Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:40:05 (32639): wrapper (7.7.26015): starting
00:40:05 (32639): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:40:05] Arguments: --nthreads 8
[2025-11-23 00:40:05] Threads: 8
[2025-11-23 00:40:05] Checking for CVMFS
[2025-11-23 00:40:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:40:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:40:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:40:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:40:07] 2.11.2.0 19422 280262 142220 153190 0 128 19088107 25165825 4290 130560 2 136633900 99.874 80930508 3203 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 00:40:07] CVMFS is ok
[2025-11-23 00:40:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:40:07] Checking for apptainer binary...
[2025-11-23 00:40:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:40:07] Running /usr/bin/apptainer --version
[2025-11-23 00:40:07] apptainer version 1.3.2-1.el7
[2025-11-23 00:40:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:40:09] cg-vwn320.simple-grid.lan
[2025-11-23 00:40:09] apptainer works
[2025-11-23 00:40:09] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:40:09] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:40:09] Starting ATLAS job with PandaID=6892546735
[2025-11-23 00:40:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:04:50]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:04:50] 2025-11-24 01:04:04,486 | INFO     | time since job start (91261s) is within the limit (172800.0s)
[2025-11-24 02:04:50] 2025-11-24 01:04:04,530 | INFO     | sum of deviations: 4476794795943.728
[2025-11-24 02:04:50] 2025-11-24 01:04:04,531 | INFO     | mean x: 1763900827.3250504
[2025-11-24 02:04:50] 2025-11-24 01:04:04,531 | INFO     | mean y: 2863197.436534587
[2025-11-24 02:04:50] 2025-11-24 01:04:04,531 | INFO     | intersect: -7711145388.401166
[2025-11-24 02:04:50] 2025-11-24 01:04:04,533 | INFO     | chi2: 11.850179979108757
[2025-11-24 02:04:50] 2025-11-24 01:04:04,535 | INFO     | sum of square deviations: 1013395774469.867
[2025-11-24 02:04:50] 2025-11-24 01:04:04,598 | INFO     | sum of deviations: 4969559556247.885
[2025-11-24 02:04:50] 2025-11-24 01:04:04,598 | INFO     | mean x: 1763900674.8295147
[2025-11-24 02:04:50] 2025-11-24 01:04:04,599 | INFO     | mean y: 2870508.450134771
[2025-11-24 02:04:50] 2025-11-24 01:04:04,599 | INFO     | intersect: -8647066343.17797
[2025-11-24 02:04:50] 2025-11-24 01:04:04,601 | INFO     | chi2: 8.791916891610992
[2025-11-24 02:04:50] 2025-11-24 01:04:04,601 | INFO     | current chi2=8.791916891610992 (change=25.807735349921458 %)
[2025-11-24 02:04:50] 2025-11-24 01:04:04,603 | INFO     | sum of square deviations: 1003187608070.9987
[2025-11-24 02:04:50] 2025-11-24 01:04:04,664 | INFO     | sum of deviations: 5289200291311.367
[2025-11-24 02:04:50] 2025-11-24 01:04:04,665 | INFO     | mean x: 1763900522.3340094
[2025-11-24 02:04:50] 2025-11-24 01:04:04,665 | INFO     | mean y: 2875278.964841109
[2025-11-24 02:04:50] 2025-11-24 01:04:04,665 | INFO     | intersect: -9297103191.176935
[2025-11-24 02:04:50] 2025-11-24 01:04:04,667 | INFO     | chi2: 7.044735266844999
[2025-11-24 02:04:50] 2025-11-24 01:04:04,667 | INFO     | current chi2=7.044735266844999 (change=19.872590315692204 %)
[2025-11-24 02:04:50] 2025-11-24 01:04:04,667 | INFO     | right removable region: 1478
[2025-11-24 02:04:50] 2025-11-24 01:04:04,670 | INFO     | sum of square deviations: 1013394570939.8682
[2025-11-24 02:04:50] 2025-11-24 01:04:04,730 | INFO     | monitor loop #6089: job 0:6892546735 is in state 'finished'
