Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
22:15:55 (2448317): wrapper (7.7.26015): starting
22:15:55 (2448317): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 22:15:55] Arguments: --nthreads 4
[2025-11-20 22:15:55] Threads: 4
[2025-11-20 22:15:55] Checking for CVMFS
[2025-11-20 22:15:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:15:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:15:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:15:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:15:56] 2.12.7.0 245311 2093 42856 153088 1 90 5814472 6144000 4693 130560 0 6231696 99.996 49869 481 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-20 22:15:56] CVMFS is ok
[2025-11-20 22:15:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 22:15:56] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-20 22:15:56] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-20 22:15:56] Further information can be found at the LHC@home message board.
[2025-11-20 22:15:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:15:56] Checking for apptainer binary...
[2025-11-20 22:15:56] apptainer is not installed, using version from CVMFS
[2025-11-20 22:15:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:15:56] biggy
[2025-11-20 22:15:56] apptainer works
[2025-11-20 22:15:56] Set ATHENA_PROC_NUMBER=4
[2025-11-20 22:15:56] Set ATHENA_CORE_NUMBER=4
[2025-11-20 22:15:56] Starting ATLAS job with PandaID=6892526577
[2025-11-20 22:15:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/single_8TB/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 05:00:55]  *** The last 200 lines of the pilot log: ***
[2025-11-21 05:00:55] 2025-11-21 04:00:20,311 | INFO     | size of work directory /single_8TB/boinc-client/slots/3/PanDA_Pilot-6892526577: 5735239 B (within 2537553920 B limit)
[2025-11-21 05:00:55] 2025-11-21 04:00:20,311 | INFO     | pfn file=/single_8TB/boinc-client/slots/3/PanDA_Pilot-6892526577/HITS.47493029._001050.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-21 05:00:55] 2025-11-21 04:00:20,311 | INFO     | total size of present files: 0 B (workdir size: 5735239 B)
[2025-11-21 05:00:55] 2025-11-21 04:00:20,311 | INFO     | output file size check: skipping output file /single_8TB/boinc-client/slots/3/PanDA_Pilot-6892526577/HITS.47493029._001050.pool.root.1 since it does not exist
[2025-11-21 05:00:55] 2025-11-21 04:00:20,383 | INFO     | number of running child processes to parent process 2458856: 1
[2025-11-21 05:00:55] 2025-11-21 04:00:20,383 | INFO     | maximum number of monitored processes: 9
[2025-11-21 05:00:55] 2025-11-21 04:00:20,577 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 05:00:55] 2025-11-21 04:00:20,577 | INFO     | job 6892526577 has state=finished
[2025-11-21 05:00:55] 2025-11-21 04:00:20,577 | INFO     | preparing for final server update for job 6892526577 in state='finished'
[2025-11-21 05:00:55] 2025-11-21 04:00:20,577 | INFO     | this job has now completed (state=finished)
[2025-11-21 05:00:55] 2025-11-21 04:00:20,577 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-21 05:00:55] 2025-11-21 04:00:20,577 | INFO     | log transfer has been attempted: DONE
[2025-11-21 05:00:55] 2025-11-21 04:00:20,577 | INFO     | job 6892526577 has finished - writing final server update
[2025-11-21 05:00:55] 2025-11-21 04:00:20,578 | INFO     | total number of processed events: 1000 (read)
[2025-11-21 05:00:55] 2025-11-21 04:00:20,578 | INFO     | executing command: lscpu
[2025-11-21 05:00:55] 2025-11-21 04:00:20,589 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-21 05:00:55] 2025-11-21 04:00:21,581 | INFO     | time since job start (24260s) is within the limit (172800.0s)
[2025-11-21 05:00:55] 2025-11-21 04:00:21,983 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 05:00:55] 2025-11-21 04:00:21,985 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4985.147656250001
