Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:13:19 (3804997): wrapper (7.7.26015): starting
12:13:19 (3804997): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 12:13:19] Arguments: --nthreads 4
[2025-11-22 12:13:19] Threads: 4
[2025-11-22 12:13:19] Checking for CVMFS
[2025-11-22 12:13:19] No cvmfs_config command found, will try listing directly
[2025-11-22 12:13:19] CVMFS is ok
[2025-11-22 12:13:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 12:13:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 12:13:19] Further information can be found at the LHC@home message board.
[2025-11-22 12:13:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 12:13:19] Checking for apptainer binary...
[2025-11-22 12:13:19] which: no apptainer in ((null))
[2025-11-22 12:13:19] apptainer is not installed, using version from CVMFS
[2025-11-22 12:13:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 12:13:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-11-22 12:13:19] apptainer works
[2025-11-22 12:13:19] Set ATHENA_PROC_NUMBER=4
[2025-11-22 12:13:19] Set ATHENA_CORE_NUMBER=4
[2025-11-22 12:13:19] Starting ATLAS job with PandaID=6892527836
[2025-11-22 12:13:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 03:58:48]  *** The last 200 lines of the pilot log: ***
[2025-11-23 03:58:48] 2025-11-23 02:56:05,203 | INFO     | time since job start (56556s) is within the limit (172800.0s)
[2025-11-23 03:58:48] 2025-11-23 02:56:06,909 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 03:58:48] 2025-11-23 02:56:06,918 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2769.271312499999
[2025-11-23 03:58:48] 2025-11-23 02:56:06,930 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6892527836/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:58:48] 2025-11-23 02:56:06,931 | INFO     | extracted standard info from prmon json
[2025-11-23 03:58:48] 2025-11-23 02:56:06,931 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:58:48] 2025-11-23 02:56:06,931 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:58:48] 2025-11-23 02:56:06,946 | INFO     | fitting pss+swap vs Time
[2025-11-23 03:58:48] 2025-11-23 02:56:06,947 | INFO     | sum of square deviations: 247011381514.97293
[2025-11-23 03:58:48] 2025-11-23 02:56:06,964 | INFO     | sum of deviations: 576087726234.4177
[2025-11-23 03:58:48] 2025-11-23 02:56:06,964 | INFO     | mean x: 1763838279.0053937
[2025-11-23 03:58:48] 2025-11-23 02:56:06,965 | INFO     | mean y: 2285710.1165048545
[2025-11-23 03:58:48] 2025-11-23 02:56:06,965 | INFO     | intersect: -4111393495.1303673
[2025-11-23 03:58:48] 2025-11-23 02:56:06,966 | INFO     | chi2: 3.9330607034860514
[2025-11-23 03:58:48] 2025-11-23 02:56:06,967 | INFO     | sum of square deviations: 243035950362.47302
[2025-11-23 03:58:48] 2025-11-23 02:56:06,984 | INFO     | sum of deviations: 763937934640.6747
[2025-11-23 03:58:48] 2025-11-23 02:56:06,984 | INFO     | mean x: 1763838126.505423
[2025-11-23 03:58:48] 2025-11-23 02:56:06,984 | INFO     | mean y: 2292911.565075922
[2025-11-23 03:58:48] 2025-11-23 02:56:06,984 | INFO     | intersect: -5542001475.30803
[2025-11-23 03:58:48] 2025-11-23 02:56:06,985 | INFO     | chi2: 2.0006317451675786
[2025-11-23 03:58:48] 2025-11-23 02:56:06,985 | INFO     | current chi2=2.0006317451675786 (change=49.132955324225556 %)
[2025-11-23 03:58:48] 2025-11-23 02:56:06,987 | INFO     | sum of square deviations: 239103403734.97308
[2025-11-23 03:58:48] 2025-11-23 02:56:07,003 | INFO     | sum of deviations: 813286969771.7845
