Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:02:09 (11309): wrapper (7.7.26015): starting
15:02:09 (11309): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 15:02:09] Arguments: --nthreads 8
[2025-11-22 15:02:09] Threads: 8
[2025-11-22 15:02:09] Checking for CVMFS
[2025-11-22 15:02:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 15:02:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 15:02:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 15:02:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 15:02:11] 2.11.2.0 22385 279723 144204 153173 0 272 23664272 25165825 4132 130560 3 154431739 99.883 80888048 3189 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 15:02:11] CVMFS is ok
[2025-11-22 15:02:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 15:02:11] Checking for apptainer binary...
[2025-11-22 15:02:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 15:02:11] Running /usr/bin/apptainer --version
[2025-11-22 15:02:11] apptainer version 1.3.2-1.el7
[2025-11-22 15:02:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 15:02:16] cg-vwn497.simple-grid.lan
[2025-11-22 15:02:16] apptainer works
[2025-11-22 15:02:16] Set ATHENA_PROC_NUMBER=8
[2025-11-22 15:02:16] Set ATHENA_CORE_NUMBER=8
[2025-11-22 15:02:16] Starting ATLAS job with PandaID=6892522495
[2025-11-22 15:02:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 14:20:42]  *** The last 200 lines of the pilot log: ***
[2025-11-23 14:20:42] 2025-11-23 13:19:48,772 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 14:20:42] 2025-11-23 13:19:48,955 | INFO     | time since job start (83622s) is within the limit (172800.0s)
[2025-11-23 14:20:42] 2025-11-23 13:19:49,341 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 14:20:42] 2025-11-23 13:19:49,342 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-23 14:20:42] 2025-11-23 13:19:49,350 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6892522495/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 14:20:42] 2025-11-23 13:19:49,351 | INFO     | extracted standard info from prmon json
[2025-11-23 14:20:42] 2025-11-23 13:19:49,351 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 14:20:42] 2025-11-23 13:19:49,351 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 14:20:42] 2025-11-23 13:19:49,389 | INFO     | fitting pss+swap vs Time
[2025-11-23 14:20:42] 2025-11-23 13:19:49,391 | INFO     | sum of square deviations: 781722552148.6858
[2025-11-23 14:20:42] 2025-11-23 13:19:49,446 | INFO     | sum of deviations: 3311221981481.749
[2025-11-23 14:20:42] 2025-11-23 13:19:49,447 | INFO     | mean x: 1763862356.3210874
[2025-11-23 14:20:42] 2025-11-23 13:19:49,447 | INFO     | mean y: 2859499.4650991918
[2025-11-23 14:20:42] 2025-11-23 13:19:49,447 | INFO     | intersect: -7468512268.568133
[2025-11-23 14:20:42] 2025-11-23 13:19:49,448 | INFO     | chi2: 12.980755217921018
[2025-11-23 14:20:42] 2025-11-23 13:19:49,450 | INFO     | sum of square deviations: 773139107024.9265
[2025-11-23 14:20:42] 2025-11-23 13:19:49,511 | INFO     | sum of deviations: 3755455062143.145
[2025-11-23 14:20:42] 2025-11-23 13:19:49,511 | INFO     | mean x: 1763862203.8259587
[2025-11-23 14:20:42] 2025-11-23 13:19:49,512 | INFO     | mean y: 2867392.331120944
[2025-11-23 14:20:42] 2025-11-23 13:19:49,512 | INFO     | intersect: -8564937782.821654
[2025-11-23 14:20:42] 2025-11-23 13:19:49,513 | INFO     | chi2: 10.03026971991894
[2025-11-23 14:20:42] 2025-11-23 13:19:49,513 | INFO     | current chi2=10.03026971991894 (change=22.729690595572492 %)
[2025-11-23 14:20:42] 2025-11-23 13:19:49,513 | INFO     | right removable region: 1355
