Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:53:16 (1240936): wrapper (7.7.26015): starting
18:53:16 (1240936): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 18:53:16] Arguments: --nthreads 4
[2025-11-23 18:53:16] Threads: 4
[2025-11-23 18:53:16] Checking for CVMFS
[2025-11-23 18:53:16] No cvmfs_config command found, will try listing directly
[2025-11-23 18:53:16] CVMFS is ok
[2025-11-23 18:53:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 18:53:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 18:53:16] Further information can be found at the LHC@home message board.
[2025-11-23 18:53:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 18:53:16] Checking for apptainer binary...
[2025-11-23 18:53:16] which: no apptainer in ((null))
[2025-11-23 18:53:16] apptainer is not installed, using version from CVMFS
[2025-11-23 18:53:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 18:53:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-11-23 18:53:16] apptainer works
[2025-11-23 18:53:16] Set ATHENA_PROC_NUMBER=4
[2025-11-23 18:53:16] Set ATHENA_CORE_NUMBER=4
[2025-11-23 18:53:16] Starting ATLAS job with PandaID=6892528004
[2025-11-23 18:53:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 11:40:24]  *** The last 200 lines of the pilot log: ***
[2025-11-24 11:40:24] 2025-11-24 10:34:16,590 | INFO     | monitor loop #4323: job 0:6892528004 is in state 'finished'
[2025-11-24 11:40:24] 2025-11-24 10:34:16,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 11:40:24] 2025-11-24 10:34:17,732 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 11:40:24] 2025-11-24 10:34:17,742 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2803.9350156250002
[2025-11-24 11:40:24] 2025-11-24 10:34:17,754 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6892528004/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 11:40:24] 2025-11-24 10:34:17,756 | INFO     | extracted standard info from prmon json
[2025-11-24 11:40:24] 2025-11-24 10:34:17,756 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 11:40:24] 2025-11-24 10:34:17,756 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 11:40:24] 2025-11-24 10:34:17,773 | INFO     | fitting pss+swap vs Time
[2025-11-24 11:40:24] 2025-11-24 10:34:17,775 | INFO     | sum of square deviations: 295435893143.9989
[2025-11-24 11:40:24] 2025-11-24 10:34:17,794 | INFO     | sum of deviations: 841561906692.499
[2025-11-24 11:40:24] 2025-11-24 10:34:17,794 | INFO     | mean x: 1763950416.5010164
[2025-11-24 11:40:24] 2025-11-24 10:34:17,795 | INFO     | mean y: 2282497.5
[2025-11-24 11:40:24] 2025-11-24 10:34:17,795 | INFO     | intersect: -5022406479.94281
[2025-11-24 11:40:24] 2025-11-24 10:34:17,796 | INFO     | chi2: 3.4959049282714285
[2025-11-24 11:40:24] 2025-11-24 10:34:17,797 | INFO     | sum of square deviations: 290955139668.9989
[2025-11-24 11:40:24] 2025-11-24 10:34:17,816 | INFO     | sum of deviations: 1024026068861.3668
[2025-11-24 11:40:24] 2025-11-24 10:34:17,817 | INFO     | mean x: 1763950264.0010214
[2025-11-24 11:40:24] 2025-11-24 10:34:17,817 | INFO     | mean y: 2288703.6322778347
[2025-11-24 11:40:24] 2025-11-24 10:34:17,817 | INFO     | intersect: -6205991571.350608
[2025-11-24 11:40:24] 2025-11-24 10:34:17,818 | INFO     | chi2: 1.7566137051439608
[2025-11-24 11:40:24] 2025-11-24 10:34:17,818 | INFO     | current chi2=1.7566137051439608 (change=49.75224609404555 %)
[2025-11-24 11:40:24] 2025-11-24 10:34:17,820 | INFO     | sum of square deviations: 286519921931.49884
[2025-11-24 11:40:24] 2025-11-24 10:34:17,839 | INFO     | sum of deviations: 1015286967694.5205
