Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:43:25 (437309): wrapper (7.7.26015): starting
09:43:25 (437309): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 09:43:25] Arguments: --nthreads 4
[2025-11-23 09:43:25] Threads: 4
[2025-11-23 09:43:25] Checking for CVMFS
[2025-11-23 09:43:25] No cvmfs_config command found, will try listing directly
[2025-11-23 09:43:25] CVMFS is ok
[2025-11-23 09:43:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:43:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:43:25] Further information can be found at the LHC@home message board.
[2025-11-23 09:43:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:43:25] Checking for apptainer binary...
[2025-11-23 09:43:25] which: no apptainer in ((null))
[2025-11-23 09:43:25] apptainer is not installed, using version from CVMFS
[2025-11-23 09:43:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:43:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-11-23 09:43:25] apptainer works
[2025-11-23 09:43:25] Set ATHENA_PROC_NUMBER=4
[2025-11-23 09:43:25] Set ATHENA_CORE_NUMBER=4
[2025-11-23 09:43:25] Starting ATLAS job with PandaID=6892526467
[2025-11-23 09:43:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:40:23]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:40:23] 2025-11-24 01:24:38,903 | INFO     | time since job start (60062s) is within the limit (172800.0s)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,130 | INFO     | monitor loop #4256: job 0:6892526467 is in state 'finished'
[2025-11-24 02:40:23] 2025-11-24 01:24:40,130 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,517 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 02:40:23] 2025-11-24 01:24:40,526 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2580.513109374999
[2025-11-24 02:40:23] 2025-11-24 01:24:40,539 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6892526467/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,539 | INFO     | extracted standard info from prmon json
[2025-11-24 02:40:23] 2025-11-24 01:24:40,540 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:40:23] 2025-11-24 01:24:40,540 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:40:23] 2025-11-24 01:24:40,561 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:40:23] 2025-11-24 01:24:40,566 | INFO     | sum of square deviations: 295437242258.29175
[2025-11-24 02:40:23] 2025-11-24 01:24:40,590 | INFO     | sum of deviations: 811938188498.7495
[2025-11-24 02:40:23] 2025-11-24 01:24:40,590 | INFO     | mean x: 1763917425.5416667
[2025-11-24 02:40:23] 2025-11-24 01:24:40,590 | INFO     | mean y: 2298843.0304878047
[2025-11-24 02:40:23] 2025-11-24 01:24:40,590 | INFO     | intersect: -4845403864.347064
[2025-11-24 02:40:23] 2025-11-24 01:24:40,592 | INFO     | chi2: 3.8773605084801805
[2025-11-24 02:40:23] 2025-11-24 01:24:40,593 | INFO     | sum of square deviations: 290956500983.2831
[2025-11-24 02:40:23] 2025-11-24 01:24:40,615 | INFO     | sum of deviations: 1016535899278.921
[2025-11-24 02:40:23] 2025-11-24 01:24:40,619 | INFO     | mean x: 1763917273.0418794
[2025-11-24 02:40:23] 2025-11-24 01:24:40,619 | INFO     | mean y: 2305803.782431052
[2025-11-24 02:40:23] 2025-11-24 01:24:40,619 | INFO     | intersect: -6160420326.568823
[2025-11-24 02:40:23] 2025-11-24 01:24:40,621 | INFO     | chi2: 1.8267635429992037
[2025-11-24 02:40:23] 2025-11-24 01:24:40,621 | INFO     | current chi2=1.8267635429992037 (change=52.88641489477476 %)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,622 | INFO     | sum of square deviations: 286521295445.7742
[2025-11-24 02:40:23] 2025-11-24 01:24:40,645 | INFO     | sum of deviations: 1034221242617.0424
