Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:39:21 (13508): wrapper (7.7.26015): starting
21:39:21 (13508): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 21:39:21] Arguments: --nthreads 8
[2025-11-22 21:39:21] Threads: 8
[2025-11-22 21:39:21] Checking for CVMFS
[2025-11-22 21:39:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 21:39:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 21:39:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 21:39:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 21:39:24] 2.11.2.0 21240 279935 145892 153184 2 85 21755235 25165824 4632 130560 105 130684278 99.877 79974251 3106 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 21:39:24] CVMFS is ok
[2025-11-22 21:39:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 21:39:24] Checking for apptainer binary...
[2025-11-22 21:39:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 21:39:24] Running /usr/bin/apptainer --version
[2025-11-22 21:39:24] apptainer version 1.3.2-1.el7
[2025-11-22 21:39:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 21:39:27] cg-vwn384.simple-grid.lan
[2025-11-22 21:39:27] apptainer works
[2025-11-22 21:39:28] Set ATHENA_PROC_NUMBER=8
[2025-11-22 21:39:28] Set ATHENA_CORE_NUMBER=8
[2025-11-22 21:39:28] Starting ATLAS job with PandaID=6892527829
[2025-11-22 21:39:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 23:28:03]  *** The last 200 lines of the pilot log: ***
[2025-11-23 23:28:03] 2025-11-23 22:27:20,483 | INFO     | PID=17329 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 23:28:03] 2025-11-23 22:27:20,483 | INFO     | .. there are 9 such processes running
[2025-11-23 23:28:03] 2025-11-23 22:27:21,484 | INFO     | time since job start (92656s) is within the limit (172800.0s)
[2025-11-23 23:28:03] 2025-11-23 22:27:22,177 | INFO     | monitor loop #6213: job 0:6892527829 is in state 'finished'
[2025-11-23 23:28:03] 2025-11-23 22:27:22,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:28:03] 2025-11-23 22:27:23,491 | INFO     | time since job start (92658s) is within the limit (172800.0s)
[2025-11-23 23:28:03] 2025-11-23 22:27:24,683 | INFO     | monitor loop #6214: job 0:6892527829 is in state 'finished'
[2025-11-23 23:28:03] 2025-11-23 22:27:24,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:28:03] 2025-11-23 22:27:25,498 | INFO     | time since job start (92660s) is within the limit (172800.0s)
[2025-11-23 23:28:03] 2025-11-23 22:27:26,203 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 23:28:03] 2025-11-23 22:27:26,204 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 23:28:03] 2025-11-23 22:27:26,206 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6892527829/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 23:28:03] 2025-11-23 22:27:26,207 | INFO     | extracted standard info from prmon json
[2025-11-23 23:28:03] 2025-11-23 22:27:26,207 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 23:28:03] 2025-11-23 22:27:26,207 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 23:28:03] 2025-11-23 22:27:26,256 | INFO     | fitting pss+swap vs Time
[2025-11-23 23:28:03] 2025-11-23 22:27:26,259 | INFO     | sum of square deviations: 1065479790873.3126
[2025-11-23 23:28:03] 2025-11-23 22:27:26,350 | INFO     | sum of deviations: 3359904396418.4062
[2025-11-23 23:28:03] 2025-11-23 22:27:26,351 | INFO     | mean x: 1763890685.3293571
[2025-11-23 23:28:03] 2025-11-23 22:27:26,351 | INFO     | mean y: 2856207.288933068
[2025-11-23 23:28:03] 2025-11-23 22:27:26,351 | INFO     | intersect: -5559430491.346587
[2025-11-23 23:28:03] 2025-11-23 22:27:26,353 | INFO     | chi2: 17.40791141336594
[2025-11-23 23:28:03] 2025-11-23 22:27:26,355 | INFO     | sum of square deviations: 1054924186164.4435