[2025-11-24 02:04:50] 2025-11-24 01:04:04,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:04:50] 2025-11-24 01:04:04,733 | INFO     | sum of deviations: 3856042324946.1064
[2025-11-24 02:04:50] 2025-11-24 01:04:04,733 | INFO     | mean x: 1763900979.8295147
[2025-11-24 02:04:50] 2025-11-24 01:04:04,733 | INFO     | mean y: 2872406.901617251
[2025-11-24 02:04:50] 2025-11-24 01:04:04,733 | INFO     | intersect: -6708903075.503359
[2025-11-24 02:04:50] 2025-11-24 01:04:04,735 | INFO     | chi2: 7.276276659842877
[2025-11-24 02:04:50] 2025-11-24 01:04:04,736 | INFO     | current chi2=7.276276659842877 (change=38.59775402001851 %)
[2025-11-24 02:04:50] 2025-11-24 01:04:04,738 | INFO     | sum of square deviations: 1003185201010.999
[2025-11-24 02:04:50] 2025-11-24 01:04:04,799 | INFO     | sum of deviations: 3436639191985.5835
[2025-11-24 02:04:50] 2025-11-24 01:04:04,800 | INFO     | mean x: 1763901132.3340094
[2025-11-24 02:04:50] 2025-11-24 01:04:04,800 | INFO     | mean y: 2878670.0858688303
[2025-11-24 02:04:50] 2025-11-24 01:04:04,800 | INFO     | intersect: -6039766053.996681
[2025-11-24 02:04:50] 2025-11-24 01:04:04,802 | INFO     | chi2: 5.297147589431627
[2025-11-24 02:04:50] 2025-11-24 01:04:04,802 | INFO     | current chi2=5.297147589431627 (change=27.199750132287953 %)
[2025-11-24 02:04:50] 2025-11-24 01:04:04,804 | INFO     | sum of square deviations: 993045074172.9396
[2025-11-24 02:04:50] 2025-11-24 01:04:04,870 | INFO     | sum of deviations: 3332240850426.4893
[2025-11-24 02:04:50] 2025-11-24 01:04:04,870 | INFO     | mean x: 1763901284.8351424
[2025-11-24 02:04:50] 2025-11-24 01:04:04,870 | INFO     | mean y: 2880239.9443690637
[2025-11-24 02:04:50] 2025-11-24 01:04:04,870 | INFO     | intersect: -5916029254.010603
[2025-11-24 02:04:50] 2025-11-24 01:04:04,872 | INFO     | chi2: 5.239206320862198
[2025-11-24 02:04:50] 2025-11-24 01:04:04,873 | INFO     | current chi2=5.239206320862198 (change=1.0938201662537683 %)
[2025-11-24 02:04:50] 2025-11-24 01:04:04,873 | INFO     | left removable region: 30
[2025-11-24 02:04:50] 2025-11-24 01:04:04,875 | INFO     | sum of square deviations: 941418788934.0999
[2025-11-24 02:04:50] 2025-11-24 01:04:04,939 | INFO     | sum of deviations: 3893975548312.382
[2025-11-24 02:04:50] 2025-11-24 01:04:04,939 | INFO     | mean x: 1763901406.8425415
[2025-11-24 02:04:50] 2025-11-24 01:04:04,939 | INFO     | mean y: 2896492.3218232044
[2025-11-24 02:04:50] 2025-11-24 01:04:04,939 | INFO     | intersect: -7293100813.675726
[2025-11-24 02:04:50] 2025-11-24 01:04:04,941 | INFO     | chi2: 0.2863102557694075
[2025-11-24 02:04:50] 2025-11-24 01:04:04,942 | INFO     | current memory leak: 4.14 B/s (using 1448 data points, chi2=0.29)
[2025-11-24 02:04:50] 2025-11-24 01:04:04,945 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-24 02:04:50] 2025-11-24 01:04:04,945 | INFO     | ..............................
[2025-11-24 02:04:50] 2025-11-24 01:04:04,945 | INFO     | . Timing measurements:
[2025-11-24 02:04:50] 2025-11-24 01:04:04,945 | INFO     | . get job = 0 s
[2025-11-24 02:04:50] 2025-11-24 01:04:04,945 | INFO     | . initial setup = 11 s
[2025-11-24 02:04:50] 2025-11-24 01:04:04,945 | INFO     | . payload setup = 129 s
[2025-11-24 02:04:50] 2025-11-24 01:04:04,946 | INFO     | . stage-in = 0 s
[2025-11-24 02:04:50] 2025-11-24 01:04:04,946 | INFO     | . payload execution = 90931 s
[2025-11-24 02:04:50] 2025-11-24 01:04:04,946 | INFO     | . stage-out = 4 s
[2025-11-24 02:04:50] 2025-11-24 01:04:04,946 | INFO     | . log creation = 1 s
[2025-11-24 02:04:50] 2025-11-24 01:04:04,946 | INFO     | ..............................
