Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:56:18 (9032): wrapper (7.7.26015): starting
20:56:18 (9032): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 20:56:18] Arguments: --nthreads 8
[2025-11-22 20:56:18] Threads: 8
[2025-11-22 20:56:18] Checking for CVMFS
[2025-11-22 20:56:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:56:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:56:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:56:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:56:21] 2.11.2.0 570 279896 138236 153183 3 246 22378542 25165824 3952 130560 2 122175986 99.874 80296603 3096 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 20:56:21] CVMFS is ok
[2025-11-22 20:56:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:56:21] Checking for apptainer binary...
[2025-11-22 20:56:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:56:21] Running /usr/bin/apptainer --version
[2025-11-22 20:56:21] apptainer version 1.3.2-1.el7
[2025-11-22 20:56:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:56:38] cg-vwn366.simple-grid.lan
[2025-11-22 20:56:38] apptainer works
[2025-11-22 20:56:38] Set ATHENA_PROC_NUMBER=8
[2025-11-22 20:56:38] Set ATHENA_CORE_NUMBER=8
[2025-11-22 20:56:38] Starting ATLAS job with PandaID=6892522068
[2025-11-22 20:56:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:51:24]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:51:24] 2025-11-23 20:50:38,796 | INFO     | time since job start (89416s) is within the limit (172800.0s)
[2025-11-23 21:51:24] 2025-11-23 20:50:40,684 | INFO     | monitor loop #6034: job 0:6892522068 is in state 'finished'
[2025-11-23 21:51:24] 2025-11-23 20:50:40,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:51:24] 2025-11-23 20:50:40,803 | INFO     | time since job start (89418s) is within the limit (172800.0s)
[2025-11-23 21:51:24] 2025-11-23 20:50:42,812 | INFO     | time since job start (89420s) is within the limit (172800.0s)
[2025-11-23 21:51:24] 2025-11-23 20:50:43,192 | INFO     | monitor loop #6035: job 0:6892522068 is in state 'finished'
[2025-11-23 21:51:24] 2025-11-23 20:50:43,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:51:24] 2025-11-23 20:50:44,822 | INFO     | time since job start (89422s) is within the limit (172800.0s)
[2025-11-23 21:51:24] 2025-11-23 20:50:45,696 | INFO     | monitor loop #6036: job 0:6892522068 is in state 'finished'
[2025-11-23 21:51:24] 2025-11-23 20:50:45,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:51:24] 2025-11-23 20:50:46,047 | INFO     | PID=12883 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 21:51:24] 2025-11-23 20:50:46,047 | INFO     | .. there are 9 such processes running
[2025-11-23 21:51:24] 2025-11-23 20:50:47,048 | INFO     | time since job start (89425s) is within the limit (172800.0s)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,035 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 21:51:24] 2025-11-23 20:50:48,036 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 21:51:24] 2025-11-23 20:50:48,038 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6892522068/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,039 | INFO     | extracted standard info from prmon json
[2025-11-23 21:51:24] 2025-11-23 20:50:48,039 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 21:51:24] 2025-11-23 20:50:48,039 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 21:51:24] 2025-11-23 20:50:48,077 | INFO     | fitting pss+swap vs Time
[2025-11-23 21:51:24] 2025-11-23 20:50:48,079 | INFO     | sum of square deviations: 959083959735.9136
[2025-11-23 21:51:24] 2025-11-23 20:50:48,160 | INFO     | sum of deviations: 3295063194367.1523
[2025-11-23 21:51:24] 2025-11-23 20:50:48,161 | INFO     | mean x: 1763886532.271105
[2025-11-23 21:51:24] 2025-11-23 20:50:48,161 | INFO     | mean y: 2828111.255319149
[2025-11-23 21:51:24] 2025-11-23 20:50:48,161 | INFO     | intersect: -6057243619.19757
[2025-11-23 21:51:24] 2025-11-23 20:50:48,164 | INFO     | chi2: 25.008302173091373
[2025-11-23 21:51:24] 2025-11-23 20:50:48,166 | INFO     | sum of square deviations: 949244470322.807
[2025-11-23 21:51:24] 2025-11-23 20:50:48,236 | INFO     | sum of deviations: 3771633395510.0205
[2025-11-23 21:51:24] 2025-11-23 20:50:48,236 | INFO     | mean x: 1763886379.7754822
[2025-11-23 21:51:24] 2025-11-23 20:50:48,237 | INFO     | mean y: 2835495.8374655647
[2025-11-23 21:51:24] 2025-11-23 20:50:48,237 | INFO     | intersect: -7005614891.641855
[2025-11-23 21:51:24] 2025-11-23 20:50:48,238 | INFO     | chi2: 21.835482060798153
[2025-11-23 21:51:24] 2025-11-23 20:50:48,239 | INFO     | current chi2=21.835482060798153 (change=12.687067240042929 %)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,239 | INFO     | right removable region: 1451
[2025-11-23 21:51:24] 2025-11-23 20:50:48,241 | INFO     | sum of square deviations: 949243340602.806
[2025-11-23 21:51:24] 2025-11-23 20:50:48,254 | INFO     | monitor loop #6037: job 0:6892522068 is in state 'finished'
[2025-11-23 21:51:24] 2025-11-23 20:50:48,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,315 | INFO     | sum of deviations: 2691881312113.344
[2025-11-23 21:51:24] 2025-11-23 20:50:48,315 | INFO     | mean x: 1763886684.7754822
[2025-11-23 21:51:24] 2025-11-23 20:50:48,315 | INFO     | mean y: 2837458.267906336
[2025-11-23 21:51:24] 2025-11-23 20:50:48,315 | INFO     | intersect: -4999224078.890109
[2025-11-23 21:51:24] 2025-11-23 20:50:48,317 | INFO     | chi2: 20.361786358837232
[2025-11-23 21:51:24] 2025-11-23 20:50:48,317 | INFO     | current chi2=20.361786358837232 (change=18.579893117469346 %)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,317 | INFO     | left removable region: 10
[2025-11-23 21:51:24] 2025-11-23 20:50:48,320 | INFO     | sum of square deviations: 927832733973.775
[2025-11-23 21:51:24] 2025-11-23 20:50:48,391 | INFO     | sum of deviations: 2761930004260.97
[2025-11-23 21:51:24] 2025-11-23 20:50:48,392 | INFO     | mean x: 1763886654.2852187
[2025-11-23 21:51:24] 2025-11-23 20:50:48,392 | INFO     | mean y: 2854413.9611380985
[2025-11-23 21:51:24] 2025-11-23 20:50:48,392 | INFO     | intersect: -5247802623.887606
[2025-11-23 21:51:24] 2025-11-23 20:50:48,394 | INFO     | chi2: 13.303151509907417
[2025-11-23 21:51:24] 2025-11-23 20:50:48,394 | INFO     | current memory leak: 2.98 B/s (using 1441 data points, chi2=13.30)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,396 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,396 | INFO     | ..............................
[2025-11-23 21:51:24] 2025-11-23 20:50:48,396 | INFO     | . Timing measurements:
[2025-11-23 21:51:24] 2025-11-23 20:50:48,397 | INFO     | . get job = 0 s
[2025-11-23 21:51:24] 2025-11-23 20:50:48,397 | INFO     | . initial setup = 10 s
[2025-11-23 21:51:24] 2025-11-23 20:50:48,397 | INFO     | . payload setup = 149 s
[2025-11-23 21:51:24] 2025-11-23 20:50:48,397 | INFO     | . stage-in = 0 s
[2025-11-23 21:51:24] 2025-11-23 20:50:48,397 | INFO     | . payload execution = 88978 s
[2025-11-23 21:51:24] 2025-11-23 20:50:48,397 | INFO     | . stage-out = 5 s
[2025-11-23 21:51:24] 2025-11-23 20:50:48,397 | INFO     | . log creation = 2 s
[2025-11-23 21:51:24] 2025-11-23 20:50:48,397 | INFO     | ..............................