[2025-11-23 23:28:03] 2025-11-23 22:27:26,419 | INFO     | sum of deviations: 3852790862159.9697
[2025-11-23 23:28:03] 2025-11-23 22:27:26,419 | INFO     | mean x: 1763890532.8337767
[2025-11-23 23:28:03] 2025-11-23 22:27:26,419 | INFO     | mean y: 2863327.02393617
[2025-11-23 23:28:03] 2025-11-23 22:27:26,419 | INFO     | intersect: -6439212241.895761
[2025-11-23 23:28:03] 2025-11-23 22:27:26,421 | INFO     | chi2: 14.300056187087534
[2025-11-23 23:28:03] 2025-11-23 22:27:26,421 | INFO     | current chi2=14.300056187087534 (change=17.853119495381677 %)
[2025-11-23 23:28:03] 2025-11-23 22:27:26,421 | INFO     | right removable region: 1503
[2025-11-23 23:28:03] 2025-11-23 22:27:26,424 | INFO     | sum of square deviations: 1054922962504.4436
[2025-11-23 23:28:03] 2025-11-23 22:27:26,502 | INFO     | sum of deviations: 2725750151452.4126
[2025-11-23 23:28:03] 2025-11-23 22:27:26,502 | INFO     | mean x: 1763890837.8337767
[2025-11-23 23:28:03] 2025-11-23 22:27:26,503 | INFO     | mean y: 2865367.6416223403
[2025-11-23 23:28:03] 2025-11-23 22:27:26,503 | INFO     | intersect: -4554742997.386917
[2025-11-23 23:28:03] 2025-11-23 22:27:26,505 | INFO     | chi2: 12.824018768339414
[2025-11-23 23:28:03] 2025-11-23 22:27:26,505 | INFO     | current chi2=12.824018768339414 (change=26.332237889876758 %)
[2025-11-23 23:28:03] 2025-11-23 22:27:26,508 | INFO     | sum of square deviations: 1044436272060.8806
[2025-11-23 23:28:03] 2025-11-23 22:27:26,581 | INFO     | sum of deviations: 2459639204894.733
[2025-11-23 23:28:03] 2025-11-23 22:27:26,581 | INFO     | mean x: 1763890990.3368912
[2025-11-23 23:28:03] 2025-11-23 22:27:26,581 | INFO     | mean y: 2869233.988659106
[2025-11-23 23:28:03] 2025-11-23 22:27:26,582 | INFO     | intersect: -4151080173.027262
[2025-11-23 23:28:03] 2025-11-23 22:27:26,583 | INFO     | chi2: 11.920382788305467
[2025-11-23 23:28:03] 2025-11-23 22:27:26,584 | INFO     | current chi2=11.920382788305467 (change=7.0464336988096825 %)
[2025-11-23 23:28:03] 2025-11-23 22:27:26,584 | INFO     | left removable region: 20
[2025-11-23 23:28:03] 2025-11-23 22:27:26,586 | INFO     | sum of square deviations: 1011348682544.7151
[2025-11-23 23:28:03] 2025-11-23 22:27:26,645 | INFO     | sum of deviations: 2882922704865.205
[2025-11-23 23:28:03] 2025-11-23 22:27:26,645 | INFO     | mean x: 1763891112.3398516
[2025-11-23 23:28:03] 2025-11-23 22:27:26,645 | INFO     | mean y: 2880690.2892784895
[2025-11-23 23:28:03] 2025-11-23 22:27:26,646 | INFO     | intersect: -5025218742.1235075
[2025-11-23 23:28:03] 2025-11-23 22:27:26,647 | INFO     | chi2: 7.962037315582442
[2025-11-23 23:28:03] 2025-11-23 22:27:26,648 | INFO     | current memory leak: 2.85 B/s (using 1483 data points, chi2=7.96)
[2025-11-23 23:28:03] 2025-11-23 22:27:26,651 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 23:28:03] 2025-11-23 22:27:26,651 | INFO     | ..............................
[2025-11-23 23:28:03] 2025-11-23 22:27:26,651 | INFO     | . Timing measurements:
[2025-11-23 23:28:03] 2025-11-23 22:27:26,651 | INFO     | . get job = 0 s
[2025-11-23 23:28:03] 2025-11-23 22:27:26,651 | INFO     | . initial setup = 3 s
[2025-11-23 23:28:03] 2025-11-23 22:27:26,651 | INFO     | . payload setup = 151 s
[2025-11-23 23:28:03] 2025-11-23 22:27:26,651 | INFO     | . stage-in = 0 s
[2025-11-23 23:28:03] 2025-11-23 22:27:26,651 | INFO     | . payload execution = 92210 s
[2025-11-23 23:28:03] 2025-11-23 22:27:26,652 | INFO     | . stage-out = 3 s
[2025-11-23 23:28:03] 2025-11-23 22:27:26,652 | INFO     | . log creation = 1 s
[2025-11-23 23:28:03] 2025-11-23 22:27:26,652 | INFO     | ..............................