[2025-11-21 05:00:55] 2025-11-21 04:00:21,987 | INFO     | using path: /single_8TB/boinc-client/slots/3/PanDA_Pilot-6892526577/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 05:00:55] 2025-11-21 04:00:21,987 | INFO     | extracted standard info from prmon json
[2025-11-21 05:00:55] 2025-11-21 04:00:21,987 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 05:00:55] 2025-11-21 04:00:21,987 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 05:00:55] 2025-11-21 04:00:21,989 | INFO     | fitting pss+swap vs Time
[2025-11-21 05:00:55] 2025-11-21 04:00:21,989 | INFO     | sum of square deviations: 19549015839.5
[2025-11-21 05:00:55] 2025-11-21 04:00:21,990 | INFO     | sum of deviations: 3547821289963.5005
[2025-11-21 05:00:55] 2025-11-21 04:00:21,990 | INFO     | mean x: 1763685487.5
[2025-11-21 05:00:55] 2025-11-21 04:00:21,990 | INFO     | mean y: 3594503.0728643215
[2025-11-21 05:00:55] 2025-11-21 04:00:21,990 | INFO     | intersect: -320075992762.3388
[2025-11-21 05:00:55] 2025-11-21 04:00:21,990 | INFO     | chi2: 21.488590209781382
[2025-11-21 05:00:55] 2025-11-21 04:00:21,991 | INFO     | sum of square deviations: 18821458012.0
[2025-11-21 05:00:55] 2025-11-21 04:00:21,992 | INFO     | sum of deviations: 3650795989867.999
[2025-11-21 05:00:55] 2025-11-21 04:00:21,992 | INFO     | mean x: 1763685335.0
[2025-11-21 05:00:55] 2025-11-21 04:00:21,992 | INFO     | mean y: 3615961.592875318
[2025-11-21 05:00:55] 2025-11-21 04:00:21,992 | INFO     | intersect: -342098220373.3912
[2025-11-21 05:00:55] 2025-11-21 04:00:21,992 | INFO     | chi2: 20.40727773973136
[2025-11-21 05:00:55] 2025-11-21 04:00:21,992 | INFO     | current chi2=20.40727773973136 (change=5.032030763739077 %)
[2025-11-21 05:00:55] 2025-11-21 04:00:21,992 | INFO     | right removable region: 392
[2025-11-21 05:00:55] 2025-11-21 04:00:21,992 | INFO     | sum of square deviations: 18821458012.0
[2025-11-21 05:00:55] 2025-11-21 04:00:21,993 | INFO     | sum of deviations: 3404666950666.0107
[2025-11-21 05:00:55] 2025-11-21 04:00:21,993 | INFO     | mean x: 1763685640.0
[2025-11-21 05:00:55] 2025-11-21 04:00:21,993 | INFO     | mean y: 3624443.4783715014
[2025-11-21 05:00:55] 2025-11-21 04:00:21,993 | INFO     | intersect: -319034475901.55194
[2025-11-21 05:00:55] 2025-11-21 04:00:21,993 | INFO     | chi2: 19.84349269940662
[2025-11-21 05:00:55] 2025-11-21 04:00:21,993 | INFO     | current chi2=19.84349269940662 (change=7.655679103722354 %)
[2025-11-21 05:00:55] 2025-11-21 04:00:21,993 | INFO     | left removable region: 10
[2025-11-21 05:00:55] 2025-11-21 04:00:21,994 | INFO     | sum of square deviations: 17284846875.5
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | sum of deviations: 3396809893093.5005
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | mean x: 1763685609.5
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | mean y: 3662685.7565445025
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | intersect: -346594995075.44745
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | chi2: 18.155851429873103
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | current memory leak: 196.52 B/s (using 382 data points, chi2=18.16)
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | could have reported an average CPU frequency of 5115 MHz (17 samples)
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | ..............................
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | . Timing measurements:
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | . get job = 0 s
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | . initial setup = 1 s
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | . payload setup = 2 s
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | . stage-in = 0 s
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | . payload execution = 24235 s
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | . stage-out = 2 s
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | . log creation = 0 s
[2025-11-21 05:00:55] 2025-11-21 04:00:21,995 | INFO     | ..............................