[2025-11-23 14:20:42] 2025-11-23 13:19:49,515 | INFO     | sum of square deviations: 773138010244.9261
[2025-11-23 14:20:42] 2025-11-23 13:19:49,564 | INFO     | sum of deviations: 2753812125802.889
[2025-11-23 14:20:42] 2025-11-23 13:19:49,564 | INFO     | mean x: 1763862508.8259587
[2025-11-23 14:20:42] 2025-11-23 13:19:49,564 | INFO     | mean y: 2869400.872418879
[2025-11-23 14:20:42] 2025-11-23 13:19:49,564 | INFO     | intersect: -6279768240.388097
[2025-11-23 14:20:42] 2025-11-23 13:19:49,566 | INFO     | chi2: 8.538413558455263
[2025-11-23 14:20:42] 2025-11-23 13:19:49,566 | INFO     | current chi2=8.538413558455263 (change=34.22252083863912 %)
[2025-11-23 14:20:42] 2025-11-23 13:19:49,568 | INFO     | sum of square deviations: 764616539291.1031
[2025-11-23 14:20:42] 2025-11-23 13:19:49,614 | INFO     | sum of deviations: 2310999818971.054
[2025-11-23 14:20:42] 2025-11-23 13:19:49,614 | INFO     | mean x: 1763862661.330866
[2025-11-23 14:20:42] 2025-11-23 13:19:49,614 | INFO     | mean y: 2877323.2146558105
[2025-11-23 14:20:42] 2025-11-23 13:19:49,615 | INFO     | intersect: -5328273759.136597
[2025-11-23 14:20:42] 2025-11-23 13:19:49,616 | INFO     | chi2: 5.783814253148465
[2025-11-23 14:20:42] 2025-11-23 13:19:49,616 | INFO     | current chi2=5.783814253148465 (change=32.2612542300557 %)
[2025-11-23 14:20:42] 2025-11-23 13:19:49,618 | INFO     | sum of square deviations: 756158318542.0526
[2025-11-23 14:20:42] 2025-11-23 13:19:49,664 | INFO     | sum of deviations: 2178024912417.2065
[2025-11-23 14:20:42] 2025-11-23 13:19:49,665 | INFO     | mean x: 1763862813.8320951
[2025-11-23 14:20:42] 2025-11-23 13:19:49,665 | INFO     | mean y: 2879718.7265973254
[2025-11-23 14:20:42] 2025-11-23 13:19:49,665 | INFO     | intersect: -5077719219.892318
[2025-11-23 14:20:42] 2025-11-23 13:19:49,666 | INFO     | chi2: 5.538559609201884
[2025-11-23 14:20:42] 2025-11-23 13:19:49,667 | INFO     | current chi2=5.538559609201884 (change=4.240361692339534 %)
[2025-11-23 14:20:42] 2025-11-23 13:19:49,667 | INFO     | left removable region: 30
[2025-11-23 14:20:42] 2025-11-23 13:19:49,668 | INFO     | sum of square deviations: 721315880324.8486
[2025-11-23 14:20:42] 2025-11-23 13:19:49,710 | INFO     | sum of deviations: 2531160263190.577
[2025-11-23 14:20:42] 2025-11-23 13:19:49,711 | INFO     | mean x: 1763863088.338868
[2025-11-23 14:20:42] 2025-11-23 13:19:49,711 | INFO     | mean y: 2892851.8294339622
[2025-11-23 14:20:42] 2025-11-23 13:19:49,711 | INFO     | intersect: -6186656388.236217
[2025-11-23 14:20:42] 2025-11-23 13:19:49,713 | INFO     | chi2: 1.8388498727386464
[2025-11-23 14:20:42] 2025-11-23 13:19:49,713 | INFO     | current memory leak: 3.51 B/s (using 1325 data points, chi2=1.84)
[2025-11-23 14:20:42] 2025-11-23 13:19:49,715 | INFO     | could have reported an average CPU frequency of 2249 MHz (47 samples)
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | ..............................
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | . Timing measurements:
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | . get job = 0 s
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | . initial setup = 16 s
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | . payload setup = 184 s
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | . stage-in = 0 s
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | . payload execution = 83172 s
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | . stage-out = 9 s
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | . log creation = 2 s
[2025-11-23 14:20:42] 2025-11-23 13:19:49,716 | INFO     | ..............................