[2025-11-23 23:28:03] 2025-11-23 22:27:26,780 | INFO     | 
[2025-11-23 23:28:03] 2025-11-23 22:27:26,780 | INFO     | job summary report
[2025-11-23 23:28:03] 2025-11-23 22:27:26,780 | INFO     | --------------------------------------------------
[2025-11-23 23:28:03] 2025-11-23 22:27:26,780 | INFO     | PanDA job id: 6892527829
[2025-11-23 23:28:03] 2025-11-23 22:27:26,780 | INFO     | task id: 47493029
[2025-11-23 23:28:03] 2025-11-23 22:27:26,780 | INFO     | errors: (none)
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | pilot state: finished 
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | transexitcode: 0
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | exeerrorcode: 0
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | exeerrordiag: 
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | exitcode: 0
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | exitmsg: OK
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | cpuconsumptiontime: 343650 s
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | nevents: 1000
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | neventsw: 0
[2025-11-23 23:28:03] 2025-11-23 22:27:26,781 | INFO     | pid: 23928
[2025-11-23 23:28:03] 2025-11-23 22:27:26,782 | INFO     | pgrp: 23928
[2025-11-23 23:28:03] 2025-11-23 22:27:26,782 | INFO     | corecount: 8
[2025-11-23 23:28:03] 2025-11-23 22:27:26,782 | INFO     | event service: False
[2025-11-23 23:28:03] 2025-11-23 22:27:26,782 | INFO     | sizes: {0: 2297968, 1: 2298654, 2: 2298853, 13: 2298853, 23: 2298909, 34: 2298937, 45: 2299093, 56: 2299121, 66: 2299149, 77: 2299177, 88: 2299233, 92: 2299803, 98
[2025-11-23 23:28:03] 2025-11-23 22:27:26,782 | INFO     | --------------------------------------------------
[2025-11-23 23:28:03] 2025-11-23 22:27:26,782 | INFO     | 
[2025-11-23 23:28:03] 2025-11-23 22:27:26,782 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-23 23:28:03] 2025-11-23 22:27:27,321 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,321 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,321 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,321 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,321 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,321 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,321 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,322 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 23:28:03] 2025-11-23 22:27:27,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,323 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 23:28:03] 2025-11-23 22:27:27,323 | INFO     | job 6892527829 has completed (purged errors)
[2025-11-23 23:28:03] 2025-11-23 22:27:27,323 | INFO     | overall cleanup function is called
[2025-11-23 23:28:03] 2025-11-23 22:27:28,358 | INFO     | --- collectZombieJob: --- 10, [23928]
[2025-11-23 23:28:03] 2025-11-23 22:27:28,358 | INFO     | zombie collector waiting for pid 23928
[2025-11-23 23:28:03] 2025-11-23 22:27:28,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 23:28:03] 2025-11-23 22:27:28,359 | INFO     | collected zombie processes
[2025-11-23 23:28:03] 2025-11-23 22:27:28,359 | INFO     | will attempt to kill all subprocesses of pid=23928
[2025-11-23 23:28:03] 2025-11-23 22:27:28,487 | INFO     | process IDs to be killed: [23928] (in reverse order)
[2025-11-23 23:28:03] 2025-11-23 22:27:29,410 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 23:28:03] 2025-11-23 22:27:29,410 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 23:28:03] 2025-11-23 22:27:29,414 | INFO     | did not find any defunct processes belonging to 23928
[2025-11-23 23:28:03] 2025-11-23 22:27:29,418 | INFO     | did not find any defunct processes belonging to 23928
[2025-11-23 23:28:03] 2025-11-23 22:27:29,450 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 23:28:03] 2025-11-23 22:27:29,451 | INFO     | ready for new job
[2025-11-23 23:28:03] 2025-11-23 22:27:29,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 23:28:03] 2025-11-23 22:27:29,458 | INFO     | ***************************************
[2025-11-23 23:28:03] 2025-11-23 22:27:29,458 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 23:28:03] 2025-11-23 22:27:29,458 | INFO     | ***************************************
[2025-11-23 23:28:03] 2025-11-23 22:27:29,458 | INFO     | 
[2025-11-23 23:28:03] 2025-11-23 22:27:29,459 | INFO     | pilot is running in a VM
[2025-11-23 23:28:03] 2025-11-23 22:27:29,459 | INFO     | architecture information:
[2025-11-23 23:28:03] 2025-11-23 22:27:29,468 | INFO     | executing command: cat /etc/os-release
[2025-11-23 23:28:03] 2025-11-23 22:27:29,595 | INFO     | cat /etc/os-release:
[2025-11-23 23:28:03] NAME="CentOS Linux"
[2025-11-23 23:28:03] VERSION="7 (Core)"
[2025-11-23 23:28:03] ID="centos"
