Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:51:05 (3195501): wrapper (7.7.26015): starting
17:51:05 (3195501): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 17:51:05] Arguments: --nthreads 3
[2025-11-19 17:51:05] Threads: 3
[2025-11-19 17:51:05] Checking for CVMFS
[2025-11-19 17:51:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 17:51:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 17:51:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 17:51:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 17:51:05] 2.9.2.0 4099368 1352 76972 153051 0 107 34309923 36864001 0 130560 0 9872880 99.985 185033 4289 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 17:51:05] CVMFS is ok
[2025-11-19 17:51:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 17:51:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 17:51:05] Further information can be found at the LHC@home message board.
[2025-11-19 17:51:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 17:51:05] Checking for apptainer binary...
[2025-11-19 17:51:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 17:51:05] Running /usr/bin/apptainer --version
[2025-11-19 17:51:05] apptainer version 1.4.1-1.1
[2025-11-19 17:51:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 17:51:05] thA335
[2025-11-19 17:51:05] apptainer works
[2025-11-19 17:51:05] Set ATHENA_PROC_NUMBER=3
[2025-11-19 17:51:05] Set ATHENA_CORE_NUMBER=3
[2025-11-19 17:51:05] Starting ATLAS job with PandaID=6892549056
[2025-11-19 17:51:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 17:55:22]  *** The last 200 lines of the pilot log: ***
[2025-11-19 17:55:22] 2025-11-19 16:54:33,861 | INFO     | executing command: cat /etc/os-release
[2025-11-19 17:55:22] 2025-11-19 16:54:33,871 | INFO     | cat /etc/os-release:
[2025-11-19 17:55:22] NAME="CentOS Linux"
[2025-11-19 17:55:22] VERSION="7 (Core)"
[2025-11-19 17:55:22] ID="centos"
[2025-11-19 17:55:22] ID_LIKE="rhel fedora"
[2025-11-19 17:55:22] VERSION_ID="7"
[2025-11-19 17:55:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 17:55:22] ANSI_COLOR="0;31"
[2025-11-19 17:55:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 17:55:22] HOME_URL="https://www.centos.org/"
[2025-11-19 17:55:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 17:55:22] 
[2025-11-19 17:55:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 17:55:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 17:55:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 17:55:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 17:55:22] 
[2025-11-19 17:55:22] 2025-11-19 16:54:33,871 | INFO     | ***************************************
[2025-11-19 17:55:22] 2025-11-19 16:54:34,374 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-19 17:55:22] 2025-11-19 16:54:34,388 | INFO     | sufficient remaining disk space (827328561152 B)
[2025-11-19 17:55:22] 2025-11-19 16:54:34,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 17:55:22] 2025-11-19 16:54:34,388 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 17:55:22] 2025-11-19 16:54:34,388 | INFO     | update_server=False
[2025-11-19 17:55:22] 2025-11-19 16:54:34,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 17:55:22] 2025-11-19 16:54:34,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 17:55:22] 2025-11-19 16:54:34,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 17:55:22] 2025-11-19 16:54:34,389 | INFO     | aborting loop
[2025-11-19 17:55:22] 2025-11-19 16:54:35,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 17:55:22] 2025-11-19 16:54:35,141 | INFO     | all job control threads have been joined
[2025-11-19 17:55:22] 2025-11-19 16:54:35,249 | INFO     | all data control threads have been joined
[2025-11-19 17:55:22] 2025-11-19 16:54:35,394 | INFO     | [job] retrieve thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:35,395 | INFO     | [job] queue monitor thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:35,396 | INFO     | [job] job monitor thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:35,414 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:35,523 | INFO     | [payload] failed_post thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:35,572 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:35,664 | INFO     | all payload control threads have been joined
[2025-11-19 17:55:22] 2025-11-19 16:54:36,147 | INFO     | [job] control thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:36,220 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:36,255 | INFO     | [data] control thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:36,578 | INFO     | [payload] validate_post thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:36,670 | INFO     | [payload] control thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:36,670 | INFO     | [job] validate thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:36,825 | INFO     | [data] copytool_in thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:36,861 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:37,027 | INFO     | [data] copytool_out thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:54:37,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 17:55:22] 2025-11-19 16:54:41,345 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 17:55:22] 2025-11-19 16:55:04,276 | INFO     | PID=3199236 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 17:55:22] 2025-11-19 16:55:04,276 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 17:55:22] 2025-11-19 16:55:04,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 17:55:22] 2025-11-19 16:55:04,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 17:55:22] 2025-11-19 16:55:15,385 | INFO     | [monitor] cgroup control has ended