[2025-11-23 14:20:42] 2025-11-23 13:19:49,846 | INFO     | 
[2025-11-23 14:20:42] 2025-11-23 13:19:49,846 | INFO     | job summary report
[2025-11-23 14:20:42] 2025-11-23 13:19:49,846 | INFO     | --------------------------------------------------
[2025-11-23 14:20:42] 2025-11-23 13:19:49,846 | INFO     | PanDA job id: 6892522495
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | task id: 47493029
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | errors: (none)
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | pilot state: finished 
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | transexitcode: 0
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | exeerrorcode: 0
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | exeerrordiag: 
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | exitcode: 0
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | exitmsg: OK
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | cpuconsumptiontime: 300871 s
[2025-11-23 14:20:42] 2025-11-23 13:19:49,847 | INFO     | nevents: 1000
[2025-11-23 14:20:42] 2025-11-23 13:19:49,848 | INFO     | neventsw: 0
[2025-11-23 14:20:42] 2025-11-23 13:19:49,848 | INFO     | pid: 21975
[2025-11-23 14:20:42] 2025-11-23 13:19:49,848 | INFO     | pgrp: 21975
[2025-11-23 14:20:42] 2025-11-23 13:19:49,848 | INFO     | corecount: 8
[2025-11-23 14:20:42] 2025-11-23 13:19:49,848 | INFO     | event service: False
[2025-11-23 14:20:42] 2025-11-23 13:19:49,848 | INFO     | sizes: {0: 2298622, 1: 2298821, 12: 2298821, 23: 2298849, 33: 2298877, 44: 2298933, 55: 2299089, 66: 2299117, 71: 2299407, 76: 2299435, 83360: 2359057, 83370: 2368
[2025-11-23 14:20:42] 2025-11-23 13:19:49,848 | INFO     | --------------------------------------------------
[2025-11-23 14:20:42] 2025-11-23 13:19:49,848 | INFO     | 
[2025-11-23 14:20:42] 2025-11-23 13:19:49,848 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-23 14:20:42] 2025-11-23 13:19:50,195 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 14:20:42] 2025-11-23 13:19:50,197 | INFO     | job 6892522495 has completed (purged errors)
[2025-11-23 14:20:42] 2025-11-23 13:19:50,198 | INFO     | overall cleanup function is called
[2025-11-23 14:20:42] 2025-11-23 13:19:51,214 | INFO     | --- collectZombieJob: --- 10, [21975]
[2025-11-23 14:20:42] 2025-11-23 13:19:51,214 | INFO     | zombie collector waiting for pid 21975
[2025-11-23 14:20:42] 2025-11-23 13:19:51,214 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 14:20:42] 2025-11-23 13:19:51,215 | INFO     | collected zombie processes
[2025-11-23 14:20:42] 2025-11-23 13:19:51,215 | INFO     | will attempt to kill all subprocesses of pid=21975
[2025-11-23 14:20:42] 2025-11-23 13:19:51,324 | INFO     | process IDs to be killed: [21975] (in reverse order)
[2025-11-23 14:20:42] 2025-11-23 13:19:52,258 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 14:20:42] 2025-11-23 13:19:52,258 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 14:20:42] 2025-11-23 13:19:52,261 | INFO     | did not find any defunct processes belonging to 21975
[2025-11-23 14:20:42] 2025-11-23 13:19:52,264 | INFO     | did not find any defunct processes belonging to 21975
[2025-11-23 14:20:42] 2025-11-23 13:19:52,306 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 14:20:42] 2025-11-23 13:19:52,306 | INFO     | ready for new job
[2025-11-23 14:20:42] 2025-11-23 13:19:52,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 14:20:42] 2025-11-23 13:19:52,312 | INFO     | ***************************************
[2025-11-23 14:20:42] 2025-11-23 13:19:52,313 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 14:20:42] 2025-11-23 13:19:52,313 | INFO     | ***************************************
[2025-11-23 14:20:42] 2025-11-23 13:19:52,313 | INFO     | 
[2025-11-23 14:20:42] 2025-11-23 13:19:52,314 | INFO     | pilot is running in a VM
[2025-11-23 14:20:42] 2025-11-23 13:19:52,314 | INFO     | architecture information:
[2025-11-23 14:20:42] 2025-11-23 13:19:52,318 | INFO     | executing command: cat /etc/os-release
[2025-11-23 14:20:42] 2025-11-23 13:19:52,593 | INFO     | cat /etc/os-release:
[2025-11-23 14:20:42] NAME="CentOS Linux"
[2025-11-23 14:20:42] VERSION="7 (Core)"
[2025-11-23 14:20:42] ID="centos"
[2025-11-23 14:20:42] ID_LIKE="rhel fedora"
[2025-11-23 14:20:42] VERSION_ID="7"
[2025-11-23 14:20:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 14:20:42] ANSI_COLOR="0;31"
[2025-11-23 14:20:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 14:20:42] HOME_URL="https://www.centos.org/"
[2025-11-23 14:20:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 14:20:42] 