[2025-11-24 11:40:24] 2025-11-24 10:34:17,839 | INFO     | mean x: 1763950111.5010266
[2025-11-24 11:40:24] 2025-11-24 10:34:17,839 | INFO     | mean y: 2288401.978439425
[2025-11-24 11:40:24] 2025-11-24 10:34:17,840 | INFO     | intersect: -6248291131.190847
[2025-11-24 11:40:24] 2025-11-24 10:34:17,841 | INFO     | chi2: 1.748037215253152
[2025-11-24 11:40:24] 2025-11-24 10:34:17,841 | INFO     | current chi2=1.748037215253152 (change=0.4882399508607871 %)
[2025-11-24 11:40:24] 2025-11-24 10:34:17,841 | INFO     | right removable region: 973
[2025-11-24 11:40:24] 2025-11-24 10:34:17,842 | INFO     | sum of square deviations: 290955139058.9989
[2025-11-24 11:40:24] 2025-11-24 10:34:17,862 | INFO     | sum of deviations: 673251733521.4961
[2025-11-24 11:40:24] 2025-11-24 10:34:17,862 | INFO     | mean x: 1763950569.0010214
[2025-11-24 11:40:24] 2025-11-24 10:34:17,862 | INFO     | mean y: 2288215.503575077
[2025-11-24 11:40:24] 2025-11-24 10:34:17,862 | INFO     | intersect: -4079381495.7344627
[2025-11-24 11:40:24] 2025-11-24 10:34:17,864 | INFO     | chi2: 1.8464665667009317
[2025-11-24 11:40:24] 2025-11-24 10:34:17,864 | INFO     | current chi2=1.8464665667009317 (change=47.18201425420547 %)
[2025-11-24 11:40:24] 2025-11-24 10:34:17,865 | INFO     | sum of square deviations: 286519920711.4989
[2025-11-24 11:40:24] 2025-11-24 10:34:17,885 | INFO     | sum of deviations: 661396315801.0135
[2025-11-24 11:40:24] 2025-11-24 10:34:17,885 | INFO     | mean x: 1763950721.5010266
[2025-11-24 11:40:24] 2025-11-24 10:34:17,885 | INFO     | mean y: 2288622.4856262836
[2025-11-24 11:40:24] 2025-11-24 10:34:17,885 | INFO     | intersect: -4069576627.086519
[2025-11-24 11:40:24] 2025-11-24 10:34:17,887 | INFO     | chi2: 1.8444673577940498
[2025-11-24 11:40:24] 2025-11-24 10:34:17,887 | INFO     | current chi2=1.8444673577940498 (change=0.1082721422058483 %)
[2025-11-24 11:40:24] 2025-11-24 10:34:17,887 | INFO     | left removable region: 20
[2025-11-24 11:40:24] 2025-11-24 10:34:17,888 | INFO     | sum of square deviations: 268384006776.99902
[2025-11-24 11:40:24] 2025-11-24 10:34:17,906 | INFO     | sum of deviations: 824921045576.8092
[2025-11-24 11:40:24] 2025-11-24 10:34:17,907 | INFO     | mean x: 1763950691.0010493
[2025-11-24 11:40:24] 2025-11-24 10:34:17,907 | INFO     | mean y: 2294752.190975866
[2025-11-24 11:40:24] 2025-11-24 10:34:17,907 | INFO     | intersect: -5419489004.005733
[2025-11-24 11:40:24] 2025-11-24 10:34:17,908 | INFO     | chi2: 0.07645856642993287
[2025-11-24 11:40:24] 2025-11-24 10:34:17,908 | INFO     | current memory leak: 3.07 B/s (using 953 data points, chi2=0.08)
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | could have reported an average CPU frequency of 2709 MHz (37 samples)
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | ..............................
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | . Timing measurements:
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | . get job = 0 s
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | . initial setup = 1 s
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | . payload setup = 6 s
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | . stage-in = 0 s
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | . payload execution = 60013 s
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | . stage-out = 2 s
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | . log creation = 0 s
[2025-11-24 11:40:24] 2025-11-24 10:34:17,910 | INFO     | ..............................