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | 
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | job summary report
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | --------------------------------------------------
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | PanDA job id: 6892526577
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | task id: 47493029
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | errors: (none)
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | pilot state: finished 
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | transexitcode: 0
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | exeerrorcode: 0
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | exeerrordiag: 
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | exitcode: 0
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | exitmsg: OK
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | cpuconsumptiontime: 95400 s
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | nevents: 1000
[2025-11-21 05:00:55] 2025-11-21 04:00:22,018 | INFO     | neventsw: 0
[2025-11-21 05:00:55] 2025-11-21 04:00:22,019 | INFO     | pid: 2458856
[2025-11-21 05:00:55] 2025-11-21 04:00:22,019 | INFO     | pgrp: 2458856
[2025-11-21 05:00:55] 2025-11-21 04:00:22,019 | INFO     | corecount: 4
[2025-11-21 05:00:55] 2025-11-21 04:00:22,019 | INFO     | event service: False
[2025-11-21 05:00:55] 2025-11-21 04:00:22,019 | INFO     | sizes: {0: 2298806, 2: 2299068, 11: 2299096, 24241: 2335514, 24242: 2335513, 24244: 2344583, 24245: 2344767, 24248: 2345105}
[2025-11-21 05:00:55] 2025-11-21 04:00:22,019 | INFO     | --------------------------------------------------
[2025-11-21 05:00:55] 2025-11-21 04:00:22,019 | INFO     | 
[2025-11-21 05:00:55] 2025-11-21 04:00:22,019 | INFO     | executing command: ls -lF /single_8TB/boinc-client/slots/3
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | job 6892526577 has completed (purged errors)
[2025-11-21 05:00:55] 2025-11-21 04:00:22,027 | INFO     | overall cleanup function is called
[2025-11-21 05:00:55] 2025-11-21 04:00:23,037 | INFO     | --- collectZombieJob: --- 10, [2458856]
[2025-11-21 05:00:55] 2025-11-21 04:00:23,037 | INFO     | zombie collector waiting for pid 2458856
[2025-11-21 05:00:55] 2025-11-21 04:00:23,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 05:00:55] 2025-11-21 04:00:23,037 | INFO     | collected zombie processes
[2025-11-21 05:00:55] 2025-11-21 04:00:23,037 | INFO     | will attempt to kill all subprocesses of pid=2458856
[2025-11-21 05:00:55] 2025-11-21 04:00:23,107 | INFO     | process IDs to be killed: [2458856] (in reverse order)
[2025-11-21 05:00:55] 2025-11-21 04:00:23,154 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 05:00:55] 2025-11-21 04:00:23,154 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 05:00:55] 2025-11-21 04:00:23,158 | INFO     | did not find any defunct processes belonging to 2458856
[2025-11-21 05:00:55] 2025-11-21 04:00:23,160 | INFO     | did not find any defunct processes belonging to 2458856
[2025-11-21 05:00:55] 2025-11-21 04:00:23,161 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 05:00:55] 2025-11-21 04:00:23,161 | INFO     | ready for new job
[2025-11-21 05:00:55] 2025-11-21 04:00:23,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 05:00:55] 2025-11-21 04:00:23,162 | INFO     | ***************************************
[2025-11-21 05:00:55] 2025-11-21 04:00:23,162 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 05:00:55] 2025-11-21 04:00:23,162 | INFO     | ***************************************
[2025-11-21 05:00:55] 2025-11-21 04:00:23,162 | INFO     | 
[2025-11-21 05:00:55] 2025-11-21 04:00:23,163 | INFO     | architecture information:
[2025-11-21 05:00:55] 2025-11-21 04:00:23,163 | INFO     | executing command: cat /etc/os-release
[2025-11-21 05:00:55] 2025-11-21 04:00:23,168 | INFO     | cat /etc/os-release:
[2025-11-21 05:00:55] NAME="CentOS Linux"
[2025-11-21 05:00:55] VERSION="7 (Core)"
[2025-11-21 05:00:55] ID="centos"
[2025-11-21 05:00:55] ID_LIKE="rhel fedora"
[2025-11-21 05:00:55] VERSION_ID="7"
[2025-11-21 05:00:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 05:00:55] ANSI_COLOR="0;31"
[2025-11-21 05:00:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 05:00:55] HOME_URL="https://www.centos.org/"
[2025-11-21 05:00:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 05:00:55] 
