Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:28:13 (1690039): wrapper (7.7.26015): starting
13:28:13 (1690039): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 13:28:13] Arguments: --nthreads 8
[2025-11-19 13:28:13] Threads: 8
[2025-11-19 13:28:13] Checking for CVMFS
[2025-11-19 13:28:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 13:28:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 13:28:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 13:28:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 13:28:14] 2.13.2.0 8544 24658 120516 153053 3 130 36693187 40960000 22297 16776704 0 39729080 99.761 21199367 33681 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 13:28:14] CVMFS is ok
[2025-11-19 13:28:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 13:28:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 13:28:14] Further information can be found at the LHC@home message board.
[2025-11-19 13:28:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 13:28:14] Checking for apptainer binary...
[2025-11-19 13:28:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 13:28:14] Running /usr/bin/apptainer --version
[2025-11-19 13:28:14] apptainer version 1.4.4-1.el9
[2025-11-19 13:28:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 13:28:14] c-212-10.aglt2.org
[2025-11-19 13:28:14] apptainer works
[2025-11-19 13:28:14] Set ATHENA_PROC_NUMBER=8
[2025-11-19 13:28:14] Set ATHENA_CORE_NUMBER=8
[2025-11-19 13:28:14] Starting ATLAS job with PandaID=6892544857
[2025-11-19 13:28:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 11:39:14]  *** The last 200 lines of the pilot log: ***
[2025-11-20 11:39:14] 2025-11-20 16:38:27,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 11:39:14] 2025-11-20 16:38:29,150 | INFO     | time since job start (79796s) is within the limit (172800.0s)
[2025-11-20 11:39:14] 2025-11-20 16:38:29,707 | INFO     | monitor loop #5248: job 0:6892544857 is in state 'finished'
[2025-11-20 11:39:14] 2025-11-20 16:38:29,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 11:39:14] 2025-11-20 16:38:31,157 | INFO     | time since job start (79798s) is within the limit (172800.0s)
[2025-11-20 11:39:14] 2025-11-20 16:38:32,218 | INFO     | monitor loop #5249: job 0:6892544857 is in state 'finished'
[2025-11-20 11:39:14] 2025-11-20 16:38:32,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 11:39:14] 2025-11-20 16:38:33,165 | INFO     | time since job start (79800s) is within the limit (172800.0s)
[2025-11-20 11:39:14] 2025-11-20 16:38:34,723 | INFO     | monitor loop #5250: job 0:6892544857 is in state 'finished'
[2025-11-20 11:39:14] 2025-11-20 16:38:34,723 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 11:39:14] 2025-11-20 16:38:35,174 | INFO     | time since job start (79802s) is within the limit (172800.0s)
[2025-11-20 11:39:14] 2025-11-20 16:38:36,649 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 11:39:14] 2025-11-20 16:38:36,665 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2980.8806979166675
[2025-11-20 11:39:14] 2025-11-20 16:38:36,693 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6892544857/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 11:39:14] 2025-11-20 16:38:36,694 | INFO     | extracted standard info from prmon json
[2025-11-20 11:39:14] 2025-11-20 16:38:36,694 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 11:39:14] 2025-11-20 16:38:36,694 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 11:39:14] 2025-11-20 16:38:36,826 | INFO     | fitting pss+swap vs Time
[2025-11-20 11:39:14] 2025-11-20 16:38:36,828 | INFO     | sum of square deviations: 693969073985.4823
[2025-11-20 11:39:14] 2025-11-20 16:38:37,185 | INFO     | sum of deviations: 49945073348175.48
[2025-11-20 11:39:14] 2025-11-20 16:38:37,197 | INFO     | mean x: 1763616814.3134556
[2025-11-20 11:39:14] 2025-11-20 16:38:37,197 | INFO     | mean y: 5536175.296636086
[2025-11-20 11:39:14] 2025-11-20 16:38:37,197 | INFO     | intersect: -126922268608.70128
[2025-11-20 11:39:14] 2025-11-20 16:38:37,199 | INFO     | chi2: 97.67449808072202
[2025-11-20 11:39:14] 2025-11-20 16:38:37,200 | INFO     | sum of square deviations: 686042523213.977
[2025-11-20 11:39:14] 2025-11-20 16:38:37,185 | INFO     | time since job start (79804s) is within the limit (172800.0s)
[2025-11-20 11:39:14] 2025-11-20 16:38:37,213 | INFO     | 79807s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 11:39:14] 2025-11-20 16:38:37,246 | INFO     | monitor loop #5251: job 0:6892544857 is in state 'finished'
[2025-11-20 11:39:14] 2025-11-20 16:38:37,246 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 11:39:14] 2025-11-20 16:38:37,367 | INFO     | sum of deviations: 51005587805130.62
[2025-11-20 11:39:14] 2025-11-20 16:38:37,367 | INFO     | mean x: 1763616661.8204145
[2025-11-20 11:39:14] 2025-11-20 16:38:37,367 | INFO     | mean y: 5556577.818879508
[2025-11-20 11:39:14] 2025-11-20 16:38:37,367 | INFO     | intersect: -131115039384.15431
[2025-11-20 11:39:14] 2025-11-20 16:38:37,368 | INFO     | chi2: 90.57142935984467
[2025-11-20 11:39:14] 2025-11-20 16:38:37,369 | INFO     | current chi2=90.57142935984467 (change=7.272183487451446 %)
[2025-11-20 11:39:14] 2025-11-20 16:38:37,369 | INFO     | right removable region: 1302
[2025-11-20 11:39:14] 2025-11-20 16:38:37,474 | INFO     | sum of square deviations: 686041076293.9766
[2025-11-20 11:39:14] 2025-11-20 16:38:37,561 | INFO     | sum of deviations: 49023477170025.69
[2025-11-20 11:39:14] 2025-11-20 16:38:37,562 | INFO     | mean x: 1763616966.8204145
[2025-11-20 11:39:14] 2025-11-20 16:38:37,562 | INFO     | mean y: 5553897.520337682
[2025-11-20 11:39:14] 2025-11-20 16:38:37,562 | INFO     | intersect: -126019897197.39633
[2025-11-20 11:39:14] 2025-11-20 16:38:37,563 | INFO     | chi2: 95.36266828184418
[2025-11-20 11:39:14] 2025-11-20 16:38:37,563 | INFO     | current chi2=95.36266828184418 (change=2.366871439633354 %)
[2025-11-20 11:39:14] 2025-11-20 16:38:37,563 | INFO     | left removable region: 10
[2025-11-20 11:39:14] 2025-11-20 16:38:37,564 | INFO     | sum of square deviations: 668814697314.2178
[2025-11-20 11:39:14] 2025-11-20 16:38:37,600 | INFO     | sum of deviations: 49671450429642.32
[2025-11-20 11:39:14] 2025-11-20 16:38:37,600 | INFO     | mean x: 1763616936.3312693
[2025-11-20 11:39:14] 2025-11-20 16:38:37,600 | INFO     | mean y: 5590918.277089783
[2025-11-20 11:39:14] 2025-11-20 16:38:37,600 | INFO     | intersect: -130974502045.64894
[2025-11-20 11:39:14] 2025-11-20 16:38:37,601 | INFO     | chi2: 86.8278677930874
[2025-11-20 11:39:14] 2025-11-20 16:38:37,602 | INFO     | current memory leak: 74.27 B/s (using 1292 data points, chi2=86.83)
[2025-11-20 11:39:14] 2025-11-20 16:38:37,603 | INFO     | could have reported an average CPU frequency of 3113 MHz (47 samples)
[2025-11-20 11:39:14] 2025-11-20 16:38:37,613 | INFO     | ..............................
[2025-11-20 11:39:14] 2025-11-20 16:38:37,613 | INFO     | . Timing measurements:
[2025-11-20 11:39:14] 2025-11-20 16:38:37,613 | INFO     | . get job = 0 s
[2025-11-20 11:39:14] 2025-11-20 16:38:37,614 | INFO     | . initial setup = 3 s
[2025-11-20 11:39:14] 2025-11-20 16:38:37,614 | INFO     | . payload setup = 9 s
[2025-11-20 11:39:14] 2025-11-20 16:38:37,614 | INFO     | . stage-in = 0 s
[2025-11-20 11:39:14] 2025-11-20 16:38:37,614 | INFO     | . payload execution = 79750 s
[2025-11-20 11:39:14] 2025-11-20 16:38:37,614 | INFO     | . stage-out = 7 s
[2025-11-20 11:39:14] 2025-11-20 16:38:37,614 | INFO     | . log creation = 2 s
[2025-11-20 11:39:14] 2025-11-20 16:38:37,614 | INFO     | ..............................