[2025-11-23 21:51:24] 2025-11-23 20:50:48,548 | INFO     | 
[2025-11-23 21:51:24] 2025-11-23 20:50:48,548 | INFO     | job summary report
[2025-11-23 21:51:24] 2025-11-23 20:50:48,548 | INFO     | --------------------------------------------------
[2025-11-23 21:51:24] 2025-11-23 20:50:48,548 | INFO     | PanDA job id: 6892522068
[2025-11-23 21:51:24] 2025-11-23 20:50:48,548 | INFO     | task id: 47493029
[2025-11-23 21:51:24] 2025-11-23 20:50:48,548 | INFO     | errors: (none)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,548 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | pilot state: finished 
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | transexitcode: 0
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | exeerrorcode: 0
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | exeerrordiag: 
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | exitcode: 0
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | exitmsg: OK
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | cpuconsumptiontime: 332018 s
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | nevents: 1000
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | neventsw: 0
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | pid: 19627
[2025-11-23 21:51:24] 2025-11-23 20:50:48,549 | INFO     | pgrp: 19627
[2025-11-23 21:51:24] 2025-11-23 20:50:48,554 | INFO     | corecount: 8
[2025-11-23 21:51:24] 2025-11-23 20:50:48,554 | INFO     | event service: False
[2025-11-23 21:51:24] 2025-11-23 20:50:48,554 | INFO     | sizes: {0: 2298565, 1: 2298649, 2: 2298848, 13: 2298848, 23: 2298904, 34: 2298932, 45: 2299088, 56: 2299116, 67: 2299144, 77: 2299172, 88: 2299228, 98: 2299798, 99
[2025-11-23 21:51:24] 2025-11-23 20:50:48,554 | INFO     | --------------------------------------------------
[2025-11-23 21:51:24] 2025-11-23 20:50:48,554 | INFO     | 
[2025-11-23 21:51:24] 2025-11-23 20:50:48,554 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-23 21:51:24] 2025-11-23 20:50:48,613 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,613 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,613 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,613 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,615 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,615 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,615 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,615 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,615 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 21:51:24] 2025-11-23 20:50:48,615 | INFO     | job 6892522068 has completed (purged errors)
[2025-11-23 21:51:24] 2025-11-23 20:50:48,615 | INFO     | overall cleanup function is called
[2025-11-23 21:51:24] 2025-11-23 20:50:49,635 | INFO     | --- collectZombieJob: --- 10, [19627]
[2025-11-23 21:51:24] 2025-11-23 20:50:49,635 | INFO     | zombie collector waiting for pid 19627
[2025-11-23 21:51:24] 2025-11-23 20:50:49,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 21:51:24] 2025-11-23 20:50:49,635 | INFO     | collected zombie processes
[2025-11-23 21:51:24] 2025-11-23 20:50:49,635 | INFO     | will attempt to kill all subprocesses of pid=19627
[2025-11-23 21:51:24] 2025-11-23 20:50:49,810 | INFO     | process IDs to be killed: [19627] (in reverse order)
[2025-11-23 21:51:24] 2025-11-23 20:50:50,062 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 21:51:24] 2025-11-23 20:50:50,063 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 21:51:24] 2025-11-23 20:50:50,066 | INFO     | did not find any defunct processes belonging to 19627
[2025-11-23 21:51:24] 2025-11-23 20:50:50,081 | INFO     | did not find any defunct processes belonging to 19627
[2025-11-23 21:51:24] 2025-11-23 20:50:50,126 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 21:51:24] 2025-11-23 20:50:50,126 | INFO     | ready for new job
[2025-11-23 21:51:24] 2025-11-23 20:50:50,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 21:51:24] 2025-11-23 20:50:50,133 | INFO     | ***************************************
[2025-11-23 21:51:24] 2025-11-23 20:50:50,133 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 21:51:24] 2025-11-23 20:50:50,133 | INFO     | ***************************************
[2025-11-23 21:51:24] 2025-11-23 20:50:50,133 | INFO     | 
[2025-11-23 21:51:24] 2025-11-23 20:50:50,134 | INFO     | pilot is running in a VM
[2025-11-23 21:51:24] 2025-11-23 20:50:50,134 | INFO     | architecture information:
[2025-11-23 21:51:24] 2025-11-23 20:50:50,138 | INFO     | executing command: cat /etc/os-release
[2025-11-23 21:51:24] 2025-11-23 20:50:50,324 | INFO     | cat /etc/os-release:
[2025-11-23 21:51:24] NAME="CentOS Linux"
[2025-11-23 21:51:24] VERSION="7 (Core)"
[2025-11-23 21:51:24] ID="centos"
[2025-11-23 21:51:24] ID_LIKE="rhel fedora"
[2025-11-23 21:51:24] VERSION_ID="7"
[2025-11-23 21:51:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 21:51:24] ANSI_COLOR="0;31"
[2025-11-23 21:51:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 21:51:24] HOME_URL="https://www.centos.org/"
[2025-11-23 21:51:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 21:51:24] 
[2025-11-23 21:51:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 21:51:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 21:51:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 21:51:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 21:51:24] 
[2025-11-23 21:51:24] 2025-11-23 20:50:50,324 | INFO     | ***************************************
[2025-11-23 21:51:24] 2025-11-23 20:50:50,830 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-23 21:51:24] 2025-11-23 20:50:50,947 | INFO     | sufficient remaining disk space (495199453184 B)
[2025-11-23 21:51:24] 2025-11-23 20:50:50,948 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 21:51:24] 2025-11-23 20:50:50,948 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 21:51:24] 2025-11-23 20:50:50,948 | INFO     | update_server=False
[2025-11-23 21:51:24] 2025-11-23 20:50:50,948 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:51:24] 2025-11-23 20:50:50,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:51:24] 2025-11-23 20:50:50,957 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:51:24] 2025-11-23 20:50:51,073 | INFO     | all data control threads have been joined
[2025-11-23 21:51:24] 2025-11-23 20:50:51,085 | INFO     | all payload control threads have been joined
[2025-11-23 21:51:24] 2025-11-23 20:50:51,186 | INFO     | all job control threads have been joined
[2025-11-23 21:51:24] 2025-11-23 20:50:51,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:51:24] 2025-11-23 20:50:51,764 | INFO     | aborting loop
[2025-11-23 21:51:24] 2025-11-23 20:50:51,960 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,008 | INFO     | [job] validate thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,078 | INFO     | [data] control thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,090 | INFO     | [payload] control thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,135 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,192 | INFO     | [job] control thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,545 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,563 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,770 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,771 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:52,967 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:53,303 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:53,381 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:53,568 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:51:24] 2025-11-23 20:50:54,574 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:54,966 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:50:57,861 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:51:24] 2025-11-23 20:51:01,721 | INFO     | job.realtimelogging is not enabled
[2025-11-23 21:51:24] 2025-11-23 20:51:02,727 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:51:24] 2025-11-23 20:51:04,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140049638532928)>', '<ExcThread(monitor, started 140049052055296)>']
[2025-11-23 21:51:24] 2025-11-23 20:51:09,192 | INFO     | all workflow threads have been joined
[2025-11-23 21:51:24] 2025-11-23 20:51:09,192 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:51:24] 2025-11-23 20:51:09,192 | INFO     | traces error code: 0
[2025-11-23 21:51:24] 2025-11-23 20:51:09,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:51:24] 2025-11-23 20:51:20,363 | INFO     | PID=12883 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 21:51:24] 2025-11-23 20:51:20,363 | INFO     | .. there are 9 such processes running
[2025-11-23 21:51:24] 2025-11-23 20:51:20,364 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:51:24] 2025-11-23 20:51:20,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:51:24] 2025-11-23 20:51:20,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:51:24] 2025-11-23 20:51:20,365 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:51:24] 2025-11-23 20:51:20,365 | INFO     | [monitor] control thread has ended
[2025-11-23 21:51:24] 2025-11-23 20:51:20,722 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:51:24] 2025-11-23 20:51:20,803 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:51:24] 2025-11-23 20:51:20,862 [wrapper] pilotpid: 12883
[2025-11-23 21:51:24] 2025-11-23 20:51:20,921 [wrapper] Pilot exit status: 0
[2025-11-23 21:51:24] 2025-11-23 20:51:21,301 [wrapper] pandaids: 6892522068
[2025-11-23 21:51:24] 2025-11-23 20:51:22,237 [wrapper] cleanup supervisor_pilot 22826 12884
[2025-11-23 21:51:24] 2025-11-23 20:51:22,342 [wrapper] Test setup, not cleaning
[2025-11-23 21:51:24] 2025-11-23 20:51:22,355 [wrapper] apfmon messages muted
[2025-11-23 21:51:24] 2025-11-23 20:51:22,389 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:51:24] 2025-11-23 20:51:22,488 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:51:24]  *** Error codes and diagnostics ***
[2025-11-23 21:51:24]     "exeErrorCode": 0,
[2025-11-23 21:51:24]     "exeErrorDiag": "",
[2025-11-23 21:51:24]     "pilotErrorCode": 0,
[2025-11-23 21:51:24]     "pilotErrorDiag": "",
[2025-11-23 21:51:24]  *** Listing of results directory ***
[2025-11-23 21:51:25] total 1313644
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:03 queuedata.json
[2025-11-23 21:51:25] -rwx------. 1 boinc boinc     36292 Nov 19 08:03 runpilot2-wrapper.sh
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc       100 Nov 22 20:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:51:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 20:56 run_atlas
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc       105 Nov 22 20:56 job.xml
[2025-11-23 21:51:25] -rw-r--r--. 2 boinc boinc 407250700 Nov 22 20:56 EVNT.47493027._000017.pool.root.1
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc      6391 Nov 22 20:56 init_data.xml
[2025-11-23 21:51:25] -rw-r--r--. 2 boinc boinc     15120 Nov 22 20:56 start_atlas.sh
[2025-11-23 21:51:25] drwxrwx--x. 2 boinc boinc        68 Nov 22 20:56 shared
[2025-11-23 21:51:25] -rw-r--r--. 2 boinc boinc    590096 Nov 22 20:56 input.tar.gz
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc         0 Nov 22 20:56 boinc_lockfile
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc      2771 Nov 22 20:56 pandaJob.out
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc    989768 Nov 22 21:00 agis_schedconf.cvmfs.json
[2025-11-23 21:51:25] drwx------. 5 boinc boinc      4096 Nov 22 21:00 pilot3
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc       533 Nov 23 21:24 boinc_task_state.xml
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc 905016320 Nov 23 21:47 HITS.47493029._000130.pool.root.1
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc      1031 Nov 23 21:49 memory_monitor_summary.json
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc   1526164 Nov 23 21:49 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc   2543724 Nov 23 21:49 log.47493029._000130.job.log.tgz.1
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc      7945 Nov 23 21:50 heartbeat.json
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc        95 Nov 23 21:51 pilot_heartbeat.json
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc       820 Nov 23 21:51 pilotlog.txt
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc  11955524 Nov 23 21:51 log.47493029._000130.job.log.1
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc       353 Nov 23 21:51 output.list
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc        29 Nov 23 21:51 wrapper_checkpoint.txt
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc       620 Nov 23 21:51 runtime_log
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc  14520320 Nov 23 21:51 result.tar.gz
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc      8192 Nov 23 21:51 boinc_mmap_file
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc       662 Nov 23 21:51 sfPNDmMPrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFaGKDmvkUN6n.diag
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc      8703 Nov 23 21:51 runtime_log.err
[2025-11-23 21:51:25] -rw-r--r--. 1 boinc boinc     21472 Nov 23 21:51 stderr.txt
[2025-11-23 21:51:25] HITS file was successfully produced:
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc 905016320 Nov 23 21:47 shared/HITS.pool.root.1
[2025-11-23 21:51:25]  *** Contents of shared directory: ***
[2025-11-23 21:51:25] total 1296292
[2025-11-23 21:51:25] -rw-r--r--. 2 boinc boinc 407250700 Nov 22 20:56 ATLAS.root_0
[2025-11-23 21:51:25] -rw-r--r--. 2 boinc boinc     15120 Nov 22 20:56 start_atlas.sh
[2025-11-23 21:51:25] -rw-r--r--. 2 boinc boinc    590096 Nov 22 20:56 input.tar.gz
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc 905016320 Nov 23 21:47 HITS.pool.root.1
[2025-11-23 21:51:25] -rw-------. 1 boinc boinc  14520320 Nov 23 21:51 result.tar.gz
21:51:26 (9032): run_atlas exited; CPU time 332423.037096
21:51:26 (9032): called boinc_finish(0)

</stderr_txt>
]]>

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