[2025-11-24 11:40:24] 2025-11-24 10:34:18,008 | INFO     | 
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | job summary report
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | --------------------------------------------------
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | PanDA job id: 6892528004
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | task id: 47493029
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | errors: (none)
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | pilot state: finished 
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | transexitcode: 0
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | exeerrorcode: 0
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | exeerrordiag: 
[2025-11-24 11:40:24] 2025-11-24 10:34:18,009 | INFO     | exitcode: 0
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | exitmsg: OK
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | cpuconsumptiontime: 237894 s
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | nevents: 1000
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | neventsw: 0
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | pid: 1252228
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | pgrp: 1252228
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | corecount: 4
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | event service: False
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | sizes: {0: 2298807, 5: 2299069, 11: 2299125, 60024: 2351347, 60026: 2360363, 60030: 2360419, 60035: 2360793}
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | --------------------------------------------------
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | 
[2025-11-24 11:40:24] 2025-11-24 10:34:18,010 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-11-24 11:40:24] 2025-11-24 10:34:18,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | job 6892528004 has completed (purged errors)
[2025-11-24 11:40:24] 2025-11-24 10:34:18,035 | INFO     | overall cleanup function is called
[2025-11-24 11:40:24] 2025-11-24 10:34:19,048 | INFO     | --- collectZombieJob: --- 10, [1252228]
[2025-11-24 11:40:24] 2025-11-24 10:34:19,048 | INFO     | zombie collector waiting for pid 1252228
[2025-11-24 11:40:24] 2025-11-24 10:34:19,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 11:40:24] 2025-11-24 10:34:19,049 | INFO     | collected zombie processes
[2025-11-24 11:40:24] 2025-11-24 10:34:19,049 | INFO     | will attempt to kill all subprocesses of pid=1252228
[2025-11-24 11:40:24] 2025-11-24 10:34:19,464 | INFO     | process IDs to be killed: [1252228] (in reverse order)
[2025-11-24 11:40:24] 2025-11-24 10:34:19,588 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 11:40:24] 2025-11-24 10:34:19,588 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 11:40:24] 2025-11-24 10:34:19,602 | INFO     | did not find any defunct processes belonging to 1252228
[2025-11-24 11:40:24] 2025-11-24 10:34:19,616 | INFO     | did not find any defunct processes belonging to 1252228
[2025-11-24 11:40:24] 2025-11-24 10:34:19,617 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 11:40:24] 2025-11-24 10:34:19,618 | INFO     | ready for new job
[2025-11-24 11:40:24] 2025-11-24 10:34:19,618 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 11:40:24] 2025-11-24 10:34:19,624 | INFO     | ***************************************
[2025-11-24 11:40:24] 2025-11-24 10:34:19,624 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 11:40:24] 2025-11-24 10:34:19,624 | INFO     | ***************************************
[2025-11-24 11:40:24] 2025-11-24 10:34:19,624 | INFO     | 
[2025-11-24 11:40:24] 2025-11-24 10:34:19,628 | INFO     | architecture information:
[2025-11-24 11:40:24] 2025-11-24 10:34:19,629 | INFO     | executing command: cat /etc/os-release
[2025-11-24 11:40:24] 2025-11-24 10:34:19,646 | INFO     | cat /etc/os-release:
[2025-11-24 11:40:24] NAME="CentOS Linux"
[2025-11-24 11:40:24] VERSION="7 (Core)"
[2025-11-24 11:40:24] ID="centos"
[2025-11-24 11:40:24] ID_LIKE="rhel fedora"
[2025-11-24 11:40:24] VERSION_ID="7"
[2025-11-24 11:40:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 11:40:24] ANSI_COLOR="0;31"
[2025-11-24 11:40:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 11:40:24] HOME_URL="https://www.centos.org/"
[2025-11-24 11:40:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 11:40:24] 
[2025-11-24 11:40:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 11:40:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 11:40:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 11:40:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 11:40:24] 
