Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:27:37 (3653703): wrapper (7.7.26015): starting
19:27:37 (3653703): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 19:27:37] Arguments: --nthreads 3
[2025-11-19 19:27:37] Threads: 3
[2025-11-19 19:27:37] Checking for CVMFS
[2025-11-19 19:27:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:27:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:27:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:27:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:27:37] 2.9.2.0 4099368 1448 76972 153052 3 88 34325795 36864001 0 130560 0 11250829 99.987 186409 4304 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 19:27:37] CVMFS is ok
[2025-11-19 19:27:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 19:27:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 19:27:37] Further information can be found at the LHC@home message board.
[2025-11-19 19:27:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:27:37] Checking for apptainer binary...
[2025-11-19 19:27:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:27:37] Running /usr/bin/apptainer --version
[2025-11-19 19:27:38] apptainer version 1.4.1-1.1
[2025-11-19 19:27:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:27:38] thA335
[2025-11-19 19:27:38] apptainer works
[2025-11-19 19:27:38] Set ATHENA_PROC_NUMBER=3
[2025-11-19 19:27:38] Set ATHENA_CORE_NUMBER=3
[2025-11-19 19:27:38] Starting ATLAS job with PandaID=6892543851
[2025-11-19 19:27:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 19:31:55]  *** The last 200 lines of the pilot log: ***
[2025-11-19 19:31:55] 2025-11-19 18:31:05,216 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-19 19:31:55] 2025-11-19 18:31:05,252 | INFO     | sufficient remaining disk space (827736457216 B)
[2025-11-19 19:31:55] 2025-11-19 18:31:05,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 19:31:55] 2025-11-19 18:31:05,253 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 19:31:55] 2025-11-19 18:31:05,254 | INFO     | update_server=False
[2025-11-19 19:31:55] 2025-11-19 18:31:05,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 19:31:55] 2025-11-19 18:31:05,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 19:31:55] 2025-11-19 18:31:05,255 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 19:31:55] 2025-11-19 18:31:05,662 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 19:31:55] 2025-11-19 18:31:05,662 | INFO     | aborting loop
[2025-11-19 19:31:55] 2025-11-19 18:31:05,730 | INFO     | all job control threads have been joined
[2025-11-19 19:31:55] 2025-11-19 18:31:05,930 | INFO     | all data control threads have been joined
[2025-11-19 19:31:55] 2025-11-19 18:31:06,260 | INFO     | [job] retrieve thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:06,261 | INFO     | [job] queue monitor thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:06,285 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:06,433 | INFO     | [payload] failed_post thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:06,527 | INFO     | [data] copytool_in thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:06,655 | INFO     | all payload control threads have been joined
[2025-11-19 19:31:55] 2025-11-19 18:31:06,668 | INFO     | [job] job monitor thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:06,737 | INFO     | [job] control thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:06,848 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 19:31:55] 2025-11-19 18:31:06,936 | INFO     | [data] control thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:07,261 | INFO     | [data] copytool_out thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:07,392 | INFO     | [payload] validate_post thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:07,437 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:07,456 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:07,645 | INFO     | [job] validate thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:07,661 | INFO     | [payload] control thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:07,716 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:10,855 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 19:31:55] 2025-11-19 18:31:36,345 | INFO     | PID=3657445 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 19:31:55] 2025-11-19 18:31:36,345 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 19:31:55] 2025-11-19 18:31:36,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 19:31:55] 2025-11-19 18:31:36,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 19:31:55] 2025-11-19 18:31:49,458 | INFO     | [monitor] cgroup control has ended
[2025-11-19 19:31:55] 2025-11-19 18:31:50,774 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140221204432704)>', '<ExcThread(monitor, started 140220414555904)>']
[2025-11-19 19:31:55] 2025-11-19 18:31:51,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 19:31:55] 2025-11-19 18:31:51,415 | INFO     | [monitor] control thread has ended
[2025-11-19 19:31:55] 2025-11-19 18:31:55,799 | INFO     | all workflow threads have been joined
[2025-11-19 19:31:55] 2025-11-19 18:31:55,800 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 19:31:55] 2025-11-19 18:31:55,801 | INFO     | traces error code: 0
[2025-11-19 19:31:55] 2025-11-19 18:31:55,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 19:31:55] 2025-11-19 18:31:55,846 [wrapper] ==== pilot stdout END ====
[2025-11-19 19:31:55] 2025-11-19 18:31:55,850 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 19:31:55] 2025-11-19 18:31:55,853 [wrapper] pilotpid: 3657445
[2025-11-19 19:31:55] 2025-11-19 18:31:55,856 [wrapper] Pilot exit status: 0
[2025-11-19 19:31:55] 2025-11-19 18:31:55,863 [wrapper] pandaids: 6892543851
[2025-11-19 19:31:55] 2025-11-19 18:31:55,880 [wrapper] cleanup supervisor_pilot 3657451 3657446
[2025-11-19 19:31:55] 2025-11-19 18:31:55,882 [wrapper] Test setup, not cleaning
[2025-11-19 19:31:55] 2025-11-19 18:31:55,885 [wrapper] apfmon messages muted
[2025-11-19 19:31:55] 2025-11-19 18:31:55,888 [wrapper] ==== wrapper stdout END ====
[2025-11-19 19:31:55] 2025-11-19 18:31:55,891 [wrapper] ==== wrapper stderr END ====
[2025-11-19 19:31:55]  *** Error codes and diagnostics ***
[2025-11-19 19:31:55]     "exeErrorCode": 65,
[2025-11-19 19:31:55]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 19:31:55]     "pilotErrorCode": 1305,
[2025-11-19 19:31:55]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 19:31:55]  *** Listing of results directory ***
[2025-11-19 19:31:55] total 402216
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:46 pilot3.tar.gz
[2025-11-19 19:31:55] -rwx------ 1 boinc boinc     36292 Nov 19 08:58 runpilot2-wrapper.sh
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:58 queuedata.json
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc       100 Nov 19 19:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 19:31:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 19:27 run_atlas
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc       105 Nov 19 19:27 job.xml
[2025-11-19 19:31:55] -rw-r--r-- 2 boinc boinc 407660586 Nov 19 19:27 EVNT.47493027._000263.pool.root.1
[2025-11-19 19:31:55] -rw-r--r-- 2 boinc boinc    590100 Nov 19 19:27 input.tar.gz
[2025-11-19 19:31:55] -rw-r--r-- 2 boinc boinc     15120 Nov 19 19:27 start_atlas.sh
[2025-11-19 19:31:55] drwxrwx--x 2 boinc boinc      4096 Nov 19 19:27 shared
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc         0 Nov 19 19:27 boinc_setup_complete
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc      6194 Nov 19 19:27 init_data.xml
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc         0 Nov 19 19:27 boinc_lockfile
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc      2772 Nov 19 19:27 pandaJob.out
[2025-11-19 19:31:55] -rw------- 1 boinc boinc    989434 Nov 19 19:27 agis_schedconf.cvmfs.json
[2025-11-19 19:31:55] -rw------- 1 boinc boinc   1525063 Nov 19 19:27 agis_ddmendpoints.agis.ALL.json
[2025-11-19 19:31:55] drwx------ 5 boinc boinc      4096 Nov 19 19:27 pilot3
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc       522 Nov 19 19:28 boinc_task_state.xml
[2025-11-19 19:31:55] -rw------- 1 boinc boinc       966 Nov 19 19:28 memory_monitor_summary.json
[2025-11-19 19:31:55] -rw------- 1 boinc boinc     55935 Nov 19 19:28 log.47493029._002590.job.log.tgz.1
[2025-11-19 19:31:55] -rw------- 1 boinc boinc        95 Nov 19 19:30 pilot_heartbeat.json
[2025-11-19 19:31:55] -rw------- 1 boinc boinc      8411 Nov 19 19:31 heartbeat.json
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc      8192 Nov 19 19:31 boinc_mmap_file
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc        22 Nov 19 19:31 wrapper_checkpoint.txt
[2025-11-19 19:31:55] -rw------- 1 boinc boinc      4752 Nov 19 19:31 pilotlog.txt
[2025-11-19 19:31:55] -rw------- 1 boinc boinc     93504 Nov 19 19:31 log.47493029._002590.job.log.1
[2025-11-19 19:31:55] -rw------- 1 boinc boinc       186 Nov 19 19:31 output.list
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc       620 Nov 19 19:31 runtime_log
[2025-11-19 19:31:55] -rw------- 1 boinc boinc    174080 Nov 19 19:31 result.tar.gz
[2025-11-19 19:31:55] -rw------- 1 boinc boinc       649 Nov 19 19:31 tA7LDmaGsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZ3FKDm1Rquwn.diag
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc      8624 Nov 19 19:31 runtime_log.err
[2025-11-19 19:31:55] -rw-r--r-- 1 boinc boinc      8240 Nov 19 19:31 stderr.txt
[2025-11-19 19:31:55] No HITS result produced
[2025-11-19 19:31:55]  *** Contents of shared directory: ***
[2025-11-19 19:31:55] total 398880
[2025-11-19 19:31:55] -rw-r--r-- 2 boinc boinc 407660586 Nov 19 19:27 ATLAS.root_0
[2025-11-19 19:31:55] -rw-r--r-- 2 boinc boinc    590100 Nov 19 19:27 input.tar.gz
[2025-11-19 19:31:55] -rw-r--r-- 2 boinc boinc     15120 Nov 19 19:27 start_atlas.sh
[2025-11-19 19:31:55] -rw------- 1 boinc boinc    174080 Nov 19 19:31 result.tar.gz
19:31:57 (3653703): run_atlas exited; CPU time 31.885651
19:31:57 (3653703): called boinc_finish(0)

</stderr_txt>
]]>

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