[2025-11-23 03:58:48] 2025-11-23 02:56:07,003 | INFO     | mean x: 1763837974.0054526
[2025-11-23 03:58:48] 2025-11-23 02:56:07,003 | INFO     | mean y: 2294821.8429661943
[2025-11-23 03:58:48] 2025-11-23 02:56:07,003 | INFO     | intersect: -5997228474.936754
[2025-11-23 03:58:48] 2025-11-23 02:56:07,004 | INFO     | chi2: 1.7821321421529128
[2025-11-23 03:58:48] 2025-11-23 02:56:07,005 | INFO     | current chi2=1.7821321421529128 (change=10.921530338726262 %)
[2025-11-23 03:58:48] 2025-11-23 02:56:07,005 | INFO     | right removable region: 916
[2025-11-23 03:58:48] 2025-11-23 02:56:07,006 | INFO     | sum of square deviations: 243035947312.47302
[2025-11-23 03:58:48] 2025-11-23 02:56:07,017 | INFO     | sum of deviations: 415357579337.37646
[2025-11-23 03:58:48] 2025-11-23 02:56:07,017 | INFO     | mean x: 1763838431.505423
[2025-11-23 03:58:48] 2025-11-23 02:56:07,018 | INFO     | mean y: 2291864.2245119307
[2025-11-23 03:58:48] 2025-11-23 02:56:07,018 | INFO     | intersect: -3012174388.0060196
[2025-11-23 03:58:48] 2025-11-23 02:56:07,018 | INFO     | chi2: 2.251227519979439
[2025-11-23 03:58:48] 2025-11-23 02:56:07,018 | INFO     | current chi2=2.251227519979439 (change=42.76143467645762 %)
[2025-11-23 03:58:48] 2025-11-23 02:56:07,019 | INFO     | sum of square deviations: 239103397634.97305
[2025-11-23 03:58:48] 2025-11-23 02:56:07,029 | INFO     | sum of deviations: 399198814829.59845
[2025-11-23 03:58:48] 2025-11-23 02:56:07,029 | INFO     | mean x: 1763838584.0054526
[2025-11-23 03:58:48] 2025-11-23 02:56:07,029 | INFO     | mean y: 2292490.280261723
[2025-11-23 03:58:48] 2025-11-23 02:56:07,029 | INFO     | intersect: -2942551787.3432684
[2025-11-23 03:58:48] 2025-11-23 02:56:07,030 | INFO     | chi2: 2.246867763909683
[2025-11-23 03:58:48] 2025-11-23 02:56:07,030 | INFO     | current chi2=2.246867763909683 (change=0.19366128172580072 %)
[2025-11-23 03:58:48] 2025-11-23 02:56:07,030 | INFO     | left removable region: 20
[2025-11-23 03:58:48] 2025-11-23 02:56:07,031 | INFO     | sum of square deviations: 223049746241.9724
[2025-11-23 03:58:48] 2025-11-23 02:56:07,041 | INFO     | sum of deviations: 621545495771.4259
[2025-11-23 03:58:48] 2025-11-23 02:56:07,041 | INFO     | mean x: 1763838553.5055804
[2025-11-23 03:58:48] 2025-11-23 02:56:07,041 | INFO     | mean y: 2302135.3147321427
[2025-11-23 03:58:48] 2025-11-23 02:56:07,041 | INFO     | intersect: -4912771415.184036
[2025-11-23 03:58:48] 2025-11-23 02:56:07,042 | INFO     | chi2: 0.08450811026811077
[2025-11-23 03:58:48] 2025-11-23 02:56:07,042 | INFO     | current memory leak: 2.79 B/s (using 896 data points, chi2=0.08)
[2025-11-23 03:58:48] 2025-11-23 02:56:07,042 | INFO     | could have reported an average CPU frequency of 2754 MHz (35 samples)
[2025-11-23 03:58:48] 2025-11-23 02:56:07,042 | INFO     | ..............................
[2025-11-23 03:58:48] 2025-11-23 02:56:07,042 | INFO     | . Timing measurements:
[2025-11-23 03:58:48] 2025-11-23 02:56:07,043 | INFO     | . get job = 0 s
[2025-11-23 03:58:48] 2025-11-23 02:56:07,043 | INFO     | . initial setup = 1 s
[2025-11-23 03:58:48] 2025-11-23 02:56:07,043 | INFO     | . payload setup = 5 s
[2025-11-23 03:58:48] 2025-11-23 02:56:07,043 | INFO     | . stage-in = 0 s
[2025-11-23 03:58:48] 2025-11-23 02:56:07,043 | INFO     | . payload execution = 56522 s
[2025-11-23 03:58:48] 2025-11-23 02:56:07,043 | INFO     | . stage-out = 2 s
[2025-11-23 03:58:48] 2025-11-23 02:56:07,043 | INFO     | . log creation = 0 s
[2025-11-23 03:58:48] 2025-11-23 02:56:07,043 | INFO     | ..............................