[2025-11-24 11:40:24] 2025-11-24 10:34:19,646 | INFO     | ***************************************
[2025-11-24 11:40:24] 2025-11-24 10:34:20,150 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-11-24 11:40:24] 2025-11-24 10:34:20,170 | INFO     | sufficient remaining disk space (673623048192 B)
[2025-11-24 11:40:24] 2025-11-24 10:34:20,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 11:40:24] 2025-11-24 10:34:20,170 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 11:40:24] 2025-11-24 10:34:20,170 | INFO     | update_server=False
[2025-11-24 11:40:24] 2025-11-24 10:34:20,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 11:40:24] 2025-11-24 10:34:20,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 11:40:24] 2025-11-24 10:34:20,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:40:24] 2025-11-24 10:34:20,171 | INFO     | aborting loop
[2025-11-24 11:40:24] 2025-11-24 10:34:20,240 | INFO     | all payload control threads have been joined
[2025-11-24 11:40:24] 2025-11-24 10:34:20,292 | INFO     | all data control threads have been joined
[2025-11-24 11:40:24] 2025-11-24 10:34:21,175 | INFO     | [job] retrieve thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:21,176 | INFO     | [job] job monitor thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:21,245 | INFO     | [payload] control thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:21,296 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:21,297 | INFO     | [data] control thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:21,340 | INFO     | [payload] failed_post thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:21,572 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:21,863 | INFO     | all job control threads have been joined
[2025-11-24 11:40:24] 2025-11-24 10:34:22,176 | INFO     | [data] copytool_out thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:22,291 | INFO     | [payload] validate_post thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:22,398 | INFO     | [data] copytool_in thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:22,630 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:22,635 | INFO     | [job] validate thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:22,868 | INFO     | [job] control thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:23,014 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:40:24] 2025-11-24 10:34:23,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 11:40:24] 2025-11-24 10:34:24,019 | INFO     | [job] queue monitor thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:27,442 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:30,726 | INFO     | job.realtimelogging is not enabled
[2025-11-24 11:40:24] 2025-11-24 10:34:31,731 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 11:40:24] 2025-11-24 10:34:50,191 | INFO     | PID=1244745 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 11:40:24] 2025-11-24 10:34:50,191 | INFO     | .. there are 5 such processes running
[2025-11-24 11:40:24] 2025-11-24 10:34:50,192 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 11:40:24] 2025-11-24 10:34:50,192 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 11:40:24] 2025-11-24 10:34:50,192 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 11:40:24] 2025-11-24 10:35:03,250 | INFO     | [monitor] cgroup control has ended
[2025-11-24 11:40:24] 2025-11-24 10:35:04,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22651389568832)>', '<ExcThread(monitor, started 22651149973248)>']
[2025-11-24 11:40:24] 2025-11-24 10:35:05,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 11:40:24] 2025-11-24 10:35:05,268 | INFO     | [monitor] control thread has ended
[2025-11-24 11:40:24] 2025-11-24 10:35:09,601 | INFO     | all workflow threads have been joined
[2025-11-24 11:40:24] 2025-11-24 10:35:09,601 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 11:40:24] 2025-11-24 10:35:09,601 | INFO     | traces error code: 0
[2025-11-24 11:40:24] 2025-11-24 10:35:09,602 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 11:40:24] 2025-11-24 10:35:09,753 [wrapper] ==== pilot stdout END ====
[2025-11-24 11:40:24] 2025-11-24 10:35:09,756 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 11:40:24] 2025-11-24 10:35:09,759 [wrapper] pilotpid: 1244745
[2025-11-24 11:40:24] 2025-11-24 10:35:09,761 [wrapper] Pilot exit status: 0
[2025-11-24 11:40:24] 2025-11-24 10:35:09,771 [wrapper] pandaids: 6892528004
