Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:14:34 (3055472): wrapper (7.7.26015): starting
17:14:34 (3055472): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 17:14:34] Arguments: --nthreads 12
[2025-11-20 17:14:34] Threads: 12
[2025-11-20 17:14:34] Checking for CVMFS
[2025-11-20 17:14:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:14:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:14:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:14:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:14:35] 2.13.3.0 9008 18843 410048 153086 0 98 42551576 46080001 7751 130560 0 124916451 99.870 50132451 27427 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-20 17:14:35] CVMFS is ok
[2025-11-20 17:14:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:14:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:14:35] Further information can be found at the LHC@home message board.
[2025-11-20 17:14:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:14:35] Checking for apptainer binary...
[2025-11-20 17:14:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:14:35] Running /usr/bin/apptainer --version
[2025-11-20 17:14:35] apptainer version 1.4.3-1.el9
[2025-11-20 17:14:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:14:35] mff2103.farm.particle.cz
[2025-11-20 17:14:35] apptainer works
[2025-11-20 17:14:35] Set ATHENA_PROC_NUMBER=12
[2025-11-20 17:14:35] Set ATHENA_CORE_NUMBER=12
[2025-11-20 17:14:35] Starting ATLAS job with PandaID=6892537936
[2025-11-20 17:14:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:47:38]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:47:38] 2025-11-20 21:47:05,048 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 22:47:38] 2025-11-20 21:47:05,064 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2746.378958333334
[2025-11-20 22:47:38] 2025-11-20 21:47:05,082 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6892537936/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,083 | INFO     | extracted standard info from prmon json
[2025-11-20 22:47:38] 2025-11-20 21:47:05,083 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 22:47:38] 2025-11-20 21:47:05,083 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 22:47:38] 2025-11-20 21:47:05,089 | INFO     | fitting pss+swap vs Time
[2025-11-20 22:47:38] 2025-11-20 21:47:05,090 | INFO     | sum of square deviations: 10842194922.996933
[2025-11-20 22:47:38] 2025-11-20 21:47:05,092 | INFO     | sum of deviations: 112371926574.27826
[2025-11-20 22:47:38] 2025-11-20 21:47:05,093 | INFO     | mean x: 1763665263.0030582
[2025-11-20 22:47:38] 2025-11-20 21:47:05,093 | INFO     | mean y: 3487175.721712538
[2025-11-20 22:47:38] 2025-11-20 21:47:05,093 | INFO     | intersect: -18275695669.019405
[2025-11-20 22:47:38] 2025-11-20 21:47:05,093 | INFO     | chi2: 6.153890910935732
[2025-11-20 22:47:38] 2025-11-20 21:47:05,094 | INFO     | sum of square deviations: 10352509030.388187
[2025-11-20 22:47:38] 2025-11-20 21:47:05,097 | INFO     | sum of deviations: 245684899164.07156
[2025-11-20 22:47:38] 2025-11-20 21:47:05,097 | INFO     | mean x: 1763665110.5186336
[2025-11-20 22:47:38] 2025-11-20 21:47:05,097 | INFO     | mean y: 3528631.0714285714
[2025-11-20 22:47:38] 2025-11-20 21:47:05,097 | INFO     | intersect: -41851627791.88453
[2025-11-20 22:47:38] 2025-11-20 21:47:05,097 | INFO     | chi2: 2.8879726504564003
[2025-11-20 22:47:38] 2025-11-20 21:47:05,098 | INFO     | current chi2=2.8879726504564003 (change=53.07078574752849 %)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,098 | INFO     | sum of square deviations: 9877761246.744478