[2025-11-24 02:40:23] 2025-11-24 01:24:40,645 | INFO     | mean x: 1763917120.5420945
[2025-11-24 02:40:23] 2025-11-24 01:24:40,645 | INFO     | mean y: 2306408.9014373715
[2025-11-24 02:40:23] 2025-11-24 01:24:40,646 | INFO     | intersect: -6364691734.96175
[2025-11-24 02:40:23] 2025-11-24 01:24:40,647 | INFO     | chi2: 1.74324860783865
[2025-11-24 02:40:23] 2025-11-24 01:24:40,647 | INFO     | current chi2=1.74324860783865 (change=4.571743041435886 %)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,647 | INFO     | right removable region: 973
[2025-11-24 02:40:23] 2025-11-24 01:24:40,648 | INFO     | sum of square deviations: 290956475973.2829
[2025-11-24 02:40:23] 2025-11-24 01:24:40,667 | INFO     | sum of deviations: 642600635213.267
[2025-11-24 02:40:23] 2025-11-24 01:24:40,668 | INFO     | mean x: 1763917578.0418794
[2025-11-24 02:40:23] 2025-11-24 01:24:40,668 | INFO     | mean y: 2304595.9203268643
[2025-11-24 02:40:23] 2025-11-24 01:24:40,668 | INFO     | intersect: -3893448376.4852176
[2025-11-24 02:40:23] 2025-11-24 01:24:40,669 | INFO     | chi2: 2.231358280856846
[2025-11-24 02:40:23] 2025-11-24 01:24:40,670 | INFO     | current chi2=2.231358280856846 (change=42.4516168672828 %)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,671 | INFO     | sum of square deviations: 286521245425.77405
[2025-11-24 02:40:23] 2025-11-24 01:24:40,690 | INFO     | sum of deviations: 631059136750.0505
[2025-11-24 02:40:23] 2025-11-24 01:24:40,690 | INFO     | mean x: 1763917730.5420945
[2025-11-24 02:40:23] 2025-11-24 01:24:40,690 | INFO     | mean y: 2304992.181724846
[2025-11-24 02:40:23] 2025-11-24 01:24:40,690 | INFO     | intersect: -3882699760.885951
[2025-11-24 02:40:23] 2025-11-24 01:24:40,691 | INFO     | chi2: 2.2298691934155253
[2025-11-24 02:40:23] 2025-11-24 01:24:40,691 | INFO     | current chi2=2.2298691934155253 (change=0.06673457391830817 %)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,692 | INFO     | left removable region: 20
[2025-11-24 02:40:23] 2025-11-24 01:24:40,693 | INFO     | sum of square deviations: 268385333931.23608
[2025-11-24 02:40:23] 2025-11-24 01:24:40,711 | INFO     | sum of deviations: 845175536817.8018
[2025-11-24 02:40:23] 2025-11-24 01:24:40,712 | INFO     | mean x: 1763917700.043022
[2025-11-24 02:40:23] 2025-11-24 01:24:40,712 | INFO     | mean y: 2312821.5414480586
[2025-11-24 02:40:23] 2025-11-24 01:24:40,712 | INFO     | intersect: -5552461976.317855
[2025-11-24 02:40:23] 2025-11-24 01:24:40,713 | INFO     | chi2: 0.07369208425863444
[2025-11-24 02:40:23] 2025-11-24 01:24:40,713 | INFO     | current memory leak: 3.15 B/s (using 953 data points, chi2=0.07)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,714 | INFO     | could have reported an average CPU frequency of 2643 MHz (36 samples)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | ..............................
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | . Timing measurements:
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | . get job = 0 s
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | . initial setup = 1 s
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | . payload setup = 6 s
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | . stage-in = 0 s
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | . payload execution = 60009 s
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | . stage-out = 2 s
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | . log creation = 0 s
[2025-11-24 02:40:23] 2025-11-24 01:24:40,715 | INFO     | ..............................
[2025-11-24 02:40:23] 2025-11-24 01:24:40,858 | INFO     | 
[2025-11-24 02:40:23] 2025-11-24 01:24:40,858 | INFO     | job summary report
[2025-11-24 02:40:23] 2025-11-24 01:24:40,859 | INFO     | --------------------------------------------------
[2025-11-24 02:40:23] 2025-11-24 01:24:40,859 | INFO     | PanDA job id: 6892526467
[2025-11-24 02:40:23] 2025-11-24 01:24:40,859 | INFO     | task id: 47493029
[2025-11-24 02:40:23] 2025-11-24 01:24:40,859 | INFO     | errors: (none)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:40:23] 2025-11-24 01:24:40,859 | INFO     | pilot state: finished 
[2025-11-24 02:40:23] 2025-11-24 01:24:40,859 | INFO     | transexitcode: 0
[2025-11-24 02:40:23] 2025-11-24 01:24:40,859 | INFO     | exeerrorcode: 0
[2025-11-24 02:40:23] 2025-11-24 01:24:40,860 | INFO     | exeerrordiag: 
[2025-11-24 02:40:23] 2025-11-24 01:24:40,861 | INFO     | exitcode: 0
[2025-11-24 02:40:23] 2025-11-24 01:24:40,861 | INFO     | exitmsg: OK
[2025-11-24 02:40:23] 2025-11-24 01:24:40,861 | INFO     | cpuconsumptiontime: 233269 s
[2025-11-24 02:40:23] 2025-11-24 01:24:40,861 | INFO     | nevents: 1000
[2025-11-24 02:40:23] 2025-11-24 01:24:40,862 | INFO     | neventsw: 0
[2025-11-24 02:40:23] 2025-11-24 01:24:40,862 | INFO     | pid: 448444
[2025-11-24 02:40:23] 2025-11-24 01:24:40,862 | INFO     | pgrp: 448444
[2025-11-24 02:40:23] 2025-11-24 01:24:40,862 | INFO     | corecount: 4
[2025-11-24 02:40:23] 2025-11-24 01:24:40,862 | INFO     | event service: False
[2025-11-24 02:40:23] 2025-11-24 01:24:40,862 | INFO     | sizes: {0: 2298807, 5: 2299069, 11: 2299125, 60019: 2351882, 60024: 2360898, 60027: 2360954, 60048: 2361328}
[2025-11-24 02:40:23] 2025-11-24 01:24:40,862 | INFO     | --------------------------------------------------
[2025-11-24 02:40:23] 2025-11-24 01:24:40,862 | INFO     | 
[2025-11-24 02:40:23] 2025-11-24 01:24:40,862 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-11-24 02:40:23] 2025-11-24 01:24:40,886 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,886 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,886 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,886 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,886 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,886 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,888 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,888 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,888 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:40:23] 2025-11-24 01:24:40,888 | INFO     | job 6892526467 has completed (purged errors)
[2025-11-24 02:40:23] 2025-11-24 01:24:40,888 | INFO     | overall cleanup function is called
[2025-11-24 02:40:23] 2025-11-24 01:24:41,906 | INFO     | --- collectZombieJob: --- 10, [448444]
[2025-11-24 02:40:23] 2025-11-24 01:24:41,906 | INFO     | zombie collector waiting for pid 448444
[2025-11-24 02:40:23] 2025-11-24 01:24:41,906 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:40:23] 2025-11-24 01:24:41,907 | INFO     | collected zombie processes
[2025-11-24 02:40:23] 2025-11-24 01:24:41,907 | INFO     | will attempt to kill all subprocesses of pid=448444
[2025-11-24 02:40:23] 2025-11-24 01:24:42,514 | INFO     | process IDs to be killed: [448444] (in reverse order)
[2025-11-24 02:40:23] 2025-11-24 01:24:42,745 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:40:23] 2025-11-24 01:24:42,746 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:40:23] 2025-11-24 01:24:42,764 | INFO     | did not find any defunct processes belonging to 448444
[2025-11-24 02:40:23] 2025-11-24 01:24:42,779 | INFO     | did not find any defunct processes belonging to 448444
[2025-11-24 02:40:23] 2025-11-24 01:24:42,784 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:40:23] 2025-11-24 01:24:42,784 | INFO     | ready for new job
[2025-11-24 02:40:23] 2025-11-24 01:24:42,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:40:23] 2025-11-24 01:24:42,790 | INFO     | ***************************************
[2025-11-24 02:40:23] 2025-11-24 01:24:42,790 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:40:23] 2025-11-24 01:24:42,790 | INFO     | ***************************************
[2025-11-24 02:40:23] 2025-11-24 01:24:42,790 | INFO     | 
[2025-11-24 02:40:23] 2025-11-24 01:24:42,795 | INFO     | architecture information:
[2025-11-24 02:40:23] 2025-11-24 01:24:42,795 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:40:23] 2025-11-24 01:24:42,834 | INFO     | cat /etc/os-release:
[2025-11-24 02:40:23] NAME="CentOS Linux"
[2025-11-24 02:40:23] VERSION="7 (Core)"
[2025-11-24 02:40:23] ID="centos"
