Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:28 (1116854): wrapper (7.7.26015): starting
00:03:28 (1116854): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 00:03:28] Arguments: --nthreads 12
[2025-11-20 00:03:28] Threads: 12
[2025-11-20 00:03:28] Checking for CVMFS
[2025-11-20 00:03:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 00:03:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 00:03:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 00:03:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 00:03:32] 2.13.2.0 5670 23822 113448 153069 3 64 34654537 40960000 10834 16776704 0 15475473 99.706 9306560 29085 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 00:03:32] CVMFS is ok
[2025-11-20 00:03:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 00:03:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 00:03:32] Further information can be found at the LHC@home message board.
[2025-11-20 00:03:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 00:03:32] Checking for apptainer binary...
[2025-11-20 00:03:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 00:03:32] Running /usr/bin/apptainer --version
[2025-11-20 00:03:35] apptainer version 1.4.4-1.el9
[2025-11-20 00:03:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 00:03:37] c-211-8.aglt2.org
[2025-11-20 00:03:37] apptainer works
[2025-11-20 00:03:38] Set ATHENA_PROC_NUMBER=12
[2025-11-20 00:03:38] Set ATHENA_CORE_NUMBER=12
[2025-11-20 00:03:38] Starting ATLAS job with PandaID=6892522900
[2025-11-20 00:03:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:47:04]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:47:04] 2025-11-21 04:46:18,973 | INFO     | time since job start (85257s) is within the limit (172800.0s)
[2025-11-20 23:47:04] 2025-11-21 04:46:18,973 | INFO     | 85269s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 23:47:04] 2025-11-21 04:46:19,326 | INFO     | monitor loop #5280: job 0:6892522900 is in state 'finished'
[2025-11-20 23:47:04] 2025-11-21 04:46:19,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:04] 2025-11-21 04:46:20,980 | INFO     | time since job start (85259s) is within the limit (172800.0s)
[2025-11-20 23:47:04] 2025-11-21 04:46:21,832 | INFO     | monitor loop #5281: job 0:6892522900 is in state 'finished'
[2025-11-20 23:47:04] 2025-11-21 04:46:21,833 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:04] 2025-11-21 04:46:23,216 | INFO     | time since job start (85262s) is within the limit (172800.0s)
[2025-11-20 23:47:04] 2025-11-21 04:46:24,342 | INFO     | monitor loop #5282: job 0:6892522900 is in state 'finished'
[2025-11-20 23:47:04] 2025-11-21 04:46:24,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:04] 2025-11-21 04:46:25,223 | INFO     | time since job start (85264s) is within the limit (172800.0s)
[2025-11-20 23:47:04] 2025-11-21 04:46:26,847 | INFO     | monitor loop #5283: job 0:6892522900 is in state 'finished'
[2025-11-20 23:47:04] 2025-11-21 04:46:26,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:04] 2025-11-21 04:46:27,232 | INFO     | time since job start (85266s) is within the limit (172800.0s)
[2025-11-20 23:47:04] 2025-11-21 04:46:29,239 | INFO     | time since job start (85268s) is within the limit (172800.0s)
[2025-11-20 23:47:04] 2025-11-21 04:46:29,352 | INFO     | monitor loop #5284: job 0:6892522900 is in state 'finished'
[2025-11-20 23:47:04] 2025-11-21 04:46:29,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:04] 2025-11-21 04:46:29,733 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 23:47:04] 2025-11-21 04:46:29,750 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2619.2081041666665
[2025-11-20 23:47:04] 2025-11-21 04:46:29,768 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892522900/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:47:04] 2025-11-21 04:46:29,779 | INFO     | extracted standard info from prmon json