[2025-11-20 11:39:14] 2025-11-20 16:38:37,898 | INFO     | 
[2025-11-20 11:39:14] 2025-11-20 16:38:37,902 | INFO     | job summary report
[2025-11-20 11:39:14] 2025-11-20 16:38:37,902 | INFO     | --------------------------------------------------
[2025-11-20 11:39:14] 2025-11-20 16:38:37,902 | INFO     | PanDA job id: 6892544857
[2025-11-20 11:39:14] 2025-11-20 16:38:37,902 | INFO     | task id: 47493029
[2025-11-20 11:39:14] 2025-11-20 16:38:37,902 | INFO     | errors: (none)
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | pilot state: finished 
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | transexitcode: 0
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | exeerrorcode: 0
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | exeerrordiag: 
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | exitcode: 0
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | exitmsg: OK
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | cpuconsumptiontime: 211098 s
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | nevents: 1000
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | neventsw: 0
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | pid: 1700232
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | pgrp: 1700232
[2025-11-20 11:39:14] 2025-11-20 16:38:37,903 | INFO     | corecount: 8
[2025-11-20 11:39:14] 2025-11-20 16:38:37,904 | INFO     | event service: False
[2025-11-20 11:39:14] 2025-11-20 16:38:37,904 | INFO     | sizes: {0: 2297200, 8: 2297462, 11: 2297490, 79761: 2360359, 79770: 2371005, 79786: 2371195}
[2025-11-20 11:39:14] 2025-11-20 16:38:37,904 | INFO     | --------------------------------------------------
[2025-11-20 11:39:14] 2025-11-20 16:38:37,904 | INFO     | 
[2025-11-20 11:39:14] 2025-11-20 16:38:37,904 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-20 11:39:14] 2025-11-20 16:38:38,090 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,090 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,090 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,090 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,090 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,092 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 11:39:14] 2025-11-20 16:38:38,092 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,092 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 11:39:14] 2025-11-20 16:38:38,092 | INFO     | job 6892544857 has completed (purged errors)
[2025-11-20 11:39:14] 2025-11-20 16:38:38,092 | INFO     | overall cleanup function is called
[2025-11-20 11:39:14] 2025-11-20 16:38:39,133 | INFO     | --- collectZombieJob: --- 10, [1700232]
[2025-11-20 11:39:14] 2025-11-20 16:38:39,133 | INFO     | zombie collector waiting for pid 1700232
[2025-11-20 11:39:14] 2025-11-20 16:38:39,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 11:39:14] 2025-11-20 16:38:39,133 | INFO     | collected zombie processes
[2025-11-20 11:39:14] 2025-11-20 16:38:39,134 | INFO     | will attempt to kill all subprocesses of pid=1700232
[2025-11-20 11:39:14] 2025-11-20 16:38:40,849 | INFO     | process IDs to be killed: [1700232] (in reverse order)
[2025-11-20 11:39:14] 2025-11-20 16:38:41,078 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 11:39:14] 2025-11-20 16:38:41,078 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 11:39:14] 2025-11-20 16:38:41,131 | INFO     | did not find any defunct processes belonging to 1700232
[2025-11-20 11:39:14] 2025-11-20 16:38:41,181 | INFO     | did not find any defunct processes belonging to 1700232
[2025-11-20 11:39:14] 2025-11-20 16:38:41,193 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 11:39:14] 2025-11-20 16:38:41,193 | INFO     | ready for new job
[2025-11-20 11:39:14] 2025-11-20 16:38:41,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 11:39:14] 2025-11-20 16:38:41,209 | INFO     | ***************************************
[2025-11-20 11:39:14] 2025-11-20 16:38:41,211 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 11:39:14] 2025-11-20 16:38:41,211 | INFO     | ***************************************
[2025-11-20 11:39:14] 2025-11-20 16:38:41,211 | INFO     | 
[2025-11-20 11:39:14] 2025-11-20 16:38:41,230 | INFO     | architecture information:
[2025-11-20 11:39:14] 2025-11-20 16:38:41,238 | INFO     | executing command: cat /etc/os-release
[2025-11-20 11:39:14] 2025-11-20 16:38:41,300 | INFO     | cat /etc/os-release:
[2025-11-20 11:39:14] NAME="CentOS Linux"
[2025-11-20 11:39:14] VERSION="7 (Core)"
[2025-11-20 11:39:14] ID="centos"
[2025-11-20 11:39:14] ID_LIKE="rhel fedora"
[2025-11-20 11:39:14] VERSION_ID="7"
[2025-11-20 11:39:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 11:39:14] ANSI_COLOR="0;31"
[2025-11-20 11:39:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 11:39:14] HOME_URL="https://www.centos.org/"