[2025-11-24 02:04:50] 2025-11-24 01:04:05,215 | INFO     | 
[2025-11-24 02:04:50] 2025-11-24 01:04:05,216 | INFO     | job summary report
[2025-11-24 02:04:50] 2025-11-24 01:04:05,216 | INFO     | --------------------------------------------------
[2025-11-24 02:04:50] 2025-11-24 01:04:05,216 | INFO     | PanDA job id: 6892546735
[2025-11-24 02:04:50] 2025-11-24 01:04:05,216 | INFO     | task id: 47493029
[2025-11-24 02:04:50] 2025-11-24 01:04:05,216 | INFO     | errors: (none)
[2025-11-24 02:04:50] 2025-11-24 01:04:05,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:04:50] 2025-11-24 01:04:05,216 | INFO     | pilot state: finished 
[2025-11-24 02:04:50] 2025-11-24 01:04:05,216 | INFO     | transexitcode: 0
[2025-11-24 02:04:50] 2025-11-24 01:04:05,216 | INFO     | exeerrorcode: 0
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | exeerrordiag: 
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | exitcode: 0
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | exitmsg: OK
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | cpuconsumptiontime: 338828 s
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | nevents: 1000
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | neventsw: 0
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | pid: 11328
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | pgrp: 11328
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | corecount: 8
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | event service: False
[2025-11-24 02:04:50] 2025-11-24 01:04:05,217 | INFO     | sizes: {0: 2298574, 1: 2298773, 12: 2298773, 23: 2298801, 34: 2298829, 44: 2298857, 55: 2299013, 66: 2299041, 77: 2299069, 87: 2299125, 91: 2299415, 98: 2299723, 9
[2025-11-24 02:04:50] 2025-11-24 01:04:05,218 | INFO     | --------------------------------------------------
[2025-11-24 02:04:50] 2025-11-24 01:04:05,218 | INFO     | 
[2025-11-24 02:04:50] 2025-11-24 01:04:05,218 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-24 02:04:50] 2025-11-24 01:04:05,426 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,426 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,426 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,427 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,428 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,428 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:04:50] 2025-11-24 01:04:05,428 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,428 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:04:50] 2025-11-24 01:04:05,429 | INFO     | job 6892546735 has completed (purged errors)
[2025-11-24 02:04:50] 2025-11-24 01:04:05,429 | INFO     | overall cleanup function is called
[2025-11-24 02:04:50] 2025-11-24 01:04:06,448 | INFO     | --- collectZombieJob: --- 10, [11328]
[2025-11-24 02:04:50] 2025-11-24 01:04:06,449 | INFO     | zombie collector waiting for pid 11328
[2025-11-24 02:04:50] 2025-11-24 01:04:06,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:04:50] 2025-11-24 01:04:06,449 | INFO     | collected zombie processes
[2025-11-24 02:04:50] 2025-11-24 01:04:06,449 | INFO     | will attempt to kill all subprocesses of pid=11328
[2025-11-24 02:04:50] 2025-11-24 01:04:06,569 | INFO     | process IDs to be killed: [11328] (in reverse order)
[2025-11-24 02:04:50] 2025-11-24 01:04:06,693 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:04:50] 2025-11-24 01:04:06,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:04:50] 2025-11-24 01:04:06,698 | INFO     | did not find any defunct processes belonging to 11328
[2025-11-24 02:04:50] 2025-11-24 01:04:06,702 | INFO     | did not find any defunct processes belonging to 11328
[2025-11-24 02:04:50] 2025-11-24 01:04:06,712 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:04:50] 2025-11-24 01:04:06,713 | INFO     | ready for new job
[2025-11-24 02:04:50] 2025-11-24 01:04:06,713 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:04:50] 2025-11-24 01:04:06,722 | INFO     | ***************************************
[2025-11-24 02:04:50] 2025-11-24 01:04:06,722 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:04:50] 2025-11-24 01:04:06,722 | INFO     | ***************************************
[2025-11-24 02:04:50] 2025-11-24 01:04:06,723 | INFO     | 
[2025-11-24 02:04:50] 2025-11-24 01:04:06,723 | INFO     | pilot is running in a VM
[2025-11-24 02:04:50] 2025-11-24 01:04:06,723 | INFO     | architecture information:
[2025-11-24 02:04:50] 2025-11-24 01:04:06,724 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:04:50] 2025-11-24 01:04:06,771 | INFO     | cat /etc/os-release:
[2025-11-24 02:04:50] NAME="CentOS Linux"
[2025-11-24 02:04:50] VERSION="7 (Core)"
[2025-11-24 02:04:50] ID="centos"