[2025-11-23 03:58:48] 2025-11-23 02:56:07,208 | INFO     | time since job start (56558s) is within the limit (172800.0s)
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | 
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | job summary report
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | --------------------------------------------------
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | PanDA job id: 6892527836
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | task id: 47493029
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | errors: (none)
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | pilot state: finished 
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | transexitcode: 0
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | exeerrorcode: 0
[2025-11-23 03:58:48] 2025-11-23 02:56:07,461 | INFO     | exeerrordiag: 
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | exitcode: 0
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | exitmsg: OK
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | cpuconsumptiontime: 223360 s
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | nevents: 1000
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | neventsw: 0
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | pid: 3815684
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | pgrp: 3815684
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | corecount: 4
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | event service: False
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | sizes: {0: 2298807, 5: 2299069, 11: 2299125, 56532: 2350151, 56536: 2359167, 56537: 2359223, 56542: 2359597}
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | --------------------------------------------------
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | 
[2025-11-23 03:58:48] 2025-11-23 02:56:07,462 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-11-23 03:58:48] 2025-11-23 02:56:07,481 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,481 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,481 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,482 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,483 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,483 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 03:58:48] 2025-11-23 02:56:07,483 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,483 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 03:58:48] 2025-11-23 02:56:07,483 | INFO     | job 6892527836 has completed (purged errors)
[2025-11-23 03:58:48] 2025-11-23 02:56:07,483 | INFO     | overall cleanup function is called
[2025-11-23 03:58:48] 2025-11-23 02:56:08,493 | INFO     | --- collectZombieJob: --- 10, [3815684]
[2025-11-23 03:58:48] 2025-11-23 02:56:08,493 | INFO     | zombie collector waiting for pid 3815684
[2025-11-23 03:58:48] 2025-11-23 02:56:08,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 03:58:48] 2025-11-23 02:56:08,494 | INFO     | collected zombie processes
[2025-11-23 03:58:48] 2025-11-23 02:56:08,494 | INFO     | will attempt to kill all subprocesses of pid=3815684
[2025-11-23 03:58:48] 2025-11-23 02:56:08,842 | INFO     | process IDs to be killed: [3815684] (in reverse order)
[2025-11-23 03:58:48] 2025-11-23 02:56:08,952 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 03:58:48] 2025-11-23 02:56:08,952 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 03:58:48] 2025-11-23 02:56:08,964 | INFO     | did not find any defunct processes belonging to 3815684
[2025-11-23 03:58:48] 2025-11-23 02:56:08,975 | INFO     | did not find any defunct processes belonging to 3815684
[2025-11-23 03:58:48] 2025-11-23 02:56:08,976 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 03:58:48] 2025-11-23 02:56:08,976 | INFO     | ready for new job
[2025-11-23 03:58:48] 2025-11-23 02:56:08,976 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 03:58:48] 2025-11-23 02:56:08,981 | INFO     | ***************************************
[2025-11-23 03:58:48] 2025-11-23 02:56:08,981 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 03:58:48] 2025-11-23 02:56:08,981 | INFO     | ***************************************
[2025-11-23 03:58:48] 2025-11-23 02:56:08,981 | INFO     | 
[2025-11-23 03:58:48] 2025-11-23 02:56:08,985 | INFO     | architecture information:
[2025-11-23 03:58:48] 2025-11-23 02:56:08,986 | INFO     | executing command: cat /etc/os-release
[2025-11-23 03:58:48] 2025-11-23 02:56:09,001 | INFO     | cat /etc/os-release:
[2025-11-23 03:58:48] NAME="CentOS Linux"
[2025-11-23 03:58:48] VERSION="7 (Core)"
[2025-11-23 03:58:48] ID="centos"
[2025-11-23 03:58:48] ID_LIKE="rhel fedora"
[2025-11-23 03:58:48] VERSION_ID="7"