[2025-11-23 14:20:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 14:20:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 14:20:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 14:20:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 14:20:42] 
[2025-11-23 14:20:42] 2025-11-23 13:19:52,594 | INFO     | ***************************************
[2025-11-23 14:20:42] 2025-11-23 13:19:53,097 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-23 14:20:42] 2025-11-23 13:19:53,162 | INFO     | sufficient remaining disk space (493758709760 B)
[2025-11-23 14:20:42] 2025-11-23 13:19:53,163 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 14:20:42] 2025-11-23 13:19:53,163 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 14:20:42] 2025-11-23 13:19:53,163 | INFO     | update_server=False
[2025-11-23 14:20:42] 2025-11-23 13:19:53,163 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 14:20:42] 2025-11-23 13:19:53,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:20:42] 2025-11-23 13:19:53,163 | INFO     | aborting loop
[2025-11-23 14:20:42] 2025-11-23 13:19:53,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 14:20:42] 2025-11-23 13:19:53,187 | INFO     | all data control threads have been joined
[2025-11-23 14:20:42] 2025-11-23 13:19:53,505 | INFO     | all payload control threads have been joined
[2025-11-23 14:20:42] 2025-11-23 13:19:54,061 | INFO     | all job control threads have been joined
[2025-11-23 14:20:42] 2025-11-23 13:19:54,169 | INFO     | [job] retrieve thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:54,170 | INFO     | [job] job monitor thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:54,193 | INFO     | [data] control thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:54,222 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:54,336 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:54,354 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:54,511 | INFO     | [payload] control thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:54,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:20:42] 2025-11-23 13:19:54,864 | INFO     | [data] copytool_in thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:55,066 | INFO     | [job] control thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:55,171 | INFO     | [data] copytool_out thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:55,246 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:55,314 | INFO     | [payload] failed_post thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:55,353 | INFO     | [job] validate thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:55,484 | INFO     | [payload] validate_post thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:55,866 | INFO     | [job] queue monitor thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:19:56,395 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 14:20:42] 2025-11-23 13:20:00,404 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 14:20:42] 2025-11-23 13:20:22,152 | INFO     | PID=15168 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 14:20:42] 2025-11-23 13:20:22,153 | INFO     | .. there are 9 such processes running
[2025-11-23 14:20:42] 2025-11-23 13:20:22,153 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 14:20:42] 2025-11-23 13:20:22,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 14:20:42] 2025-11-23 13:20:22,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 14:20:42] 2025-11-23 13:20:31,791 | INFO     | [monitor] cgroup control has ended
[2025-11-23 14:20:42] 2025-11-23 13:20:33,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140147804133184)>', '<ExcThread(monitor, started 140147358148352)>']
[2025-11-23 14:20:42] 2025-11-23 13:20:34,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 14:20:42] 2025-11-23 13:20:34,225 | INFO     | [monitor] control thread has ended
[2025-11-23 14:20:42] 2025-11-23 13:20:38,281 | INFO     | all workflow threads have been joined
[2025-11-23 14:20:42] 2025-11-23 13:20:38,281 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 14:20:42] 2025-11-23 13:20:38,282 | INFO     | traces error code: 0
[2025-11-23 14:20:42] 2025-11-23 13:20:38,282 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 14:20:42] 2025-11-23 13:20:38,697 [wrapper] ==== pilot stdout END ====
[2025-11-23 14:20:42] 2025-11-23 13:20:38,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 14:20:42] 2025-11-23 13:20:38,873 [wrapper] pilotpid: 15168
[2025-11-23 14:20:42] 2025-11-23 13:20:38,933 [wrapper] Pilot exit status: 0
[2025-11-23 14:20:42] 2025-11-23 13:20:39,282 [wrapper] pandaids: 6892522495
