
[2025-11-23 13:44:24]  *** Error codes and diagnostics ***
[2025-11-23 13:44:24]     "exeErrorCode": 0,
[2025-11-23 13:44:24]     "exeErrorDiag": "",
[2025-11-23 13:44:24]     "pilotErrorCode": 0,
[2025-11-23 13:44:24]     "pilotErrorDiag": "",
[2025-11-23 13:44:24]  *** Listing of results directory ***
[2025-11-23 13:44:24] total 1337312
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc    576529 Nov 19 09:32 pilot3.tar.gz
[2025-11-23 13:44:24] -rwx------. 1 boinc boinc     36292 Nov 19 09:48 runpilot2-wrapper.sh
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc      5112 Nov 19 09:48 queuedata.json
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc       100 Nov 22 14:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 13:44:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 14:42 run_atlas
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc       105 Nov 22 14:42 job.xml
[2025-11-23 13:44:24] -rw-r--r--. 2 boinc boinc 410978025 Nov 22 14:42 EVNT.47493027._000349.pool.root.1
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc      6392 Nov 22 14:42 init_data.xml
[2025-11-23 13:44:24] -rw-r--r--. 2 boinc boinc     15120 Nov 22 14:42 start_atlas.sh
[2025-11-23 13:44:24] drwxrwx--x. 2 boinc boinc        68 Nov 22 14:42 shared
[2025-11-23 13:44:24] -rw-r--r--. 2 boinc boinc    590100 Nov 22 14:42 input.tar.gz
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc         0 Nov 22 14:42 boinc_lockfile
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc      2773 Nov 22 14:43 pandaJob.out
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc    989768 Nov 22 14:46 agis_schedconf.cvmfs.json
[2025-11-23 13:44:24] drwx------. 5 boinc boinc      4096 Nov 22 14:46 pilot3
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc       533 Nov 23 13:15 boinc_task_state.xml
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc 927516686 Nov 23 13:40 HITS.47493029._003446.pool.root.1
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc      1032 Nov 23 13:42 memory_monitor_summary.json
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc   1526164 Nov 23 13:42 agis_ddmendpoints.agis.ALL.json
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc   2453667 Nov 23 13:42 log.47493029._003446.job.log.tgz.1
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc        95 Nov 23 13:43 pilot_heartbeat.json
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc      7278 Nov 23 13:43 heartbeat.json
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc        29 Nov 23 13:44 wrapper_checkpoint.txt
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc      8192 Nov 23 13:44 boinc_mmap_file
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc       820 Nov 23 13:44 pilotlog.txt
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc  11050188 Nov 23 13:44 log.47493029._003446.job.log.1
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc       353 Nov 23 13:44 output.list
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc       620 Nov 23 13:44 runtime_log
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc  13527040 Nov 23 13:44 result.tar.gz
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc      8703 Nov 23 13:44 runtime_log.err
[2025-11-23 13:44:24] -rw-------. 1 boinc boinc       662 Nov 23 13:44 qr0NDm52sf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmC9FKDm1GFQ4m.diag
[2025-11-23 13:44:24] -rw-r--r--. 1 boinc boinc     21505 Nov 23 13:44 stderr.txt
[2025-11-23 13:44:25] HITS file was successfully produced:
[2025-11-23 13:44:25] -rw-------. 1 boinc boinc 927516686 Nov 23 13:40 shared/HITS.pool.root.1
[2025-11-23 13:44:25]  *** Contents of shared directory: ***
[2025-11-23 13:44:25] total 1320936
[2025-11-23 13:44:25] -rw-r--r--. 2 boinc boinc 410978025 Nov 22 14:42 ATLAS.root_0
[2025-11-23 13:44:25] -rw-r--r--. 2 boinc boinc     15120 Nov 22 14:42 start_atlas.sh
[2025-11-23 13:44:25] -rw-r--r--. 2 boinc boinc    590100 Nov 22 14:42 input.tar.gz
[2025-11-23 13:44:25] -rw-------. 1 boinc boinc 927516686 Nov 23 13:40 HITS.pool.root.1
[2025-11-23 13:44:25] -rw-------. 1 boinc boinc  13527040 Nov 23 13:44 result.tar.gz
13:44:26 (10504): run_atlas exited; CPU time 302232.439985
13:44:26 (10504): called boinc_finish(0)

</stderr_txt>
]]>

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