[2025-11-20 23:47:04] 2025-11-21 04:46:29,779 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:47:04] 2025-11-21 04:46:29,779 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:47:04] 2025-11-21 04:46:29,873 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:47:04] 2025-11-21 04:46:29,875 | INFO     | sum of square deviations: 841781264214.4495
[2025-11-20 23:47:04] 2025-11-21 04:46:29,999 | INFO     | sum of deviations: 11302391645555.521
[2025-11-20 23:47:04] 2025-11-21 04:46:29,999 | INFO     | mean x: 1763657827.5146954
[2025-11-20 23:47:04] 2025-11-21 04:46:30,000 | INFO     | mean y: 3350853.511827957
[2025-11-20 23:47:04] 2025-11-21 04:46:30,000 | INFO     | intersect: -23676852475.701836
[2025-11-20 23:47:04] 2025-11-21 04:46:30,001 | INFO     | chi2: 27.682244789085903
[2025-11-20 23:47:04] 2025-11-21 04:46:30,003 | INFO     | sum of square deviations: 832764566904.3422
[2025-11-20 23:47:04] 2025-11-21 04:46:30,113 | INFO     | sum of deviations: 11886430877047.742
[2025-11-20 23:47:04] 2025-11-21 04:46:30,114 | INFO     | mean x: 1763657675.0345323
[2025-11-20 23:47:04] 2025-11-21 04:46:30,114 | INFO     | mean y: 3360730.3179856115
[2025-11-20 23:47:04] 2025-11-21 04:46:30,114 | INFO     | intersect: -25170134730.711567
[2025-11-20 23:47:04] 2025-11-21 04:46:30,120 | INFO     | chi2: 24.099899199061035
[2025-11-20 23:47:04] 2025-11-21 04:46:30,120 | INFO     | current chi2=24.099899199061035 (change=12.940950480422222 %)
[2025-11-20 23:47:04] 2025-11-21 04:46:30,120 | INFO     | right removable region: 1389
[2025-11-20 23:47:04] 2025-11-21 04:46:30,123 | INFO     | sum of square deviations: 832759874174.3427
[2025-11-20 23:47:04] 2025-11-21 04:46:30,240 | INFO     | sum of deviations: 10647974116816.74
[2025-11-20 23:47:04] 2025-11-21 04:46:30,240 | INFO     | mean x: 1763657980.0345323
[2025-11-20 23:47:04] 2025-11-21 04:46:30,241 | INFO     | mean y: 3361916.026618705
[2025-11-20 23:47:04] 2025-11-21 04:46:30,241 | INFO     | intersect: -22547417852.203945
[2025-11-20 23:47:04] 2025-11-21 04:46:30,247 | INFO     | chi2: 23.333058288187203
[2025-11-20 23:47:04] 2025-11-21 04:46:30,247 | INFO     | current chi2=23.333058288187203 (change=15.711104840072165 %)
[2025-11-20 23:47:04] 2025-11-21 04:46:30,247 | INFO     | left removable region: 10
[2025-11-20 23:47:04] 2025-11-21 04:46:30,249 | INFO     | sum of square deviations: 813145696270.2128
[2025-11-20 23:47:04] 2025-11-21 04:46:30,352 | INFO     | sum of deviations: 10712072408367.584
[2025-11-20 23:47:04] 2025-11-21 04:46:30,352 | INFO     | mean x: 1763657949.5786803
[2025-11-20 23:47:04] 2025-11-21 04:46:30,352 | INFO     | mean y: 3384653.1421319796
[2025-11-20 23:47:04] 2025-11-21 04:46:30,353 | INFO     | intersect: -23230374986.903812
[2025-11-20 23:47:04] 2025-11-21 04:46:30,354 | INFO     | chi2: 15.049466721874559
[2025-11-20 23:47:04] 2025-11-21 04:46:30,355 | INFO     | current memory leak: 13.17 B/s (using 1379 data points, chi2=15.05)
[2025-11-20 23:47:04] 2025-11-21 04:46:30,356 | INFO     | could have reported an average CPU frequency of 2524 MHz (50 samples)
[2025-11-20 23:47:04] 2025-11-21 04:46:30,357 | INFO     | ..............................
[2025-11-20 23:47:04] 2025-11-21 04:46:30,357 | INFO     | . Timing measurements:
[2025-11-20 23:47:04] 2025-11-21 04:46:30,357 | INFO     | . get job = 1 s
[2025-11-20 23:47:04] 2025-11-21 04:46:30,357 | INFO     | . initial setup = 10 s
[2025-11-20 23:47:04] 2025-11-21 04:46:30,357 | INFO     | . payload setup = 55 s
[2025-11-20 23:47:04] 2025-11-21 04:46:30,357 | INFO     | . stage-in = 1 s
[2025-11-20 23:47:04] 2025-11-21 04:46:30,357 | INFO     | . payload execution = 85092 s
[2025-11-20 23:47:04] 2025-11-21 04:46:30,357 | INFO     | . stage-out = 4 s
[2025-11-20 23:47:04] 2025-11-21 04:46:30,357 | INFO     | . log creation = 1 s
[2025-11-20 23:47:04] 2025-11-21 04:46:30,358 | INFO     | ..............................