[2025-11-24 02:40:23] ID_LIKE="rhel fedora"
[2025-11-24 02:40:23] VERSION_ID="7"
[2025-11-24 02:40:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:40:23] ANSI_COLOR="0;31"
[2025-11-24 02:40:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:40:23] HOME_URL="https://www.centos.org/"
[2025-11-24 02:40:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:40:23] 
[2025-11-24 02:40:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:40:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:40:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:40:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:40:23] 
[2025-11-24 02:40:23] 2025-11-24 01:24:42,835 | INFO     | ***************************************
[2025-11-24 02:40:23] 2025-11-24 01:24:43,340 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-11-24 02:40:23] 2025-11-24 01:24:43,359 | INFO     | sufficient remaining disk space (678026018816 B)
[2025-11-24 02:40:23] 2025-11-24 01:24:43,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:40:23] 2025-11-24 01:24:43,360 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:40:23] 2025-11-24 01:24:43,360 | INFO     | update_server=False
[2025-11-24 02:40:23] 2025-11-24 01:24:43,360 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:40:23] 2025-11-24 01:24:43,405 | INFO     | all job control threads have been joined
[2025-11-24 02:40:23] 2025-11-24 01:24:43,647 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:40:23] 2025-11-24 01:24:43,647 | INFO     | aborting loop
[2025-11-24 02:40:23] 2025-11-24 01:24:43,856 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:40:23] 2025-11-24 01:24:44,126 | INFO     | all data control threads have been joined
[2025-11-24 02:40:23] 2025-11-24 01:24:44,365 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:44,390 | INFO     | all payload control threads have been joined
[2025-11-24 02:40:23] 2025-11-24 01:24:44,410 | INFO     | [job] control thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:44,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:44,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:40:23] 2025-11-24 01:24:44,652 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:44,771 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:45,132 | INFO     | [data] control thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:45,316 | INFO     | [job] validate thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:45,384 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:45,397 | INFO     | [payload] control thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:45,489 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:45,825 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:45,826 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:45,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:40:23] 2025-11-24 01:24:45,920 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:46,578 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:46,837 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:24:47,861 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:40:23] 2025-11-24 01:25:12,546 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:40:23] 2025-11-24 01:25:12,575 | INFO     | PID=441102 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 02:40:23] 2025-11-24 01:25:12,576 | INFO     | .. there are 6 such processes running
[2025-11-24 02:40:23] 2025-11-24 01:25:12,576 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:40:23] 2025-11-24 01:25:12,576 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:40:23] 2025-11-24 01:25:12,576 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:40:23] 2025-11-24 01:25:14,115 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22867475273536)>', '<ExcThread(monitor, started 22867238422272)>']
[2025-11-24 02:40:23] 2025-11-24 01:25:14,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:40:23] 2025-11-24 01:25:14,586 | INFO     | [monitor] control thread has ended
[2025-11-24 02:40:23] 2025-11-24 01:25:19,141 | INFO     | all workflow threads have been joined
[2025-11-24 02:40:23] 2025-11-24 01:25:19,141 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:40:23] 2025-11-24 01:25:19,142 | INFO     | traces error code: 0
[2025-11-24 02:40:23] 2025-11-24 01:25:19,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:40:23] 2025-11-24 01:25:19,385 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:40:23] 2025-11-24 01:25:19,415 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:40:23] 2025-11-24 01:25:19,435 [wrapper] pilotpid: 441102
[2025-11-24 02:40:23] 2025-11-24 01:25:19,446 [wrapper] Pilot exit status: 0