[2025-11-21 05:00:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 05:00:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 05:00:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 05:00:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 05:00:55] 
[2025-11-21 05:00:55] 2025-11-21 04:00:23,168 | INFO     | ***************************************
[2025-11-21 05:00:55] 2025-11-21 04:00:23,671 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/3
[2025-11-21 05:00:55] 2025-11-21 04:00:23,677 | INFO     | sufficient remaining disk space (950599155712 B)
[2025-11-21 05:00:55] 2025-11-21 04:00:23,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 05:00:55] 2025-11-21 04:00:23,677 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 05:00:55] 2025-11-21 04:00:23,677 | INFO     | update_server=False
[2025-11-21 05:00:55] 2025-11-21 04:00:23,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 05:00:55] 2025-11-21 04:00:23,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:00:55] 2025-11-21 04:00:23,891 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:00:55] 2025-11-21 04:00:23,891 | INFO     | aborting loop
[2025-11-21 05:00:55] 2025-11-21 04:00:24,119 | INFO     | all data control threads have been joined
[2025-11-21 05:00:55] 2025-11-21 04:00:24,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 05:00:55] 2025-11-21 04:00:24,682 | INFO     | [job] retrieve thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:24,682 | INFO     | [job] queue monitor thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:24,792 | INFO     | [data] copytool_in thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:24,896 | INFO     | [job] job monitor thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:24,979 | INFO     | [payload] failed_post thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:25,012 | INFO     | all payload control threads have been joined
[2025-11-21 05:00:55] 2025-11-21 04:00:25,124 | INFO     | [data] control thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:25,140 | INFO     | [payload] validate_post thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:25,298 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:25,331 | INFO     | all job control threads have been joined
[2025-11-21 05:00:55] 2025-11-21 04:00:25,580 | INFO     | [job] validate thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:25,583 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:25,743 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:25,753 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 05:00:55] 2025-11-21 04:00:25,757 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:26,017 | INFO     | [payload] control thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:26,137 | INFO     | [data] copytool_out thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:26,336 | INFO     | [job] control thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:29,758 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 05:00:55] 2025-11-21 04:00:40,989 | INFO     | [monitor] cgroup control has ended
[2025-11-21 05:00:55] 2025-11-21 04:00:42,124 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136792330229568)>', '<ExcThread(monitor, started 136791260645120)>']
[2025-11-21 05:00:55] 2025-11-21 04:00:47,149 | INFO     | all workflow threads have been joined
[2025-11-21 05:00:55] 2025-11-21 04:00:47,149 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 05:00:55] 2025-11-21 04:00:47,149 | INFO     | traces error code: 0
[2025-11-21 05:00:55] 2025-11-21 04:00:47,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 05:00:55] 2025-11-21 04:00:54,726 | INFO     | PID=2452169 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 05:00:55] 2025-11-21 04:00:54,727 | INFO     | .. there are 6 such processes running
[2025-11-21 05:00:55] 2025-11-21 04:00:54,727 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 05:00:55] 2025-11-21 04:00:54,727 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 05:00:55] 2025-11-21 04:00:54,727 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 05:00:55] 2025-11-21 04:00:54,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 05:00:55] 2025-11-21 04:00:54,727 | INFO     | [monitor] control thread has ended
[2025-11-21 05:00:55] 2025-11-21 04:00:54,779 [wrapper] ==== pilot stdout END ====
[2025-11-21 05:00:55] 2025-11-21 04:00:54,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 05:00:55] 2025-11-21 04:00:54,781 [wrapper] pilotpid: 2452169
[2025-11-21 05:00:55] 2025-11-21 04:00:54,782 [wrapper] Pilot exit status: 0
[2025-11-21 05:00:55] 2025-11-21 04:00:54,786 [wrapper] pandaids: 6892526577