[2025-11-24 02:04:50] ID_LIKE="rhel fedora"
[2025-11-24 02:04:50] VERSION_ID="7"
[2025-11-24 02:04:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:04:50] ANSI_COLOR="0;31"
[2025-11-24 02:04:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:04:50] HOME_URL="https://www.centos.org/"
[2025-11-24 02:04:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:04:50] 
[2025-11-24 02:04:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:04:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:04:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:04:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:04:50] 
[2025-11-24 02:04:50] 2025-11-24 01:04:06,772 | INFO     | ***************************************
[2025-11-24 02:04:50] 2025-11-24 01:04:07,275 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-24 02:04:50] 2025-11-24 01:04:07,311 | INFO     | sufficient remaining disk space (495167995904 B)
[2025-11-24 02:04:50] 2025-11-24 01:04:07,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:04:50] 2025-11-24 01:04:07,312 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:04:50] 2025-11-24 01:04:07,312 | INFO     | update_server=False
[2025-11-24 02:04:50] 2025-11-24 01:04:07,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:04:50] 2025-11-24 01:04:07,685 | INFO     | all job control threads have been joined
[2025-11-24 02:04:50] 2025-11-24 01:04:07,700 | INFO     | all data control threads have been joined
[2025-11-24 02:04:50] 2025-11-24 01:04:07,776 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:04:50] 2025-11-24 01:04:07,973 | INFO     | all payload control threads have been joined
[2025-11-24 02:04:50] 2025-11-24 01:04:08,198 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:04:50] 2025-11-24 01:04:08,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:04:50] 2025-11-24 01:04:08,244 | INFO     | aborting loop
[2025-11-24 02:04:50] 2025-11-24 01:04:08,318 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:08,372 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:08,415 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:08,691 | INFO     | [job] control thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:08,706 | INFO     | [data] control thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:08,978 | INFO     | [payload] control thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:08,980 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:09,126 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:09,160 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:09,250 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:09,464 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:09,558 | INFO     | [job] validate thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:09,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:09,784 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:10,102 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:04:50] 2025-11-24 01:04:11,108 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:12,207 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:04:50] 2025-11-24 01:04:37,742 | INFO     | PID=4169 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 02:04:50] 2025-11-24 01:04:37,743 | INFO     | .. there are 9 such processes running
[2025-11-24 02:04:50] 2025-11-24 01:04:37,744 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:04:50] 2025-11-24 01:04:37,745 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:04:50] 2025-11-24 01:04:37,745 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:04:50] 2025-11-24 01:04:43,032 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:04:50] 2025-11-24 01:04:43,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139826759169856)>', '<ExcThread(monitor, started 139826468738816)>']
[2025-11-24 02:04:50] 2025-11-24 01:04:44,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:04:50] 2025-11-24 01:04:44,786 | INFO     | [monitor] control thread has ended
[2025-11-24 02:04:50] 2025-11-24 01:04:48,808 | INFO     | all workflow threads have been joined
[2025-11-24 02:04:50] 2025-11-24 01:04:48,809 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:04:50] 2025-11-24 01:04:48,809 | INFO     | traces error code: 0
[2025-11-24 02:04:50] 2025-11-24 01:04:48,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:04:50] 2025-11-24 01:04:49,186 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:04:50] 2025-11-24 01:04:49,195 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:04:50] 2025-11-24 01:04:49,205 [wrapper] pilotpid: 4169
[2025-11-24 02:04:50] 2025-11-24 01:04:49,217 [wrapper] Pilot exit status: 0
[2025-11-24 02:04:50] 2025-11-24 01:04:49,485 [wrapper] pandaids: 6892546735