[2025-11-19 17:55:22] 2025-11-19 16:55:17,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280650393408)>', '<ExcThread(monitor, started 140279923332864)>']
[2025-11-19 17:55:22] 2025-11-19 16:55:17,343 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 17:55:22] 2025-11-19 16:55:17,344 | INFO     | [monitor] control thread has ended
[2025-11-19 17:55:22] 2025-11-19 16:55:22,197 | INFO     | all workflow threads have been joined
[2025-11-19 17:55:22] 2025-11-19 16:55:22,198 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 17:55:22] 2025-11-19 16:55:22,198 | INFO     | traces error code: 0
[2025-11-19 17:55:22] 2025-11-19 16:55:22,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 17:55:22] 2025-11-19 16:55:22,244 [wrapper] ==== pilot stdout END ====
[2025-11-19 17:55:22] 2025-11-19 16:55:22,247 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 17:55:22] 2025-11-19 16:55:22,250 [wrapper] pilotpid: 3199236
[2025-11-19 17:55:22] 2025-11-19 16:55:22,253 [wrapper] Pilot exit status: 0
[2025-11-19 17:55:22] 2025-11-19 16:55:22,260 [wrapper] pandaids: 6892549056
[2025-11-19 17:55:22] 2025-11-19 16:55:22,275 [wrapper] cleanup supervisor_pilot 3199242 3199237
[2025-11-19 17:55:22] 2025-11-19 16:55:22,278 [wrapper] Test setup, not cleaning
[2025-11-19 17:55:22] 2025-11-19 16:55:22,281 [wrapper] apfmon messages muted
[2025-11-19 17:55:22] 2025-11-19 16:55:22,283 [wrapper] ==== wrapper stdout END ====
[2025-11-19 17:55:22] 2025-11-19 16:55:22,286 [wrapper] ==== wrapper stderr END ====
[2025-11-19 17:55:22]  *** Error codes and diagnostics ***
[2025-11-19 17:55:22]     "exeErrorCode": 65,
[2025-11-19 17:55:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 17:55:22]     "pilotErrorCode": 1305,
[2025-11-19 17:55:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 17:55:22]  *** Listing of results directory ***
[2025-11-19 17:55:22] total 405444
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc    576529 Nov 19 09:32 pilot3.tar.gz
[2025-11-19 17:55:22] -rwx------ 1 boinc boinc     36292 Nov 19 09:48 runpilot2-wrapper.sh
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc      5112 Nov 19 09:48 queuedata.json
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc       100 Nov 19 17:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 17:55:22] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 17:51 run_atlas
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc       105 Nov 19 17:51 job.xml
[2025-11-19 17:55:22] -rw-r--r-- 2 boinc boinc 410978025 Nov 19 17:51 EVNT.47493027._000349.pool.root.1
[2025-11-19 17:55:22] drwxrwx--x 2 boinc boinc      4096 Nov 19 17:51 shared
[2025-11-19 17:55:22] -rw-r--r-- 2 boinc boinc    590100 Nov 19 17:51 input.tar.gz
[2025-11-19 17:55:22] -rw-r--r-- 2 boinc boinc     15120 Nov 19 17:51 start_atlas.sh
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc         0 Nov 19 17:51 boinc_setup_complete
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc      6194 Nov 19 17:51 init_data.xml
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc         0 Nov 19 17:51 boinc_lockfile
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc      2773 Nov 19 17:51 pandaJob.out
[2025-11-19 17:55:22] -rw------- 1 boinc boinc    989426 Nov 19 17:51 agis_schedconf.cvmfs.json
[2025-11-19 17:55:22] -rw------- 1 boinc boinc   1525063 Nov 19 17:51 agis_ddmendpoints.agis.ALL.json
[2025-11-19 17:55:22] drwx------ 5 boinc boinc      4096 Nov 19 17:51 pilot3
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc       524 Nov 19 17:52 boinc_task_state.xml
[2025-11-19 17:55:22] -rw------- 1 boinc boinc       964 Nov 19 17:52 memory_monitor_summary.json
[2025-11-19 17:55:22] -rw------- 1 boinc boinc     55892 Nov 19 17:52 log.47493029._003446.job.log.tgz.1
[2025-11-19 17:55:22] -rw------- 1 boinc boinc        95 Nov 19 17:54 pilot_heartbeat.json
[2025-11-19 17:55:22] -rw------- 1 boinc boinc      8384 Nov 19 17:54 heartbeat.json
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc        23 Nov 19 17:55 wrapper_checkpoint.txt
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc      8192 Nov 19 17:55 boinc_mmap_file
[2025-11-19 17:55:22] -rw------- 1 boinc boinc      4752 Nov 19 17:55 pilotlog.txt
[2025-11-19 17:55:22] -rw------- 1 boinc boinc     91961 Nov 19 17:55 log.47493029._003446.job.log.1
[2025-11-19 17:55:22] -rw------- 1 boinc boinc       186 Nov 19 17:55 output.list
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc       620 Nov 19 17:55 runtime_log
[2025-11-19 17:55:22] -rw------- 1 boinc boinc    163840 Nov 19 17:55 result.tar.gz
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc      8624 Nov 19 17:55 runtime_log.err
[2025-11-19 17:55:22] -rw------- 1 boinc boinc       649 Nov 19 17:55 qr0NDm52sf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmC9FKDm1GFQ4m.diag
[2025-11-19 17:55:22] -rw-r--r-- 1 boinc boinc      9262 Nov 19 17:55 stderr.txt
[2025-11-19 17:55:22] No HITS result produced
[2025-11-19 17:55:22]  *** Contents of shared directory: ***
[2025-11-19 17:55:22] total 402108
[2025-11-19 17:55:22] -rw-r--r-- 2 boinc boinc 410978025 Nov 19 17:51 ATLAS.root_0
[2025-11-19 17:55:22] -rw-r--r-- 2 boinc boinc    590100 Nov 19 17:51 input.tar.gz
[2025-11-19 17:55:22] -rw-r--r-- 2 boinc boinc     15120 Nov 19 17:51 start_atlas.sh
[2025-11-19 17:55:22] -rw------- 1 boinc boinc    163840 Nov 19 17:55 result.tar.gz
17:55:24 (3195501): run_atlas exited; CPU time 31.022844
17:55:24 (3195501): called boinc_finish(0)

</stderr_txt>
]]>

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