[2025-11-20 11:39:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 11:39:14] 
[2025-11-20 11:39:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 11:39:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 11:39:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 11:39:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 11:39:14] 
[2025-11-20 11:39:14] 2025-11-20 16:38:41,301 | INFO     | ***************************************
[2025-11-20 11:39:14] 2025-11-20 16:38:41,804 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-20 11:39:14] 2025-11-20 16:38:41,898 | INFO     | sufficient remaining disk space (121067536384 B)
[2025-11-20 11:39:14] 2025-11-20 16:38:41,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 11:39:14] 2025-11-20 16:38:41,902 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 11:39:14] 2025-11-20 16:38:41,902 | INFO     | update_server=False
[2025-11-20 11:39:14] 2025-11-20 16:38:41,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 11:39:14] 2025-11-20 16:38:41,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 11:39:14] 2025-11-20 16:38:41,983 | INFO     | all job control threads have been joined
[2025-11-20 11:39:14] 2025-11-20 16:38:42,218 | INFO     | all data control threads have been joined
[2025-11-20 11:39:14] 2025-11-20 16:38:42,298 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 11:39:14] 2025-11-20 16:38:42,298 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 11:39:14] 2025-11-20 16:38:42,299 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 11:39:14] 2025-11-20 16:38:42,299 | INFO     | will abort loop
[2025-11-20 11:39:14] 2025-11-20 16:38:42,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 11:39:14] 2025-11-20 16:38:42,908 | INFO     | [job] retrieve thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:42,916 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 11:39:14] 2025-11-20 16:38:42,989 | INFO     | [job] control thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:43,066 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:43,137 | INFO     | [payload] validate_post thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:43,138 | INFO     | [payload] failed_post thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:43,232 | INFO     | [data] control thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:43,271 | INFO     | [job] validate thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:43,303 | INFO     | [job] job monitor thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:43,408 | INFO     | all payload control threads have been joined
[2025-11-20 11:39:14] 2025-11-20 16:38:43,667 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:43,786 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:43,932 | INFO     | [job] queue monitor thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:44,037 | INFO     | [data] copytool_in thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:44,308 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:44,309 | INFO     | [data] copytool_out thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:44,414 | INFO     | [payload] control thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:45,912 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 11:39:14] 2025-11-20 16:38:49,786 | INFO     | [monitor] cgroup control has ended
[2025-11-20 11:39:14] 2025-11-20 16:38:51,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139878244624192)>', '<ExcThread(monitor, started 139877972678400)>']
[2025-11-20 11:39:14] 2025-11-20 16:38:56,698 | INFO     | all workflow threads have been joined
[2025-11-20 11:39:14] 2025-11-20 16:38:56,698 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 11:39:14] 2025-11-20 16:38:56,702 | INFO     | traces error code: 0
[2025-11-20 11:39:14] 2025-11-20 16:38:56,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 11:39:14] 2025-11-20 16:39:12,776 | INFO     | PID=1693754 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 11:39:14] 2025-11-20 16:39:12,776 | INFO     | .. there are 18 such processes running
[2025-11-20 11:39:14] 2025-11-20 16:39:12,777 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 11:39:14] 2025-11-20 16:39:12,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 11:39:14] 2025-11-20 16:39:12,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 11:39:14] 2025-11-20 16:39:12,777 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 11:39:14] 2025-11-20 16:39:12,777 | INFO     | [monitor] control thread has ended
[2025-11-20 11:39:14] 2025-11-20 16:39:13,470 [wrapper] ==== pilot stdout END ====
[2025-11-20 11:39:14] 2025-11-20 16:39:13,510 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 11:39:14] 2025-11-20 16:39:13,516 [wrapper] pilotpid: 1693754
[2025-11-20 11:39:14] 2025-11-20 16:39:13,530 [wrapper] Pilot exit status: 0
[2025-11-20 11:39:14] 2025-11-20 16:39:13,636 [wrapper] pandaids: 6892544857
[2025-11-20 11:39:14] 2025-11-20 16:39:13,858 [wrapper] cleanup supervisor_pilot  430748 1693755
[2025-11-20 11:39:14] 2025-11-20 16:39:13,883 [wrapper] Test setup, not cleaning
[2025-11-20 11:39:14] 2025-11-20 16:39:13,888 [wrapper] apfmon messages muted
[2025-11-20 11:39:14] 2025-11-20 16:39:13,891 [wrapper] ==== wrapper stdout END ====
[2025-11-20 11:39:14] 2025-11-20 16:39:13,894 [wrapper] ==== wrapper stderr END ====
[2025-11-20 11:39:14]  *** Error codes and diagnostics ***
[2025-11-20 11:39:14]     "exeErrorCode": 0,
[2025-11-20 11:39:14]     "exeErrorDiag": "",
[2025-11-20 11:39:14]     "pilotErrorCode": 0,
[2025-11-20 11:39:14]     "pilotErrorDiag": "",
[2025-11-20 11:39:14]  *** Listing of results directory ***
[2025-11-20 11:39:14] total 1338908
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 03:16 queuedata.json
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 03:16 pilot3.tar.gz
[2025-11-20 11:39:14] -rwx------. 1 boincer umatlas     36292 Nov 19 03:17 runpilot2-wrapper.sh
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas       100 Nov 19 13:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 11:39:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 13:28 run_atlas
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas       105 Nov 19 13:28 job.xml
[2025-11-20 11:39:14] -rw-r--r--. 2 boincer umatlas 411194991 Nov 19 13:28 EVNT.47493027._000286.pool.root.1
[2025-11-20 11:39:14] -rw-r--r--. 2 boincer umatlas    590094 Nov 19 13:28 input.tar.gz
[2025-11-20 11:39:14] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 13:28 start_atlas.sh
[2025-11-20 11:39:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 13:28 shared
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas         0 Nov 19 13:28 boinc_lockfile
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas      2773 Nov 19 13:28 pandaJob.out
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas    989434 Nov 19 13:28 agis_schedconf.cvmfs.json
[2025-11-20 11:39:14] drwx------. 5 boincer umatlas      4096 Nov 19 13:28 pilot3
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas       533 Nov 20 11:12 boinc_task_state.xml
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas 929955461 Nov 20 11:32 HITS.47493029._002819.pool.root.1
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas      6949 Nov 20 11:37 init_data.xml
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas      1078 Nov 20 11:38 memory_monitor_summary.json
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas   1526164 Nov 20 11:38 agis_ddmendpoints.agis.ALL.json
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas   2402441 Nov 20 11:38 log.47493029._002819.job.log.tgz.1
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas      8648 Nov 20 11:38 heartbeat.json
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas        29 Nov 20 11:39 wrapper_checkpoint.txt
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas        95 Nov 20 11:39 pilot_heartbeat.json
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas       823 Nov 20 11:39 pilotlog.txt
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas  10585183 Nov 20 11:39 log.47493029._002819.job.log.1
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas       353 Nov 20 11:39 output.list
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas       620 Nov 20 11:39 runtime_log
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas  13004800 Nov 20 11:39 result.tar.gz
[2025-11-20 11:39:14] -rw-------. 1 boincer umatlas       666 Nov 20 11:39 ZKcLDmKYsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmV0GKDm8Tu9Vm.diag
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas      8704 Nov 20 11:39 runtime_log.err
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 11:39 boinc_mmap_file
[2025-11-20 11:39:14] -rw-r--r--. 1 boincer umatlas     21441 Nov 20 11:39 stderr.txt
[2025-11-20 11:39:34] HITS file was successfully produced:
[2025-11-20 11:39:34] -rw-------. 1 boincer umatlas 929955461 Nov 20 11:32 shared/HITS.pool.root.1
[2025-11-20 11:39:34]  *** Contents of shared directory: ***
[2025-11-20 11:39:34] total 1323024
[2025-11-20 11:39:34] -rw-r--r--. 2 boincer umatlas 411194991 Nov 19 13:28 ATLAS.root_0
[2025-11-20 11:39:34] -rw-r--r--. 2 boincer umatlas    590094 Nov 19 13:28 input.tar.gz
[2025-11-20 11:39:34] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 13:28 start_atlas.sh
[2025-11-20 11:39:34] -rw-------. 1 boincer umatlas 929955461 Nov 20 11:32 HITS.pool.root.1
[2025-11-20 11:39:34] -rw-------. 1 boincer umatlas  13004800 Nov 20 11:39 result.tar.gz
11:39:36 (1690039): run_atlas exited; CPU time 211627.939318
11:39:36 (1690039): called boinc_finish(0)

</stderr_txt>
]]>

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