[2025-11-24 11:40:24] 2025-11-24 10:35:09,850 [wrapper] cleanup supervisor_pilot 2187511 1244746
[2025-11-24 11:40:24] 2025-11-24 10:35:09,853 [wrapper] Test setup, not cleaning
[2025-11-24 11:40:24] 2025-11-24 10:35:09,855 [wrapper] apfmon messages muted
[2025-11-24 11:40:24] 2025-11-24 10:35:09,858 [wrapper] ==== wrapper stdout END ====
[2025-11-24 11:40:24] 2025-11-24 10:35:09,861 [wrapper] ==== wrapper stderr END ====
[2025-11-24 11:40:24]  *** Error codes and diagnostics ***
[2025-11-24 11:40:24]     "exeErrorCode": 0,
[2025-11-24 11:40:24]     "exeErrorDiag": "",
[2025-11-24 11:40:24]     "pilotErrorCode": 0,
[2025-11-24 11:40:24]     "pilotErrorDiag": "",
[2025-11-24 11:40:24]  *** Listing of results directory ***
[2025-11-24 11:40:24] total 1323148
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:09 queuedata.json
[2025-11-24 11:40:24] -rwx------ 1 boinc boinc     36292 Nov 19 08:09 runpilot2-wrapper.sh
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc       100 Nov 23 18:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 11:40:24] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 18:53 run_atlas
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc       105 Nov 23 18:53 job.xml
[2025-11-24 11:40:24] -rw-r--r-- 2 boinc boinc 409947197 Nov 23 18:53 EVNT.47493027._000144.pool.root.1
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc      6635 Nov 23 18:53 init_data.xml
[2025-11-24 11:40:24] -rw-r--r-- 2 boinc boinc     15120 Nov 23 18:53 start_atlas.sh
[2025-11-24 11:40:24] drwxrwx--x 2 boinc boinc      4096 Nov 23 18:53 shared
[2025-11-24 11:40:24] -rw-r--r-- 2 boinc boinc    590096 Nov 23 18:53 input.tar.gz
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc         0 Nov 23 18:53 boinc_lockfile
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc      2773 Nov 23 18:53 pandaJob.out
[2025-11-24 11:40:24] -rw------- 1 boinc boinc    989786 Nov 23 18:53 agis_schedconf.cvmfs.json
[2025-11-24 11:40:24] drwx------ 5 boinc boinc      4096 Nov 23 18:53 pilot3
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc       532 Nov 24 11:26 boinc_task_state.xml
[2025-11-24 11:40:24] -rw------- 1 boinc boinc 920738978 Nov 24 11:33 HITS.47493029._001392.pool.root.1
[2025-11-24 11:40:24] -rw------- 1 boinc boinc      1045 Nov 24 11:34 memory_monitor_summary.json
[2025-11-24 11:40:24] -rw------- 1 boinc boinc   1526164 Nov 24 11:34 agis_ddmendpoints.agis.ALL.json
[2025-11-24 11:40:24] -rw------- 1 boinc boinc   1725900 Nov 24 11:34 log.47493029._001392.job.log.tgz.1
[2025-11-24 11:40:24] -rw------- 1 boinc boinc      8624 Nov 24 11:34 heartbeat.json
[2025-11-24 11:40:24] -rw------- 1 boinc boinc        95 Nov 24 11:34 pilot_heartbeat.json
[2025-11-24 11:40:24] -rw------- 1 boinc boinc      4905 Nov 24 11:35 pilotlog.txt
[2025-11-24 11:40:24] -rw------- 1 boinc boinc   8421265 Nov 24 11:35 log.47493029._001392.job.log.1
[2025-11-24 11:40:24] -rw------- 1 boinc boinc       353 Nov 24 11:35 output.list
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc       620 Nov 24 11:35 runtime_log
[2025-11-24 11:40:24] -rw------- 1 boinc boinc  10168320 Nov 24 11:35 result.tar.gz
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc      9070 Nov 24 11:35 runtime_log.err
[2025-11-24 11:40:24] -rw------- 1 boinc boinc       670 Nov 24 11:35 nduLDm4Urf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiuFKDmayU8am.diag
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc        28 Nov 24 11:40 wrapper_checkpoint.txt
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc      8192 Nov 24 11:40 boinc_mmap_file
[2025-11-24 11:40:24] -rw-r--r-- 1 boinc boinc     21076 Nov 24 11:40 stderr.txt
[2025-11-24 11:40:24] HITS file was successfully produced:
[2025-11-24 11:40:24] -rw------- 1 boinc boinc 920738978 Nov 24 11:33 shared/HITS.pool.root.1
[2025-11-24 11:40:24]  *** Contents of shared directory: ***
[2025-11-24 11:40:24] total 1310036
[2025-11-24 11:40:24] -rw-r--r-- 2 boinc boinc 409947197 Nov 23 18:53 ATLAS.root_0
[2025-11-24 11:40:24] -rw-r--r-- 2 boinc boinc     15120 Nov 23 18:53 start_atlas.sh
[2025-11-24 11:40:24] -rw-r--r-- 2 boinc boinc    590096 Nov 23 18:53 input.tar.gz
[2025-11-24 11:40:24] -rw------- 1 boinc boinc 920738978 Nov 24 11:33 HITS.pool.root.1
[2025-11-24 11:40:24] -rw------- 1 boinc boinc  10168320 Nov 24 11:35 result.tar.gz
11:40:26 (1240936): run_atlas exited; CPU time 240166.480297
11:40:26 (1240936): called boinc_finish(0)

</stderr_txt>
]]>

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