[2025-11-20 23:47:04] 2025-11-21 04:46:30,556 | INFO     | 
[2025-11-20 23:47:04] 2025-11-21 04:46:30,558 | INFO     | job summary report
[2025-11-20 23:47:04] 2025-11-21 04:46:30,558 | INFO     | --------------------------------------------------
[2025-11-20 23:47:04] 2025-11-21 04:46:30,559 | INFO     | PanDA job id: 6892522900
[2025-11-20 23:47:04] 2025-11-21 04:46:30,559 | INFO     | task id: 47493029
[2025-11-20 23:47:04] 2025-11-21 04:46:30,559 | INFO     | errors: (none)
[2025-11-20 23:47:04] 2025-11-21 04:46:30,559 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:47:04] 2025-11-21 04:46:30,559 | INFO     | pilot state: finished 
[2025-11-20 23:47:04] 2025-11-21 04:46:30,559 | INFO     | transexitcode: 0
[2025-11-20 23:47:04] 2025-11-21 04:46:30,559 | INFO     | exeerrorcode: 0
[2025-11-20 23:47:04] 2025-11-21 04:46:30,559 | INFO     | exeerrordiag: 
[2025-11-20 23:47:04] 2025-11-21 04:46:30,560 | INFO     | exitcode: 0
[2025-11-20 23:47:04] 2025-11-21 04:46:30,560 | INFO     | exitmsg: OK
[2025-11-20 23:47:04] 2025-11-21 04:46:30,560 | INFO     | cpuconsumptiontime: 344532 s
[2025-11-20 23:47:04] 2025-11-21 04:46:30,560 | INFO     | nevents: 1000
[2025-11-20 23:47:04] 2025-11-21 04:46:30,560 | INFO     | neventsw: 0
[2025-11-20 23:47:04] 2025-11-21 04:46:30,560 | INFO     | pid: 1129952
[2025-11-20 23:47:04] 2025-11-21 04:46:30,560 | INFO     | pgrp: 1129952
[2025-11-20 23:47:04] 2025-11-21 04:46:30,560 | INFO     | corecount: 12
[2025-11-20 23:47:04] 2025-11-21 04:46:30,561 | INFO     | event service: False
[2025-11-20 23:47:04] 2025-11-21 04:46:30,561 | INFO     | sizes: {0: 2296368, 1: 2296969, 2: 2297053, 3: 2297280, 5: 2297336, 17: 2297336, 29: 2297492, 40: 2297520, 43: 2297810, 51: 2297838, 85151: 2362580, 85157: 2373170
[2025-11-20 23:47:04] 2025-11-21 04:46:30,561 | INFO     | --------------------------------------------------
[2025-11-20 23:47:04] 2025-11-21 04:46:30,561 | INFO     | 
[2025-11-20 23:47:04] 2025-11-21 04:46:30,561 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 23:47:04] 2025-11-21 04:46:30,633 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,633 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,633 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,633 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,634 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,634 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,635 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,635 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,635 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,635 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,635 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:47:04] 2025-11-21 04:46:30,635 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,636 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:47:04] 2025-11-21 04:46:30,649 | INFO     | job 6892522900 has completed (purged errors)
[2025-11-20 23:47:04] 2025-11-21 04:46:30,649 | INFO     | overall cleanup function is called
[2025-11-20 23:47:04] 2025-11-21 04:46:31,698 | INFO     | --- collectZombieJob: --- 10, [1129952]
[2025-11-20 23:47:04] 2025-11-21 04:46:31,698 | INFO     | zombie collector waiting for pid 1129952
[2025-11-20 23:47:04] 2025-11-21 04:46:31,699 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:47:04] 2025-11-21 04:46:31,699 | INFO     | collected zombie processes
[2025-11-20 23:47:04] 2025-11-21 04:46:31,699 | INFO     | will attempt to kill all subprocesses of pid=1129952
[2025-11-20 23:47:04] 2025-11-21 04:46:32,407 | INFO     | process IDs to be killed: [1129952] (in reverse order)
[2025-11-20 23:47:04] 2025-11-21 04:46:32,731 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:47:04] 2025-11-21 04:46:32,731 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:47:04] 2025-11-21 04:46:32,753 | INFO     | did not find any defunct processes belonging to 1129952
[2025-11-20 23:47:04] 2025-11-21 04:46:32,767 | INFO     | did not find any defunct processes belonging to 1129952
[2025-11-20 23:47:04] 2025-11-21 04:46:32,772 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:47:04] 2025-11-21 04:46:32,772 | INFO     | ready for new job
[2025-11-20 23:47:04] 2025-11-21 04:46:32,772 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:47:04] 2025-11-21 04:46:32,787 | INFO     | ***************************************
[2025-11-20 23:47:04] 2025-11-21 04:46:32,788 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:47:04] 2025-11-21 04:46:32,788 | INFO     | ***************************************
[2025-11-20 23:47:04] 2025-11-21 04:46:32,788 | INFO     | 
[2025-11-20 23:47:04] 2025-11-21 04:46:32,795 | INFO     | architecture information:
[2025-11-20 23:47:04] 2025-11-21 04:46:32,796 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:47:04] 2025-11-21 04:46:32,946 | INFO     | cat /etc/os-release:
[2025-11-20 23:47:04] NAME="CentOS Linux"
[2025-11-20 23:47:04] VERSION="7 (Core)"
[2025-11-20 23:47:04] ID="centos"
[2025-11-20 23:47:04] ID_LIKE="rhel fedora"
[2025-11-20 23:47:04] VERSION_ID="7"
[2025-11-20 23:47:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:47:04] ANSI_COLOR="0;31"
[2025-11-20 23:47:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:47:04] HOME_URL="https://www.centos.org/"
[2025-11-20 23:47:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:47:04] 
[2025-11-20 23:47:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:47:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:47:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:47:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:47:04] 
[2025-11-20 23:47:04] 2025-11-21 04:46:32,947 | INFO     | ***************************************
[2025-11-20 23:47:04] 2025-11-21 04:46:33,450 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 23:47:04] 2025-11-21 04:46:33,513 | INFO     | sufficient remaining disk space (60151562240 B)
[2025-11-20 23:47:04] 2025-11-21 04:46:33,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:47:04] 2025-11-21 04:46:33,514 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:47:04] 2025-11-21 04:46:33,514 | INFO     | update_server=False
[2025-11-20 23:47:04] 2025-11-21 04:46:33,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:47:04] 2025-11-21 04:46:33,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:47:04] 2025-11-21 04:46:33,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:47:04] 2025-11-21 04:46:33,515 | INFO     | aborting loop
[2025-11-20 23:47:04] 2025-11-21 04:46:34,029 | INFO     | all data control threads have been joined
[2025-11-20 23:47:04] 2025-11-21 04:46:34,299 | INFO     | all payload control threads have been joined
[2025-11-20 23:47:04] 2025-11-21 04:46:34,299 | INFO     | all job control threads have been joined
[2025-11-20 23:47:04] 2025-11-21 04:46:34,520 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:34,521 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:34,525 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:34,781 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:35,035 | INFO     | [data] control thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:35,042 | INFO     | [job] validate thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:35,118 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:35,129 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:35,305 | INFO     | [payload] control thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:35,313 | INFO     | [job] control thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:35,501 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:47:04] 2025-11-21 04:46:35,522 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:35,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:47:04] 2025-11-21 04:46:35,601 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:35,602 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:36,060 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:36,587 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:39,510 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:47:04] 2025-11-21 04:46:52,364 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:47:04] 2025-11-21 04:46:52,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630330390336)>', '<ExcThread(monitor, started 140629694732032)>']
[2025-11-20 23:47:04] 2025-11-21 04:46:57,475 | INFO     | all workflow threads have been joined
[2025-11-20 23:47:04] 2025-11-21 04:46:57,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:47:04] 2025-11-21 04:46:57,476 | INFO     | traces error code: 0
[2025-11-20 23:47:04] 2025-11-21 04:46:57,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:47:04] 2025-11-21 04:47:03,069 | INFO     | PID=1120657 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 23:47:04] 2025-11-21 04:47:03,073 | INFO     | .. there are 10 such processes running
[2025-11-20 23:47:04] 2025-11-21 04:47:03,075 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:47:04] 2025-11-21 04:47:03,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:47:04] 2025-11-21 04:47:03,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:47:04] 2025-11-21 04:47:03,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:47:04] 2025-11-21 04:47:03,075 | INFO     | [monitor] control thread has ended
[2025-11-20 23:47:04] 2025-11-21 04:47:03,517 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:47:04] 2025-11-21 04:47:03,570 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:47:04] 2025-11-21 04:47:03,615 [wrapper] pilotpid: 1120657
[2025-11-20 23:47:04] 2025-11-21 04:47:03,653 [wrapper] Pilot exit status: 0
[2025-11-20 23:47:04] 2025-11-21 04:47:03,768 [wrapper] pandaids: 6892522900
[2025-11-20 23:47:04] 2025-11-21 04:47:03,823 [wrapper] cleanup supervisor_pilot 3113756 1120658
[2025-11-20 23:47:04] 2025-11-21 04:47:03,826 [wrapper] Test setup, not cleaning
[2025-11-20 23:47:04] 2025-11-21 04:47:03,831 [wrapper] apfmon messages muted
[2025-11-20 23:47:04] 2025-11-21 04:47:03,850 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:47:04] 2025-11-21 04:47:03,873 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:47:04]  *** Error codes and diagnostics ***
[2025-11-20 23:47:04]     "exeErrorCode": 0,
[2025-11-20 23:47:04]     "exeErrorDiag": "",
[2025-11-20 23:47:04]     "pilotErrorCode": 0,
[2025-11-20 23:47:04]     "pilotErrorDiag": "",
[2025-11-20 23:47:04]  *** Listing of results directory ***
[2025-11-20 23:47:04] total 1327156
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:04 queuedata.json
[2025-11-20 23:47:04] -rwx------. 1 boincer umatlas     36292 Nov 19 02:06 runpilot2-wrapper.sh
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas       100 Nov 20 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:47:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 00:03 run_atlas
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas       105 Nov 20 00:03 job.xml
[2025-11-20 23:47:04] -rw-r--r--. 2 boincer umatlas 408638930 Nov 20 00:03 EVNT.47493027._000057.pool.root.1
[2025-11-20 23:47:04] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:03 start_atlas.sh
[2025-11-20 23:47:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 00:03 shared
[2025-11-20 23:47:04] -rw-r--r--. 2 boincer umatlas    590096 Nov 20 00:03 input.tar.gz
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas         0 Nov 20 00:03 boinc_lockfile
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas      2771 Nov 20 00:03 pandaJob.out
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas    989427 Nov 20 00:05 agis_schedconf.cvmfs.json
[2025-11-20 23:47:04] drwx------. 5 boincer umatlas      4096 Nov 20 00:05 pilot3
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas       533 Nov 20 23:31 boinc_task_state.xml
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas 918917288 Nov 20 23:45 HITS.47493029._000525.pool.root.1
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas      1054 Nov 20 23:46 memory_monitor_summary.json
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas   1526164 Nov 20 23:46 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas   2906021 Nov 20 23:46 log.47493029._000525.job.log.tgz.1
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas      6615 Nov 20 23:46 init_data.xml
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas      8627 Nov 20 23:46 heartbeat.json
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas        29 Nov 20 23:46 wrapper_checkpoint.txt
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 23:46 boinc_mmap_file
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas        95 Nov 20 23:47 pilot_heartbeat.json
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas       823 Nov 20 23:47 pilotlog.txt
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas  10860225 Nov 20 23:47 log.47493029._000525.job.log.1
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas       353 Nov 20 23:47 output.list
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas       620 Nov 20 23:47 runtime_log
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas  13783040 Nov 20 23:47 result.tar.gz
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas      8701 Nov 20 23:47 runtime_log.err
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas       659 Nov 20 23:47 OwgKDm6Rrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHrFKDmfTOtGm.diag
[2025-11-20 23:47:04] -rw-r--r--. 1 boincer umatlas     21846 Nov 20 23:47 stderr.txt
[2025-11-20 23:47:04] HITS file was successfully produced:
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas 918917288 Nov 20 23:45 shared/HITS.pool.root.1
[2025-11-20 23:47:04]  *** Contents of shared directory: ***
[2025-11-20 23:47:04] total 1310512
[2025-11-20 23:47:04] -rw-r--r--. 2 boincer umatlas 408638930 Nov 20 00:03 ATLAS.root_0
[2025-11-20 23:47:04] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:03 start_atlas.sh
[2025-11-20 23:47:04] -rw-r--r--. 2 boincer umatlas    590096 Nov 20 00:03 input.tar.gz
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas 918917288 Nov 20 23:45 HITS.pool.root.1
[2025-11-20 23:47:04] -rw-------. 1 boincer umatlas  13783040 Nov 20 23:47 result.tar.gz
23:47:05 (1116854): run_atlas exited; CPU time 345366.879981
23:47:05 (1116854): called boinc_finish(0)

</stderr_txt>
]]>

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