[2025-11-24 02:40:23] 2025-11-24 01:25:19,513 [wrapper] pandaids: 6892526467
[2025-11-24 02:40:23] 2025-11-24 01:25:19,629 [wrapper] cleanup supervisor_pilot 1340929 441103
[2025-11-24 02:40:23] 2025-11-24 01:25:19,633 [wrapper] Test setup, not cleaning
[2025-11-24 02:40:23] 2025-11-24 01:25:19,636 [wrapper] apfmon messages muted
[2025-11-24 02:40:23] 2025-11-24 01:25:19,638 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:40:23] 2025-11-24 01:25:19,641 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:40:23]  *** Error codes and diagnostics ***
[2025-11-24 02:40:23]     "exeErrorCode": 0,
[2025-11-24 02:40:23]     "exeErrorDiag": "",
[2025-11-24 02:40:23]     "pilotErrorCode": 0,
[2025-11-24 02:40:23]     "pilotErrorDiag": "",
[2025-11-24 02:40:23]  *** Listing of results directory ***
[2025-11-24 02:40:23] total 1318556
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-24 02:40:23] -rwx------ 1 boinc boinc     36292 Nov 19 08:10 runpilot2-wrapper.sh
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:10 queuedata.json
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc       100 Nov 23 09:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:40:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 09:43 run_atlas
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc       105 Nov 23 09:43 job.xml
[2025-11-24 02:40:23] -rw-r--r-- 2 boinc boinc 407569707 Nov 23 09:43 EVNT.47493027._000107.pool.root.1
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc      6636 Nov 23 09:43 init_data.xml
[2025-11-24 02:40:23] drwxrwx--x 2 boinc boinc      4096 Nov 23 09:43 shared
[2025-11-24 02:40:23] -rw-r--r-- 2 boinc boinc    590102 Nov 23 09:43 input.tar.gz
[2025-11-24 02:40:23] -rw-r--r-- 2 boinc boinc     15120 Nov 23 09:43 start_atlas.sh
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc         0 Nov 23 09:43 boinc_lockfile
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc      2773 Nov 23 09:43 pandaJob.out
[2025-11-24 02:40:23] -rw------- 1 boinc boinc    989784 Nov 23 09:43 agis_schedconf.cvmfs.json
[2025-11-24 02:40:23] drwx------ 5 boinc boinc      4096 Nov 23 09:43 pilot3
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc       532 Nov 24 02:15 boinc_task_state.xml
[2025-11-24 02:40:23] -rw------- 1 boinc boinc 918533053 Nov 24 02:23 HITS.47493029._001026.pool.root.1
[2025-11-24 02:40:23] -rw------- 1 boinc boinc      1046 Nov 24 02:24 memory_monitor_summary.json
[2025-11-24 02:40:23] -rw------- 1 boinc boinc   1526164 Nov 24 02:24 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:40:23] -rw------- 1 boinc boinc        95 Nov 24 02:24 pilot_heartbeat.json
[2025-11-24 02:40:23] -rw------- 1 boinc boinc   1722913 Nov 24 02:24 log.47493029._001026.job.log.tgz.1
[2025-11-24 02:40:23] -rw------- 1 boinc boinc      8629 Nov 24 02:24 heartbeat.json
[2025-11-24 02:40:23] -rw------- 1 boinc boinc      4832 Nov 24 02:25 pilotlog.txt
[2025-11-24 02:40:23] -rw------- 1 boinc boinc   8361189 Nov 24 02:25 log.47493029._001026.job.log.1
[2025-11-24 02:40:23] -rw------- 1 boinc boinc       353 Nov 24 02:25 output.list
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc       620 Nov 24 02:25 runtime_log
[2025-11-24 02:40:23] -rw------- 1 boinc boinc  10106880 Nov 24 02:25 result.tar.gz
[2025-11-24 02:40:23] -rw------- 1 boinc boinc       671 Nov 24 02:25 yGqNDmQVrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlvFKDmwvsUum.diag
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc      9070 Nov 24 02:25 runtime_log.err
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc        28 Nov 24 02:40 wrapper_checkpoint.txt
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc      8192 Nov 24 02:40 boinc_mmap_file
[2025-11-24 02:40:23] -rw-r--r-- 1 boinc boinc     21094 Nov 24 02:40 stderr.txt
[2025-11-24 02:40:23] HITS file was successfully produced:
[2025-11-24 02:40:23] -rw------- 1 boinc boinc 918533053 Nov 24 02:23 shared/HITS.pool.root.1
[2025-11-24 02:40:23]  *** Contents of shared directory: ***
[2025-11-24 02:40:23] total 1305504
[2025-11-24 02:40:23] -rw-r--r-- 2 boinc boinc 407569707 Nov 23 09:43 ATLAS.root_0
[2025-11-24 02:40:23] -rw-r--r-- 2 boinc boinc    590102 Nov 23 09:43 input.tar.gz
[2025-11-24 02:40:23] -rw-r--r-- 2 boinc boinc     15120 Nov 23 09:43 start_atlas.sh
[2025-11-24 02:40:23] -rw------- 1 boinc boinc 918533053 Nov 24 02:23 HITS.pool.root.1
[2025-11-24 02:40:23] -rw------- 1 boinc boinc  10106880 Nov 24 02:25 result.tar.gz
02:40:25 (437309): run_atlas exited; CPU time 235442.326571
02:40:25 (437309): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN