Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:01:13 (3528669): wrapper (7.7.26015): starting
19:01:13 (3528669): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 19:01:13] Arguments: --nthreads 3
[2025-11-19 19:01:13] Threads: 3
[2025-11-19 19:01:13] Checking for CVMFS
[2025-11-19 19:01:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:01:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:01:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:01:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:01:13] 2.9.2.0 4099368 1422 77696 153052 2 88 34325795 36864001 0 130560 0 10875017 99.986 186404 4313 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 19:01:13] CVMFS is ok
[2025-11-19 19:01:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 19:01:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 19:01:13] Further information can be found at the LHC@home message board.
[2025-11-19 19:01:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:01:13] Checking for apptainer binary...
[2025-11-19 19:01:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:01:13] Running /usr/bin/apptainer --version
[2025-11-19 19:01:13] apptainer version 1.4.1-1.1
[2025-11-19 19:01:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:01:13] thA335
[2025-11-19 19:01:13] apptainer works
[2025-11-19 19:01:13] Set ATHENA_PROC_NUMBER=3
[2025-11-19 19:01:13] Set ATHENA_CORE_NUMBER=3
[2025-11-19 19:01:14] Starting ATLAS job with PandaID=6892526569
[2025-11-19 19:01:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 19:05:32]  *** The last 200 lines of the pilot log: ***
[2025-11-19 19:05:32] 2025-11-19 18:04:40,432 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 19:05:32] 2025-11-19 18:04:40,432 | INFO     | update_server=False
[2025-11-19 19:05:32] 2025-11-19 18:04:40,432 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 19:05:32] 2025-11-19 18:04:40,432 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 19:05:32] 2025-11-19 18:04:40,433 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 19:05:32] 2025-11-19 18:04:40,694 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-19 19:05:32] 2025-11-19 18:04:40,694 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-19 19:05:32] 2025-11-19 18:04:40,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 19:05:32] 2025-11-19 18:04:40,696 | INFO     | will abort loop
[2025-11-19 19:05:32] 2025-11-19 18:04:40,955 | INFO     | all data control threads have been joined
[2025-11-19 19:05:32] 2025-11-19 18:04:41,280 | INFO     | all payload control threads have been joined
[2025-11-19 19:05:32] 2025-11-19 18:04:41,434 | INFO     | [job] retrieve thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:41,438 | INFO     | [job] queue monitor thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:41,702 | INFO     | [job] job monitor thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:41,851 | INFO     | all job control threads have been joined
[2025-11-19 19:05:32] 2025-11-19 18:04:41,886 | INFO     | [payload] validate_post thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:41,961 | INFO     | [data] control thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,245 | INFO     | [job] validate thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,286 | INFO     | [payload] control thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,323 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,388 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,388 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,437 | INFO     | [data] copytool_out thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,564 | INFO     | [data] copytool_in thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,857 | INFO     | [job] control thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:42,928 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 19:05:32] 2025-11-19 18:04:42,972 | INFO     | [payload] failed_post thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:04:46,936 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 19:05:32] 2025-11-19 18:05:10,501 | INFO     | PID=3532403 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 19:05:32] 2025-11-19 18:05:10,501 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 19:05:32] 2025-11-19 18:05:10,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 19:05:32] 2025-11-19 18:05:10,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 19:05:32] 2025-11-19 18:05:25,491 | INFO     | [monitor] cgroup control has ended
[2025-11-19 19:05:32] 2025-11-19 18:05:26,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139791647307584)>', '<ExcThread(monitor, started 139791135905536)>']
[2025-11-19 19:05:32] 2025-11-19 18:05:27,592 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 19:05:32] 2025-11-19 18:05:27,593 | INFO     | [monitor] control thread has ended
[2025-11-19 19:05:32] 2025-11-19 18:05:31,809 | INFO     | all workflow threads have been joined
[2025-11-19 19:05:32] 2025-11-19 18:05:31,810 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 19:05:32] 2025-11-19 18:05:31,810 | INFO     | traces error code: 0
[2025-11-19 19:05:32] 2025-11-19 18:05:31,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 19:05:32] 2025-11-19 18:05:31,858 [wrapper] ==== pilot stdout END ====
[2025-11-19 19:05:32] 2025-11-19 18:05:31,861 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 19:05:32] 2025-11-19 18:05:31,865 [wrapper] pilotpid: 3532403
[2025-11-19 19:05:32] 2025-11-19 18:05:31,867 [wrapper] Pilot exit status: 0
[2025-11-19 19:05:32] 2025-11-19 18:05:31,874 [wrapper] pandaids: 6892526569
[2025-11-19 19:05:32] 2025-11-19 18:05:31,890 [wrapper] cleanup supervisor_pilot 3532409 3532404
[2025-11-19 19:05:32] 2025-11-19 18:05:31,892 [wrapper] Test setup, not cleaning
[2025-11-19 19:05:32] 2025-11-19 18:05:31,895 [wrapper] apfmon messages muted
[2025-11-19 19:05:32] 2025-11-19 18:05:31,897 [wrapper] ==== wrapper stdout END ====
[2025-11-19 19:05:32] 2025-11-19 18:05:31,900 [wrapper] ==== wrapper stderr END ====
[2025-11-19 19:05:32]  *** Error codes and diagnostics ***
[2025-11-19 19:05:32]     "exeErrorCode": 65,
[2025-11-19 19:05:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 19:05:32]     "pilotErrorCode": 1305,
[2025-11-19 19:05:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 19:05:32]  *** Listing of results directory ***
[2025-11-19 19:05:32] total 406212
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-19 19:05:32] -rwx------ 1 boinc boinc     36292 Nov 19 08:10 runpilot2-wrapper.sh
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:10 queuedata.json
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc       100 Nov 19 19:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 19:05:32] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 19:01 run_atlas
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc       105 Nov 19 19:01 job.xml
[2025-11-19 19:05:32] -rw-r--r-- 2 boinc boinc 411767043 Nov 19 19:01 EVNT.47493027._000109.pool.root.1
[2025-11-19 19:05:32] -rw-r--r-- 2 boinc boinc    590095 Nov 19 19:01 input.tar.gz
[2025-11-19 19:05:32] -rw-r--r-- 2 boinc boinc     15120 Nov 19 19:01 start_atlas.sh
[2025-11-19 19:05:32] drwxrwx--x 2 boinc boinc      4096 Nov 19 19:01 shared
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc         0 Nov 19 19:01 boinc_setup_complete
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc      6194 Nov 19 19:01 init_data.xml
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc         0 Nov 19 19:01 boinc_lockfile
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc      2773 Nov 19 19:01 pandaJob.out
[2025-11-19 19:05:32] -rw------- 1 boinc boinc    989434 Nov 19 19:01 agis_schedconf.cvmfs.json
[2025-11-19 19:05:32] -rw------- 1 boinc boinc   1525063 Nov 19 19:01 agis_ddmendpoints.agis.ALL.json
[2025-11-19 19:05:32] drwx------ 5 boinc boinc      4096 Nov 19 19:01 pilot3
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc       523 Nov 19 19:02 boinc_task_state.xml
[2025-11-19 19:05:32] -rw------- 1 boinc boinc       951 Nov 19 19:02 memory_monitor_summary.json
[2025-11-19 19:05:32] -rw------- 1 boinc boinc     55736 Nov 19 19:02 log.47493029._001042.job.log.tgz.1
[2025-11-19 19:05:32] -rw------- 1 boinc boinc        95 Nov 19 19:04 pilot_heartbeat.json
[2025-11-19 19:05:32] -rw------- 1 boinc boinc      8413 Nov 19 19:04 heartbeat.json
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc      8192 Nov 19 19:05 boinc_mmap_file
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc        22 Nov 19 19:05 wrapper_checkpoint.txt
[2025-11-19 19:05:32] -rw------- 1 boinc boinc      4938 Nov 19 19:05 pilotlog.txt
[2025-11-19 19:05:32] -rw------- 1 boinc boinc     93616 Nov 19 19:05 log.47493029._001042.job.log.1
[2025-11-19 19:05:32] -rw------- 1 boinc boinc       186 Nov 19 19:05 output.list
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc       620 Nov 19 19:05 runtime_log
[2025-11-19 19:05:32] -rw------- 1 boinc boinc    163840 Nov 19 19:05 result.tar.gz
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc      8624 Nov 19 19:05 runtime_log.err
[2025-11-19 19:05:32] -rw------- 1 boinc boinc       649 Nov 19 19:05 2r7NDmQVrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyvFKDmPwsMIn.diag
[2025-11-19 19:05:32] -rw-r--r-- 1 boinc boinc      8125 Nov 19 19:05 stderr.txt
[2025-11-19 19:05:32] No HITS result produced
[2025-11-19 19:05:32]  *** Contents of shared directory: ***
[2025-11-19 19:05:32] total 402880
[2025-11-19 19:05:32] -rw-r--r-- 2 boinc boinc 411767043 Nov 19 19:01 ATLAS.root_0
[2025-11-19 19:05:32] -rw-r--r-- 2 boinc boinc    590095 Nov 19 19:01 input.tar.gz
[2025-11-19 19:05:32] -rw-r--r-- 2 boinc boinc     15120 Nov 19 19:01 start_atlas.sh
[2025-11-19 19:05:32] -rw------- 1 boinc boinc    163840 Nov 19 19:05 result.tar.gz
19:05:34 (3528669): run_atlas exited; CPU time 31.846529
19:05:34 (3528669): called boinc_finish(0)

</stderr_txt>
]]>

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