[2025-11-20 22:47:38] 2025-11-20 21:47:05,101 | INFO     | sum of deviations: 295513764546.77625
[2025-11-20 22:47:38] 2025-11-20 21:47:05,101 | INFO     | mean x: 1763664958.0283911
[2025-11-20 22:47:38] 2025-11-20 21:47:05,101 | INFO     | mean y: 3544546.58044164
[2025-11-20 22:47:38] 2025-11-20 21:47:05,101 | INFO     | intersect: -52760159508.11873
[2025-11-20 22:47:38] 2025-11-20 21:47:05,102 | INFO     | chi2: 2.1702633890715677
[2025-11-20 22:47:38] 2025-11-20 21:47:05,102 | INFO     | current chi2=2.1702633890715677 (change=24.85166406514998 %)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,102 | INFO     | right removable region: 316
[2025-11-20 22:47:38] 2025-11-20 21:47:05,102 | INFO     | sum of square deviations: 10352348480.450354
[2025-11-20 22:47:38] 2025-11-20 21:47:05,106 | INFO     | sum of deviations: 13469778138.773277
[2025-11-20 22:47:38] 2025-11-20 21:47:05,106 | INFO     | mean x: 1763665415.5124223
[2025-11-20 22:47:38] 2025-11-20 21:47:05,106 | INFO     | mean y: 3517825.4316770188
[2025-11-20 22:47:38] 2025-11-20 21:47:05,106 | INFO     | intersect: -2291244749.7310033
[2025-11-20 22:47:38] 2025-11-20 21:47:05,107 | INFO     | chi2: 4.128910874826089
[2025-11-20 22:47:38] 2025-11-20 21:47:05,107 | INFO     | current chi2=4.128910874826089 (change=32.9056862628352 %)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,107 | INFO     | sum of square deviations: 9877538357.949482
[2025-11-20 22:47:38] 2025-11-20 21:47:05,110 | INFO     | sum of deviations: -9539062574.73827
[2025-11-20 22:47:38] 2025-11-20 21:47:05,110 | INFO     | mean x: 1763665568.0126183
[2025-11-20 22:47:38] 2025-11-20 21:47:05,110 | INFO     | mean y: 3525199.6845425866
[2025-11-20 22:47:38] 2025-11-20 21:47:05,110 | INFO     | intersect: 1706754851.0929716
[2025-11-20 22:47:38] 2025-11-20 21:47:05,111 | INFO     | chi2: 4.063237712665122
[2025-11-20 22:47:38] 2025-11-20 21:47:05,111 | INFO     | current chi2=4.063237712665122 (change=1.590568654832827 %)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,111 | INFO     | left removable region: 20
[2025-11-20 22:47:38] 2025-11-20 21:47:05,112 | INFO     | sum of square deviations: 8041793125.513503
[2025-11-20 22:47:38] 2025-11-20 21:47:05,114 | INFO     | sum of deviations: 144063613645.75677
[2025-11-20 22:47:38] 2025-11-20 21:47:05,114 | INFO     | mean x: 1763665537.5405405
[2025-11-20 22:47:38] 2025-11-20 21:47:05,114 | INFO     | mean y: 3594717.3952702703
[2025-11-20 22:47:38] 2025-11-20 21:47:05,114 | INFO     | intersect: -31591352657.522713
[2025-11-20 22:47:38] 2025-11-20 21:47:05,115 | INFO     | chi2: 0.012599654097321536
[2025-11-20 22:47:38] 2025-11-20 21:47:05,115 | INFO     | current memory leak: 17.91 B/s (using 296 data points, chi2=0.01)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,115 | INFO     | could have reported an average CPU frequency of 2721 MHz (14 samples)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | ..............................
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | . Timing measurements:
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | . get job = 0 s
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | . initial setup = 1 s
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | . payload setup = 7 s
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | . stage-in = 0 s
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | . payload execution = 19894 s
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | . stage-out = 2 s
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | . log creation = 0 s
[2025-11-20 22:47:38] 2025-11-20 21:47:05,116 | INFO     | ..............................