[2025-11-23 23:28:03] ID_LIKE="rhel fedora"
[2025-11-23 23:28:03] VERSION_ID="7"
[2025-11-23 23:28:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 23:28:03] ANSI_COLOR="0;31"
[2025-11-23 23:28:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 23:28:03] HOME_URL="https://www.centos.org/"
[2025-11-23 23:28:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 23:28:03] 
[2025-11-23 23:28:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 23:28:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 23:28:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 23:28:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 23:28:03] 
[2025-11-23 23:28:03] 2025-11-23 22:27:29,595 | INFO     | ***************************************
[2025-11-23 23:28:03] 2025-11-23 22:27:30,098 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-23 23:28:03] 2025-11-23 22:27:30,303 | INFO     | sufficient remaining disk space (494965620736 B)
[2025-11-23 23:28:03] 2025-11-23 22:27:30,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 23:28:03] 2025-11-23 22:27:30,303 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 23:28:03] 2025-11-23 22:27:30,304 | INFO     | update_server=False
[2025-11-23 23:28:03] 2025-11-23 22:27:30,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 23:28:03] 2025-11-23 22:27:30,482 | INFO     | all data control threads have been joined
[2025-11-23 23:28:03] 2025-11-23 22:27:30,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:28:03] 2025-11-23 22:27:30,706 | INFO     | aborting loop
[2025-11-23 23:28:03] 2025-11-23 22:27:31,310 | INFO     | [job] retrieve thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:31,479 | INFO     | all job control threads have been joined
[2025-11-23 23:28:03] 2025-11-23 22:27:31,488 | INFO     | [data] control thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:31,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 23:28:03] 2025-11-23 22:27:31,611 | INFO     | [payload] validate_post thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:31,708 | INFO     | all payload control threads have been joined
[2025-11-23 23:28:03] 2025-11-23 22:27:31,712 | INFO     | [job] job monitor thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:31,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 23:28:03] 2025-11-23 22:27:31,772 | INFO     | [job] validate thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:31,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:28:03] 2025-11-23 22:27:32,034 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:32,083 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:32,307 | INFO     | [data] copytool_in thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:32,359 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:32,408 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:32,485 | INFO     | [job] control thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:32,602 | INFO     | [payload] failed_post thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:32,713 | INFO     | [payload] control thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:32,800 | INFO     | [job] queue monitor thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:33,591 | INFO     | [data] copytool_out thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:35,769 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 23:28:03] 2025-11-23 22:27:47,415 | INFO     | [monitor] cgroup control has ended
[2025-11-23 23:28:03] 2025-11-23 22:27:49,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140425049368384)>', '<ExcThread(monitor, started 140424584865536)>']
[2025-11-23 23:28:03] 2025-11-23 22:27:54,518 | INFO     | all workflow threads have been joined
[2025-11-23 23:28:03] 2025-11-23 22:27:54,518 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 23:28:03] 2025-11-23 22:27:54,519 | INFO     | traces error code: 0
[2025-11-23 23:28:03] 2025-11-23 22:27:54,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 23:28:03] 2025-11-23 22:27:58,710 | INFO     | PID=17329 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 23:28:03] 2025-11-23 22:27:58,711 | INFO     | .. there are 9 such processes running
[2025-11-23 23:28:03] 2025-11-23 22:27:58,711 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 23:28:03] 2025-11-23 22:27:58,711 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 23:28:03] 2025-11-23 22:27:58,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 23:28:03] 2025-11-23 22:27:58,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 23:28:03] 2025-11-23 22:27:58,711 | INFO     | [monitor] control thread has ended
[2025-11-23 23:28:03] 2025-11-23 22:27:59,116 [wrapper] ==== pilot stdout END ====
[2025-11-23 23:28:03] 2025-11-23 22:27:59,254 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 23:28:03] 2025-11-23 22:27:59,382 [wrapper] pilotpid: 17329