[2025-11-24 02:04:50] 2025-11-24 01:04:49,569 [wrapper] cleanup supervisor_pilot 21224 4170
[2025-11-24 02:04:50] 2025-11-24 01:04:49,614 [wrapper] Test setup, not cleaning
[2025-11-24 02:04:50] 2025-11-24 01:04:49,688 [wrapper] apfmon messages muted
[2025-11-24 02:04:50] 2025-11-24 01:04:49,753 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:04:50] 2025-11-24 01:04:49,769 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:04:50]  *** Error codes and diagnostics ***
[2025-11-24 02:04:50]     "exeErrorCode": 0,
[2025-11-24 02:04:50]     "exeErrorDiag": "",
[2025-11-24 02:04:50]     "pilotErrorCode": 0,
[2025-11-24 02:04:50]     "pilotErrorDiag": "",
[2025-11-24 02:04:50]  *** Listing of results directory ***
[2025-11-24 02:04:50] total 1331724
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc    576529 Nov 19 09:16 pilot3.tar.gz
[2025-11-24 02:04:50] -rwx------. 1 boinc boinc     36292 Nov 19 09:28 runpilot2-wrapper.sh
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc      5112 Nov 19 09:28 queuedata.json
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc       100 Nov 23 00:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:04:50] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 00:40 run_atlas
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc       105 Nov 23 00:40 job.xml
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc      6391 Nov 23 00:40 init_data.xml
[2025-11-24 02:04:50] -rw-r--r--. 2 boinc boinc 410313556 Nov 23 00:40 EVNT.47493027._000304.pool.root.1
[2025-11-24 02:04:50] -rw-r--r--. 2 boinc boinc     15120 Nov 23 00:40 start_atlas.sh
[2025-11-24 02:04:50] drwxrwx--x. 2 boinc boinc        68 Nov 23 00:40 shared
[2025-11-24 02:04:50] -rw-r--r--. 2 boinc boinc    590093 Nov 23 00:40 input.tar.gz
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc         0 Nov 23 00:40 boinc_lockfile
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc      2772 Nov 23 00:40 pandaJob.out
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc    989784 Nov 23 00:42 agis_schedconf.cvmfs.json
[2025-11-24 02:04:50] drwx------. 5 boinc boinc      4096 Nov 23 00:43 pilot3
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc       533 Nov 24 01:52 boinc_task_state.xml
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc 920129774 Nov 24 02:02 HITS.47493029._002992.pool.root.1
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc      1031 Nov 24 02:03 memory_monitor_summary.json
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc   1526164 Nov 24 02:03 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc   2558525 Nov 24 02:03 log.47493029._002992.job.log.tgz.1
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc      8631 Nov 24 02:04 heartbeat.json
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc        29 Nov 24 02:04 wrapper_checkpoint.txt
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc        95 Nov 24 02:04 pilot_heartbeat.json
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc      4883 Nov 24 02:04 pilotlog.txt
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc  12105182 Nov 24 02:04 log.47493029._002992.job.log.1
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc       353 Nov 24 02:04 output.list
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc       620 Nov 24 02:04 runtime_log
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc  14684160 Nov 24 02:04 result.tar.gz
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc      8703 Nov 24 02:04 runtime_log.err
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc       662 Nov 24 02:04 I1gLDmQjsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmN6FKDmDnuxon.diag
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc      8192 Nov 24 02:04 boinc_mmap_file
[2025-11-24 02:04:50] -rw-r--r--. 1 boinc boinc     20917 Nov 24 02:04 stderr.txt
[2025-11-24 02:04:50] HITS file was successfully produced:
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc 920129774 Nov 24 02:02 shared/HITS.pool.root.1
[2025-11-24 02:04:50]  *** Contents of shared directory: ***
[2025-11-24 02:04:50] total 1314204
[2025-11-24 02:04:50] -rw-r--r--. 2 boinc boinc 410313556 Nov 23 00:40 ATLAS.root_0
[2025-11-24 02:04:50] -rw-r--r--. 2 boinc boinc     15120 Nov 23 00:40 start_atlas.sh
[2025-11-24 02:04:50] -rw-r--r--. 2 boinc boinc    590093 Nov 23 00:40 input.tar.gz
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc 920129774 Nov 24 02:02 HITS.pool.root.1
[2025-11-24 02:04:50] -rw-------. 1 boinc boinc  14684160 Nov 24 02:04 result.tar.gz
02:04:51 (32639): run_atlas exited; CPU time 339377.736327
02:04:51 (32639): called boinc_finish(0)

</stderr_txt>
]]>

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