[2025-11-20 22:47:38] 2025-11-20 21:47:05,409 | INFO     | 
[2025-11-20 22:47:38] 2025-11-20 21:47:05,410 | INFO     | job summary report
[2025-11-20 22:47:38] 2025-11-20 21:47:05,410 | INFO     | --------------------------------------------------
[2025-11-20 22:47:38] 2025-11-20 21:47:05,410 | INFO     | PanDA job id: 6892537936
[2025-11-20 22:47:38] 2025-11-20 21:47:05,410 | INFO     | task id: 47493029
[2025-11-20 22:47:38] 2025-11-20 21:47:05,410 | INFO     | errors: (none)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,410 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 22:47:38] 2025-11-20 21:47:05,410 | INFO     | pilot state: finished 
[2025-11-20 22:47:38] 2025-11-20 21:47:05,410 | INFO     | transexitcode: 0
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | exeerrorcode: 0
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | exeerrordiag: 
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | exitcode: 0
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | exitmsg: OK
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | cpuconsumptiontime: 221735 s
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | nevents: 1000
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | neventsw: 0
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | pid: 3067746
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | pgrp: 3067746
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | corecount: 12
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | event service: False
[2025-11-20 22:47:38] 2025-11-20 21:47:05,411 | INFO     | sizes: {0: 2298626, 1: 2298825, 6: 2299087, 11: 2299115, 19905: 2333674, 19906: 2333673, 19910: 2342853, 19912: 2342909, 19920: 2343155}
[2025-11-20 22:47:38] 2025-11-20 21:47:05,412 | INFO     | --------------------------------------------------
[2025-11-20 22:47:38] 2025-11-20 21:47:05,412 | INFO     | 
[2025-11-20 22:47:38] 2025-11-20 21:47:05,412 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-11-20 22:47:38] 2025-11-20 21:47:05,439 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,440 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,440 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,440 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,440 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,440 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,441 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,441 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,441 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,441 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,441 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,441 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,441 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,441 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,442 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,442 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,442 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,442 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 22:47:38] 2025-11-20 21:47:05,443 | INFO     | job 6892537936 has completed (purged errors)
[2025-11-20 22:47:38] 2025-11-20 21:47:05,443 | INFO     | overall cleanup function is called
[2025-11-20 22:47:38] 2025-11-20 21:47:06,474 | INFO     | --- collectZombieJob: --- 10, [3067746]
[2025-11-20 22:47:38] 2025-11-20 21:47:06,474 | INFO     | zombie collector waiting for pid 3067746
[2025-11-20 22:47:38] 2025-11-20 21:47:06,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 22:47:38] 2025-11-20 21:47:06,474 | INFO     | collected zombie processes
[2025-11-20 22:47:38] 2025-11-20 21:47:06,475 | INFO     | will attempt to kill all subprocesses of pid=3067746
[2025-11-20 22:47:38] 2025-11-20 21:47:06,879 | INFO     | process IDs to be killed: [3067746] (in reverse order)
[2025-11-20 22:47:38] 2025-11-20 21:47:07,016 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 22:47:38] 2025-11-20 21:47:07,016 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 22:47:38] 2025-11-20 21:47:07,030 | INFO     | did not find any defunct processes belonging to 3067746
[2025-11-20 22:47:38] 2025-11-20 21:47:07,044 | INFO     | did not find any defunct processes belonging to 3067746
[2025-11-20 22:47:38] 2025-11-20 21:47:07,045 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 22:47:38] 2025-11-20 21:47:07,045 | INFO     | ready for new job
[2025-11-20 22:47:38] 2025-11-20 21:47:07,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 22:47:38] 2025-11-20 21:47:07,048 | INFO     | ***************************************
[2025-11-20 22:47:38] 2025-11-20 21:47:07,049 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 22:47:38] 2025-11-20 21:47:07,049 | INFO     | ***************************************
[2025-11-20 22:47:38] 2025-11-20 21:47:07,049 | INFO     | 
[2025-11-20 22:47:38] 2025-11-20 21:47:07,055 | INFO     | architecture information:
[2025-11-20 22:47:38] 2025-11-20 21:47:07,056 | INFO     | executing command: cat /etc/os-release
[2025-11-20 22:47:38] 2025-11-20 21:47:07,078 | INFO     | cat /etc/os-release:
[2025-11-20 22:47:38] NAME="CentOS Linux"
[2025-11-20 22:47:38] VERSION="7 (Core)"
[2025-11-20 22:47:38] ID="centos"
[2025-11-20 22:47:38] ID_LIKE="rhel fedora"
[2025-11-20 22:47:38] VERSION_ID="7"
[2025-11-20 22:47:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:47:38] ANSI_COLOR="0;31"
[2025-11-20 22:47:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:47:38] HOME_URL="https://www.centos.org/"
[2025-11-20 22:47:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:47:38] 
[2025-11-20 22:47:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:47:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:47:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:47:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:47:38] 
[2025-11-20 22:47:38] 2025-11-20 21:47:07,079 | INFO     | ***************************************
[2025-11-20 22:47:38] 2025-11-20 21:47:07,581 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-11-20 22:47:38] 2025-11-20 21:47:07,605 | INFO     | sufficient remaining disk space (1669241765888 B)
[2025-11-20 22:47:38] 2025-11-20 21:47:07,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:47:38] 2025-11-20 21:47:07,606 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:47:38] 2025-11-20 21:47:07,606 | INFO     | update_server=False
[2025-11-20 22:47:38] 2025-11-20 21:47:07,606 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:47:38] 2025-11-20 21:47:07,713 | INFO     | all payload control threads have been joined
[2025-11-20 22:47:38] 2025-11-20 21:47:07,873 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 22:47:38] 2025-11-20 21:47:07,887 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 22:47:38] 2025-11-20 21:47:07,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:47:38] 2025-11-20 21:47:07,887 | INFO     | will abort loop
[2025-11-20 22:47:38] 2025-11-20 21:47:08,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:47:38] 2025-11-20 21:47:08,475 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:47:38] 2025-11-20 21:47:08,488 | INFO     | all data control threads have been joined
[2025-11-20 22:47:38] 2025-11-20 21:47:08,522 | INFO     | all job control threads have been joined
[2025-11-20 22:47:38] 2025-11-20 21:47:08,609 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:08,653 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:08,719 | INFO     | [payload] control thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:08,893 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:08,906 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:09,072 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:09,234 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:09,494 | INFO     | [data] control thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:09,527 | INFO     | [job] control thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:09,716 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:09,736 | INFO     | [job] validate thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:10,043 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:10,100 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:10,224 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:10,225 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:47:38] 2025-11-20 21:47:11,230 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:12,484 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:47:38] 2025-11-20 21:47:21,464 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:47:38] 2025-11-20 21:47:23,242 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140695322179392)>', '<ExcThread(monitor, started 140694958085888)>']
[2025-11-20 22:47:38] 2025-11-20 21:47:28,261 | INFO     | all workflow threads have been joined
[2025-11-20 22:47:38] 2025-11-20 21:47:28,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:47:38] 2025-11-20 21:47:28,261 | INFO     | traces error code: 0
[2025-11-20 22:47:38] 2025-11-20 21:47:28,262 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:47:38] 2025-11-20 21:47:38,410 | INFO     | PID=3060428 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 22:47:38] 2025-11-20 21:47:38,411 | INFO     | .. there are 10 such processes running
[2025-11-20 22:47:38] 2025-11-20 21:47:38,411 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:47:38] 2025-11-20 21:47:38,411 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:47:38] 2025-11-20 21:47:38,411 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:47:38] 2025-11-20 21:47:38,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:47:38] 2025-11-20 21:47:38,412 | CRITICAL | thread 'MainThread' is not alive
[2025-11-20 22:47:38] 2025-11-20 21:47:38,412 | INFO     | [monitor] control thread has ended