[2025-11-23 23:28:03] 2025-11-23 22:27:59,515 [wrapper] Pilot exit status: 0
[2025-11-23 23:28:03] 2025-11-23 22:27:59,785 [wrapper] pandaids: 6892527829
[2025-11-23 23:28:03] 2025-11-23 22:28:00,561 [wrapper] cleanup supervisor_pilot 28020 17330
[2025-11-23 23:28:03] 2025-11-23 22:28:00,667 [wrapper] Test setup, not cleaning
[2025-11-23 23:28:03] 2025-11-23 22:28:00,797 [wrapper] apfmon messages muted
[2025-11-23 23:28:03] 2025-11-23 22:28:00,861 [wrapper] ==== wrapper stdout END ====
[2025-11-23 23:28:03] 2025-11-23 22:28:00,973 [wrapper] ==== wrapper stderr END ====
[2025-11-23 23:28:03]  *** Error codes and diagnostics ***
[2025-11-23 23:28:03]     "exeErrorCode": 0,
[2025-11-23 23:28:03]     "exeErrorDiag": "",
[2025-11-23 23:28:03]     "pilotErrorCode": 0,
[2025-11-23 23:28:03]     "pilotErrorDiag": "",
[2025-11-23 23:28:03]  *** Listing of results directory ***
[2025-11-23 23:28:03] total 1328072
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:12 queuedata.json
[2025-11-23 23:28:03] -rwx------. 1 boinc boinc     36292 Nov 19 08:12 runpilot2-wrapper.sh
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc       100 Nov 22 21:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 23:28:03] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 21:39 run_atlas
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc       105 Nov 22 21:39 job.xml
[2025-11-23 23:28:03] -rw-r--r--. 2 boinc boinc 410092039 Nov 22 21:39 EVNT.47493027._000140.pool.root.1
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc      6392 Nov 22 21:39 init_data.xml
[2025-11-23 23:28:03] -rw-r--r--. 2 boinc boinc     15120 Nov 22 21:39 start_atlas.sh
[2025-11-23 23:28:03] drwxrwx--x. 2 boinc boinc        68 Nov 22 21:39 shared
[2025-11-23 23:28:03] -rw-r--r--. 2 boinc boinc    590097 Nov 22 21:39 input.tar.gz
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc         0 Nov 22 21:39 boinc_lockfile
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc      2773 Nov 22 21:39 pandaJob.out
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc    989768 Nov 22 21:43 agis_schedconf.cvmfs.json
[2025-11-23 23:28:03] drwx------. 5 boinc boinc      4096 Nov 22 21:43 pilot3
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc       533 Nov 23 23:02 boinc_task_state.xml
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc 916206508 Nov 23 23:24 HITS.47493029._001353.pool.root.1
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc      1030 Nov 23 23:25 memory_monitor_summary.json
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc   1526164 Nov 23 23:25 agis_ddmendpoints.agis.ALL.json
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc   2568636 Nov 23 23:25 log.47493029._001353.job.log.tgz.1
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc        95 Nov 23 23:27 pilot_heartbeat.json
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc      7957 Nov 23 23:27 heartbeat.json
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc      8192 Nov 23 23:27 boinc_mmap_file
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc        29 Nov 23 23:27 wrapper_checkpoint.txt
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc       820 Nov 23 23:27 pilotlog.txt
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc  12302132 Nov 23 23:28 log.47493029._001353.job.log.1
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc       353 Nov 23 23:28 output.list
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc       620 Nov 23 23:28 runtime_log
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc  14888960 Nov 23 23:28 result.tar.gz
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc      8717 Nov 23 23:28 runtime_log.err
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc       662 Nov 23 23:28 1cGODm1Xrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXlGKDmIvBX3m.diag
[2025-11-23 23:28:03] -rw-r--r--. 1 boinc boinc     21301 Nov 23 23:28 stderr.txt
[2025-11-23 23:28:03] HITS file was successfully produced:
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc 916206508 Nov 23 23:24 shared/HITS.pool.root.1
[2025-11-23 23:28:03]  *** Contents of shared directory: ***
[2025-11-23 23:28:03] total 1310356
[2025-11-23 23:28:03] -rw-r--r--. 2 boinc boinc 410092039 Nov 22 21:39 ATLAS.root_0
[2025-11-23 23:28:03] -rw-r--r--. 2 boinc boinc     15120 Nov 22 21:39 start_atlas.sh
[2025-11-23 23:28:03] -rw-r--r--. 2 boinc boinc    590097 Nov 22 21:39 input.tar.gz
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc 916206508 Nov 23 23:24 HITS.pool.root.1
[2025-11-23 23:28:03] -rw-------. 1 boinc boinc  14888960 Nov 23 23:28 result.tar.gz
23:28:04 (13508): run_atlas exited; CPU time 344168.463454
23:28:04 (13508): called boinc_finish(0)

</stderr_txt>
]]>

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