[2025-11-23 14:20:42] 2025-11-23 13:20:39,910 [wrapper] cleanup supervisor_pilot 32059 15169
[2025-11-23 14:20:42] 2025-11-23 13:20:39,978 [wrapper] Test setup, not cleaning
[2025-11-23 14:20:42] 2025-11-23 13:20:40,087 [wrapper] apfmon messages muted
[2025-11-23 14:20:42] 2025-11-23 13:20:40,154 [wrapper] ==== wrapper stdout END ====
[2025-11-23 14:20:42] 2025-11-23 13:20:40,243 [wrapper] ==== wrapper stderr END ====
[2025-11-23 14:20:42]  *** Error codes and diagnostics ***
[2025-11-23 14:20:42]     "exeErrorCode": 0,
[2025-11-23 14:20:42]     "exeErrorDiag": "",
[2025-11-23 14:20:42]     "pilotErrorCode": 0,
[2025-11-23 14:20:42]     "pilotErrorDiag": "",
[2025-11-23 14:20:42]  *** Listing of results directory ***
[2025-11-23 14:20:42] total 1321348
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:04 queuedata.json
[2025-11-23 14:20:42] -rwx------. 1 boinc boinc     36292 Nov 19 08:05 runpilot2-wrapper.sh
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc       100 Nov 22 15:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 14:20:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 15:02 run_atlas
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc       105 Nov 22 15:02 job.xml
[2025-11-23 14:20:42] -rw-r--r--. 2 boinc boinc 410476957 Nov 22 15:02 EVNT.47493027._000042.pool.root.1
[2025-11-23 14:20:42] -rw-r--r--. 2 boinc boinc    590102 Nov 22 15:02 input.tar.gz
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc      6392 Nov 22 15:02 init_data.xml
[2025-11-23 14:20:42] -rw-r--r--. 2 boinc boinc     15120 Nov 22 15:02 start_atlas.sh
[2025-11-23 14:20:42] drwxrwx--x. 2 boinc boinc        68 Nov 22 15:02 shared
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc         0 Nov 22 15:02 boinc_lockfile
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc      2771 Nov 22 15:02 pandaJob.out
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc    989768 Nov 22 15:05 agis_schedconf.cvmfs.json
[2025-11-23 14:20:42] drwx------. 5 boinc boinc      4096 Nov 22 15:06 pilot3
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc       533 Nov 23 14:00 boinc_task_state.xml
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc 911331662 Nov 23 14:17 HITS.47493029._000374.pool.root.1
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc      1031 Nov 23 14:18 memory_monitor_summary.json
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc   1526164 Nov 23 14:18 agis_ddmendpoints.agis.ALL.json
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc   2468390 Nov 23 14:18 log.47493029._000374.job.log.tgz.1
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc      7955 Nov 23 14:19 heartbeat.json
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc        95 Nov 23 14:19 pilot_heartbeat.json
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc      8192 Nov 23 14:20 boinc_mmap_file
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc        29 Nov 23 14:20 wrapper_checkpoint.txt
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc      4885 Nov 23 14:20 pilotlog.txt
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc  11201789 Nov 23 14:20 log.47493029._000374.job.log.1
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc       353 Nov 23 14:20 output.list
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc       620 Nov 23 14:20 runtime_log
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc  13690880 Nov 23 14:20 result.tar.gz
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc      8717 Nov 23 14:20 runtime_log.err
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc       662 Nov 23 14:20 cR3KDm7Qrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBqFKDmLaQhRn.diag
[2025-11-23 14:20:42] -rw-r--r--. 1 boinc boinc     20763 Nov 23 14:20 stderr.txt
[2025-11-23 14:20:42] HITS file was successfully produced:
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc 911331662 Nov 23 14:17 shared/HITS.pool.root.1
[2025-11-23 14:20:42]  *** Contents of shared directory: ***
[2025-11-23 14:20:42] total 1304804
[2025-11-23 14:20:42] -rw-r--r--. 2 boinc boinc 410476957 Nov 22 15:02 ATLAS.root_0
[2025-11-23 14:20:42] -rw-r--r--. 2 boinc boinc    590102 Nov 22 15:02 input.tar.gz
[2025-11-23 14:20:42] -rw-r--r--. 2 boinc boinc     15120 Nov 22 15:02 start_atlas.sh
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc 911331662 Nov 23 14:17 HITS.pool.root.1
[2025-11-23 14:20:42] -rw-------. 1 boinc boinc  13690880 Nov 23 14:20 result.tar.gz
14:20:43 (11309): run_atlas exited; CPU time 301288.845673
14:20:43 (11309): called boinc_finish(0)

</stderr_txt>
]]>

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