[2025-11-20 22:47:38] 2025-11-20 21:47:38,543 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:47:38] 2025-11-20 21:47:38,547 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:47:38] 2025-11-20 21:47:38,551 [wrapper] pilotpid: 3060428
[2025-11-20 22:47:38] 2025-11-20 21:47:38,555 [wrapper] Pilot exit status: 0
[2025-11-20 22:47:38] 2025-11-20 21:47:38,569 [wrapper] pandaids: 6892537936
[2025-11-20 22:47:38] 2025-11-20 21:47:38,657 [wrapper] cleanup supervisor_pilot 3554851 3060429
[2025-11-20 22:47:38] 2025-11-20 21:47:38,662 [wrapper] Test setup, not cleaning
[2025-11-20 22:47:38] 2025-11-20 21:47:38,666 [wrapper] apfmon messages muted
[2025-11-20 22:47:38] 2025-11-20 21:47:38,670 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:47:38] 2025-11-20 21:47:38,673 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:47:38]  *** Error codes and diagnostics ***
[2025-11-20 22:47:38]     "exeErrorCode": 0,
[2025-11-20 22:47:38]     "exeErrorDiag": "",
[2025-11-20 22:47:38]     "pilotErrorCode": 0,
[2025-11-20 22:47:38]     "pilotErrorDiag": "",
[2025-11-20 22:47:38]  *** Listing of results directory ***
[2025-11-20 22:47:38] total 1292452
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:27 pilot3.tar.gz
[2025-11-20 22:47:38] -rwx------ 1 boinc boinc     36292 Nov 19 08:31 runpilot2-wrapper.sh
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:31 queuedata.json
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc       100 Nov 20 17:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:47:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 17:14 run_atlas
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc       105 Nov 20 17:14 job.xml
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc      6665 Nov 20 17:14 init_data.xml
[2025-11-20 22:47:38] -rw-r--r-- 2 boinc boinc 409366460 Nov 20 17:14 EVNT.47493027._000224.pool.root.1
[2025-11-20 22:47:38] -rw-r--r-- 2 boinc boinc     15120 Nov 20 17:14 start_atlas.sh
[2025-11-20 22:47:38] drwxrwx--x 2 boinc boinc      4096 Nov 20 17:14 shared
[2025-11-20 22:47:38] -rw-r--r-- 2 boinc boinc    590096 Nov 20 17:14 input.tar.gz
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc         0 Nov 20 17:14 boinc_lockfile
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc      2773 Nov 20 17:14 pandaJob.out
[2025-11-20 22:47:38] -rw------- 1 boinc boinc    989440 Nov 20 17:14 agis_schedconf.cvmfs.json
[2025-11-20 22:47:38] drwx------ 5 boinc boinc      4096 Nov 20 17:14 pilot3
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc       533 Nov 20 22:37 boinc_task_state.xml
[2025-11-20 22:47:38] -rw------- 1 boinc boinc 900460146 Nov 20 22:46 HITS.47493029._002199.pool.root.1
[2025-11-20 22:47:38] -rw------- 1 boinc boinc      1034 Nov 20 22:46 memory_monitor_summary.json
[2025-11-20 22:47:38] -rw------- 1 boinc boinc   1526164 Nov 20 22:46 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:47:38] -rw------- 1 boinc boinc   2088874 Nov 20 22:46 log.47493029._002199.job.log.tgz.1
[2025-11-20 22:47:38] -rw------- 1 boinc boinc      8596 Nov 20 22:47 heartbeat.json
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc      8192 Nov 20 22:47 boinc_mmap_file
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc        29 Nov 20 22:47 wrapper_checkpoint.txt
[2025-11-20 22:47:38] -rw------- 1 boinc boinc        95 Nov 20 22:47 pilot_heartbeat.json
[2025-11-20 22:47:38] -rw------- 1 boinc boinc       893 Nov 20 22:47 pilotlog.txt
[2025-11-20 22:47:38] -rw------- 1 boinc boinc   2773274 Nov 20 22:47 log.47493029._002199.job.log.1
[2025-11-20 22:47:38] -rw------- 1 boinc boinc       353 Nov 20 22:47 output.list
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc       620 Nov 20 22:47 runtime_log
[2025-11-20 22:47:38] -rw------- 1 boinc boinc   4884480 Nov 20 22:47 result.tar.gz
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc      8765 Nov 20 22:47 runtime_log.err
[2025-11-20 22:47:38] -rw------- 1 boinc boinc       670 Nov 20 22:47 m8FLDmAqrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmtGKDm04nfbm.diag
[2025-11-20 22:47:38] -rw-r--r-- 1 boinc boinc     21324 Nov 20 22:47 stderr.txt
[2025-11-20 22:47:38] HITS file was successfully produced:
[2025-11-20 22:47:38] -rw------- 1 boinc boinc 900460146 Nov 20 22:46 shared/HITS.pool.root.1
[2025-11-20 22:47:38]  *** Contents of shared directory: ***
[2025-11-20 22:47:38] total 1284504
[2025-11-20 22:47:38] -rw-r--r-- 2 boinc boinc 409366460 Nov 20 17:14 ATLAS.root_0
[2025-11-20 22:47:38] -rw-r--r-- 2 boinc boinc     15120 Nov 20 17:14 start_atlas.sh
[2025-11-20 22:47:38] -rw-r--r-- 2 boinc boinc    590096 Nov 20 17:14 input.tar.gz
[2025-11-20 22:47:38] -rw------- 1 boinc boinc 900460146 Nov 20 22:46 HITS.pool.root.1
[2025-11-20 22:47:38] -rw------- 1 boinc boinc   4884480 Nov 20 22:47 result.tar.gz
22:47:40 (3055472): run_atlas exited; CPU time 221796.620020
22:47:40 (3055472): called boinc_finish(0)

</stderr_txt>
]]>

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