[2025-11-23 03:58:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 03:58:48] ANSI_COLOR="0;31"
[2025-11-23 03:58:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 03:58:48] HOME_URL="https://www.centos.org/"
[2025-11-23 03:58:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 03:58:48] 
[2025-11-23 03:58:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 03:58:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 03:58:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 03:58:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 03:58:48] 
[2025-11-23 03:58:48] 2025-11-23 02:56:09,002 | INFO     | ***************************************
[2025-11-23 03:58:48] 2025-11-23 02:56:09,505 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-11-23 03:58:48] 2025-11-23 02:56:09,521 | INFO     | sufficient remaining disk space (686784774144 B)
[2025-11-23 03:58:48] 2025-11-23 02:56:09,521 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 03:58:48] 2025-11-23 02:56:09,522 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 03:58:48] 2025-11-23 02:56:09,522 | INFO     | update_server=False
[2025-11-23 03:58:48] 2025-11-23 02:56:09,522 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 03:58:48] 2025-11-23 02:56:09,522 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:58:48] 2025-11-23 02:56:09,522 | INFO     | aborting loop
[2025-11-23 03:58:48] 2025-11-23 02:56:09,601 | INFO     | all job control threads have been joined
[2025-11-23 03:58:48] 2025-11-23 02:56:09,636 | INFO     | all payload control threads have been joined
[2025-11-23 03:58:48] 2025-11-23 02:56:10,148 | INFO     | all data control threads have been joined
[2025-11-23 03:58:48] 2025-11-23 02:56:10,527 | INFO     | [job] retrieve thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:10,528 | INFO     | [job] job monitor thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:10,607 | INFO     | [job] control thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:10,641 | INFO     | [payload] control thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:10,800 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:10,899 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 03:58:48] 2025-11-23 02:56:10,907 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:11,153 | INFO     | [data] control thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:11,457 | INFO     | [payload] failed_post thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:11,640 | INFO     | [job] validate thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:11,770 | INFO     | [data] copytool_in thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:11,804 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:11,914 | INFO     | [payload] validate_post thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:12,106 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:58:48] 2025-11-23 02:56:12,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 03:58:48] 2025-11-23 02:56:12,904 | INFO     | [data] copytool_out thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:13,111 | INFO     | [job] queue monitor thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:16,443 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:20,251 | INFO     | job.realtimelogging is not enabled
[2025-11-23 03:58:48] 2025-11-23 02:56:21,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 03:58:48] 2025-11-23 02:56:40,735 | INFO     | PID=3808761 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 03:58:48] 2025-11-23 02:56:40,735 | INFO     | .. there are 6 such processes running
[2025-11-23 03:58:48] 2025-11-23 02:56:40,735 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 03:58:48] 2025-11-23 02:56:40,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 03:58:48] 2025-11-23 02:56:40,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 03:58:48] 2025-11-23 02:56:58,203 | INFO     | [monitor] cgroup control has ended
[2025-11-23 03:58:48] 2025-11-23 02:57:00,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22469593364288)>', '<ExcThread(monitor, started 22469358360320)>']
[2025-11-23 03:58:48] 2025-11-23 02:57:00,834 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 03:58:48] 2025-11-23 02:57:00,834 | INFO     | [monitor] control thread has ended
[2025-11-23 03:58:48] 2025-11-23 02:57:05,094 | INFO     | all workflow threads have been joined
[2025-11-23 03:58:48] 2025-11-23 02:57:05,094 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 03:58:48] 2025-11-23 02:57:05,094 | INFO     | traces error code: 0
[2025-11-23 03:58:48] 2025-11-23 02:57:05,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 03:58:48] 2025-11-23 02:57:05,232 [wrapper] ==== pilot stdout END ====