[2025-11-21 05:00:55] 2025-11-21 04:00:54,808 [wrapper] cleanup supervisor_pilot 2829056 2452170
[2025-11-21 05:00:55] 2025-11-21 04:00:54,809 [wrapper] Test setup, not cleaning
[2025-11-21 05:00:55] 2025-11-21 04:00:54,810 [wrapper] apfmon messages muted
[2025-11-21 05:00:55] 2025-11-21 04:00:54,811 [wrapper] ==== wrapper stdout END ====
[2025-11-21 05:00:55] 2025-11-21 04:00:54,812 [wrapper] ==== wrapper stderr END ====
[2025-11-21 05:00:55]  *** Error codes and diagnostics ***
[2025-11-21 05:00:55]     "exeErrorCode": 0,
[2025-11-21 05:00:55]     "exeErrorDiag": "",
[2025-11-21 05:00:55]     "pilotErrorCode": 0,
[2025-11-21 05:00:55]     "pilotErrorDiag": "",
[2025-11-21 05:00:55]  *** Listing of results directory ***
[2025-11-21 05:00:55] total 1311312
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:10 queuedata.json
[2025-11-21 05:00:55] -rwx------ 1 boinc boinc     36292 Nov 19 08:10 runpilot2-wrapper.sh
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc       100 Nov 20 22:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc       105 Nov 20 22:15 job.xml
[2025-11-21 05:00:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 22:15 run_atlas
[2025-11-21 05:00:55] -rw-r--r-- 2 boinc boinc 411767043 Nov 20 22:15 EVNT.47493027._000109.pool.root.1
[2025-11-21 05:00:55] -rw-r--r-- 2 boinc boinc    590094 Nov 20 22:15 input.tar.gz
[2025-11-21 05:00:55] drwxrwx--x 2 boinc boinc         5 Nov 20 22:15 shared
[2025-11-21 05:00:55] -rw-r--r-- 2 boinc boinc     15120 Nov 20 22:15 start_atlas.sh
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc         0 Nov 20 22:15 boinc_setup_complete
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc         0 Nov 20 22:15 boinc_lockfile
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc      2773 Nov 20 22:15 pandaJob.out
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc      2145 Nov 20 22:15 stderr.txt
[2025-11-21 05:00:55] -rw------- 1 boinc boinc    989440 Nov 20 22:16 agis_schedconf.cvmfs.json
[2025-11-21 05:00:55] drwx------ 5 boinc boinc        22 Nov 20 22:16 pilot3
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc      6809 Nov 20 22:17 init_data.xml
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc       531 Nov 21 04:55 boinc_task_state.xml
[2025-11-21 05:00:55] -rw------- 1 boinc boinc 921211922 Nov 21 04:59 HITS.47493029._001050.pool.root.1
[2025-11-21 05:00:55] -rw------- 1 boinc boinc        95 Nov 21 05:00 pilot_heartbeat.json
[2025-11-21 05:00:55] -rw------- 1 boinc boinc      1065 Nov 21 05:00 memory_monitor_summary.json
[2025-11-21 05:00:55] -rw------- 1 boinc boinc   1526164 Nov 21 05:00 agis_ddmendpoints.agis.ALL.json
[2025-11-21 05:00:55] -rw------- 1 boinc boinc   1259734 Nov 21 05:00 log.47493029._001050.job.log.tgz.1
[2025-11-21 05:00:55] -rw------- 1 boinc boinc      8615 Nov 21 05:00 heartbeat.json
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc      8192 Nov 21 05:00 boinc_mmap_file
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc        28 Nov 21 05:00 wrapper_checkpoint.txt
[2025-11-21 05:00:55] -rw------- 1 boinc boinc       822 Nov 21 05:00 pilotlog.txt
[2025-11-21 05:00:55] -rw------- 1 boinc boinc   3515339 Nov 21 05:00 log.47493029._001050.job.log.1
[2025-11-21 05:00:55] -rw------- 1 boinc boinc       353 Nov 21 05:00 output.list
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc       620 Nov 21 05:00 runtime_log
[2025-11-21 05:00:55] -rw------- 1 boinc boinc   4792320 Nov 21 05:00 result.tar.gz
[2025-11-21 05:00:55] -rw------- 1 boinc boinc       661 Nov 21 05:00 wn3NDmsVrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhiGKDmyOqKxn.diag
[2025-11-21 05:00:55] -rw-r--r-- 1 boinc boinc      8806 Nov 21 05:00 runtime_log.err
[2025-11-21 05:00:55] HITS file was successfully produced:
[2025-11-21 05:00:55] -rw------- 1 boinc boinc 921211922 Nov 21 04:59 shared/HITS.pool.root.1
[2025-11-21 05:00:55]  *** Contents of shared directory: ***
[2025-11-21 05:00:55] total 1303352
[2025-11-21 05:00:55] -rw-r--r-- 2 boinc boinc 411767043 Nov 20 22:15 ATLAS.root_0
[2025-11-21 05:00:55] -rw-r--r-- 2 boinc boinc    590094 Nov 20 22:15 input.tar.gz
[2025-11-21 05:00:55] -rw-r--r-- 2 boinc boinc     15120 Nov 20 22:15 start_atlas.sh
[2025-11-21 05:00:55] -rw------- 1 boinc boinc 921211922 Nov 21 04:59 HITS.pool.root.1
[2025-11-21 05:00:55] -rw------- 1 boinc boinc   4792320 Nov 21 05:00 result.tar.gz
05:00:56 (2448317): run_atlas exited; CPU time 95419.036769
05:00:56 (2448317): called boinc_finish(0)

</stderr_txt>
]]>

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