[2025-11-23 03:58:48] 2025-11-23 02:57:05,234 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 03:58:48] 2025-11-23 02:57:05,236 [wrapper] pilotpid: 3808761
[2025-11-23 03:58:48] 2025-11-23 02:57:05,239 [wrapper] Pilot exit status: 0
[2025-11-23 03:58:48] 2025-11-23 02:57:05,249 [wrapper] pandaids: 6892527836
[2025-11-23 03:58:48] 2025-11-23 02:57:05,319 [wrapper] cleanup supervisor_pilot  462623 3808762
[2025-11-23 03:58:48] 2025-11-23 02:57:05,322 [wrapper] Test setup, not cleaning
[2025-11-23 03:58:48] 2025-11-23 02:57:05,325 [wrapper] apfmon messages muted
[2025-11-23 03:58:48] 2025-11-23 02:57:05,327 [wrapper] ==== wrapper stdout END ====
[2025-11-23 03:58:48] 2025-11-23 02:57:05,330 [wrapper] ==== wrapper stderr END ====
[2025-11-23 03:58:48]  *** Error codes and diagnostics ***
[2025-11-23 03:58:48]     "exeErrorCode": 0,
[2025-11-23 03:58:48]     "exeErrorDiag": "",
[2025-11-23 03:58:48]     "pilotErrorCode": 0,
[2025-11-23 03:58:48]     "pilotErrorDiag": "",
[2025-11-23 03:58:48]  *** Listing of results directory ***
[2025-11-23 03:58:48] total 1323120
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:12 queuedata.json
[2025-11-23 03:58:48] -rwx------ 1 boinc boinc     36292 Nov 19 08:12 runpilot2-wrapper.sh
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc       100 Nov 22 12:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 03:58:48] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 12:13 run_atlas
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc       105 Nov 22 12:13 job.xml
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc      6634 Nov 22 12:13 init_data.xml
[2025-11-23 03:58:48] -rw-r--r-- 2 boinc boinc 410092039 Nov 22 12:13 EVNT.47493027._000140.pool.root.1
[2025-11-23 03:58:48] -rw-r--r-- 2 boinc boinc     15120 Nov 22 12:13 start_atlas.sh
[2025-11-23 03:58:48] drwxrwx--x 2 boinc boinc      4096 Nov 22 12:13 shared
[2025-11-23 03:58:48] -rw-r--r-- 2 boinc boinc    590099 Nov 22 12:13 input.tar.gz
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc         0 Nov 22 12:13 boinc_lockfile
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc      2773 Nov 22 12:13 pandaJob.out
[2025-11-23 03:58:48] -rw------- 1 boinc boinc    989768 Nov 22 12:13 agis_schedconf.cvmfs.json
[2025-11-23 03:58:48] drwx------ 5 boinc boinc      4096 Nov 22 12:13 pilot3
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc       532 Nov 23 03:46 boinc_task_state.xml
[2025-11-23 03:58:48] -rw------- 1 boinc boinc 921609855 Nov 23 03:55 HITS.47493029._001360.pool.root.1
[2025-11-23 03:58:48] -rw------- 1 boinc boinc      1045 Nov 23 03:55 memory_monitor_summary.json
[2025-11-23 03:58:48] -rw------- 1 boinc boinc        95 Nov 23 03:55 pilot_heartbeat.json
[2025-11-23 03:58:48] -rw------- 1 boinc boinc   1526164 Nov 23 03:55 agis_ddmendpoints.agis.ALL.json
[2025-11-23 03:58:48] -rw------- 1 boinc boinc   1687385 Nov 23 03:56 log.47493029._001360.job.log.tgz.1
[2025-11-23 03:58:48] -rw------- 1 boinc boinc      8641 Nov 23 03:56 heartbeat.json
[2025-11-23 03:58:48] -rw------- 1 boinc boinc      4905 Nov 23 03:57 pilotlog.txt
[2025-11-23 03:58:48] -rw------- 1 boinc boinc   7935540 Nov 23 03:57 log.47493029._001360.job.log.1
[2025-11-23 03:58:48] -rw------- 1 boinc boinc       353 Nov 23 03:57 output.list
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc       620 Nov 23 03:57 runtime_log
[2025-11-23 03:58:48] -rw------- 1 boinc boinc   9646080 Nov 23 03:57 result.tar.gz
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc      9070 Nov 23 03:57 runtime_log.err
[2025-11-23 03:58:48] -rw------- 1 boinc boinc       670 Nov 23 03:57 ICLODm1Xrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmalGKDmYbH8Vo.diag
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc        28 Nov 23 03:58 wrapper_checkpoint.txt
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc      8192 Nov 23 03:58 boinc_mmap_file
[2025-11-23 03:58:48] -rw-r--r-- 1 boinc boinc     21073 Nov 23 03:58 stderr.txt
[2025-11-23 03:58:48] HITS file was successfully produced:
[2025-11-23 03:58:48] -rw------- 1 boinc boinc 921609855 Nov 23 03:55 shared/HITS.pool.root.1
[2025-11-23 03:58:48]  *** Contents of shared directory: ***
[2025-11-23 03:58:48] total 1310520
[2025-11-23 03:58:48] -rw-r--r-- 2 boinc boinc 410092039 Nov 22 12:13 ATLAS.root_0
[2025-11-23 03:58:48] -rw-r--r-- 2 boinc boinc     15120 Nov 22 12:13 start_atlas.sh
[2025-11-23 03:58:48] -rw-r--r-- 2 boinc boinc    590099 Nov 22 12:13 input.tar.gz
[2025-11-23 03:58:48] -rw------- 1 boinc boinc 921609855 Nov 23 03:55 HITS.pool.root.1
[2025-11-23 03:58:48] -rw------- 1 boinc boinc   9646080 Nov 23 03:57 result.tar.gz
03:58:50 (3804997): run_atlas exited; CPU time 225403.444891
03:58:50 (3804997): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN