Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:51:05 (15161): wrapper (7.7.26015): starting
13:51:05 (15161): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 13:51:05] Arguments: --nthreads 8
[2025-11-22 13:51:05] Threads: 8
[2025-11-22 13:51:05] Checking for CVMFS
[2025-11-22 13:51:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:51:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:51:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:51:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:51:07] 2.11.2.0 2946 279566 143236 153172 0 233 20917765 25165825 4028 130560 2 132973335 99.889 74641968 3052 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 13:51:07] CVMFS is ok
[2025-11-22 13:51:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:51:07] Checking for apptainer binary...
[2025-11-22 13:51:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 13:51:07] Running /usr/bin/apptainer --version
[2025-11-22 13:51:07] apptainer version 1.3.2-1.el7
[2025-11-22 13:51:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:51:10] cg-vwn485.simple-grid.lan
[2025-11-22 13:51:10] apptainer works
[2025-11-22 13:51:10] Set ATHENA_PROC_NUMBER=8
[2025-11-22 13:51:10] Set ATHENA_CORE_NUMBER=8
[2025-11-22 13:51:10] Starting ATLAS job with PandaID=6892548727
[2025-11-22 13:51:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 12:48:01]  *** The last 200 lines of the pilot log: ***
[2025-11-23 12:48:01] 2025-11-23 11:47:04,234 | INFO     | time since job start (82414s) is within the limit (172800.0s)
[2025-11-23 12:48:01] 2025-11-23 11:47:05,779 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 12:48:01] 2025-11-23 11:47:05,780 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-23 12:48:01] 2025-11-23 11:47:05,785 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6892548727/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 12:48:01] 2025-11-23 11:47:05,786 | INFO     | extracted standard info from prmon json
[2025-11-23 12:48:01] 2025-11-23 11:47:05,786 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 12:48:01] 2025-11-23 11:47:05,786 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 12:48:01] 2025-11-23 11:47:05,815 | INFO     | fitting pss+swap vs Time
[2025-11-23 12:48:01] 2025-11-23 11:47:05,821 | INFO     | sum of square deviations: 749438608200.7383
[2025-11-23 12:48:01] 2025-11-23 11:47:05,867 | INFO     | sum of deviations: 3515335791400.997
[2025-11-23 12:48:01] 2025-11-23 11:47:05,868 | INFO     | mean x: 1763857424.7600596
[2025-11-23 12:48:01] 2025-11-23 11:47:05,868 | INFO     | mean y: 2856433.555886736
[2025-11-23 12:48:01] 2025-11-23 11:47:05,868 | INFO     | intersect: -8270738052.153612
[2025-11-23 12:48:01] 2025-11-23 11:47:05,869 | INFO     | chi2: 15.074731338469444
[2025-11-23 12:48:01] 2025-11-23 11:47:05,871 | INFO     | sum of square deviations: 741093562820.2703
[2025-11-23 12:48:01] 2025-11-23 11:47:05,917 | INFO     | sum of deviations: 3943148040821.1587
[2025-11-23 12:48:01] 2025-11-23 11:47:05,918 | INFO     | mean x: 1763857272.264772
[2025-11-23 12:48:01] 2025-11-23 11:47:05,918 | INFO     | mean y: 2864252.2961854897
[2025-11-23 12:48:01] 2025-11-23 11:47:05,918 | INFO     | intersect: -9382118557.365257
[2025-11-23 12:48:01] 2025-11-23 11:47:05,920 | INFO     | chi2: 12.185878357895588
[2025-11-23 12:48:01] 2025-11-23 11:47:05,920 | INFO     | current chi2=12.185878357895588 (change=19.16354537743401 %)
[2025-11-23 12:48:01] 2025-11-23 11:47:05,920 | INFO     | right removable region: 1336
[2025-11-23 12:48:01] 2025-11-23 11:47:05,922 | INFO     | sum of square deviations: 741092531310.2701
[2025-11-23 12:48:01] 2025-11-23 11:47:05,967 | INFO     | sum of deviations: 2975838066929.997
[2025-11-23 12:48:01] 2025-11-23 11:47:05,968 | INFO     | mean x: 1763857577.264772
[2025-11-23 12:48:01] 2025-11-23 11:47:05,968 | INFO     | mean y: 2866290.316379955
[2025-11-23 12:48:01] 2025-11-23 11:47:05,968 | INFO     | intersect: -7079858607.460075
[2025-11-23 12:48:01] 2025-11-23 11:47:05,969 | INFO     | chi2: 10.802448121185359
[2025-11-23 12:48:01] 2025-11-23 11:47:05,969 | INFO     | current chi2=10.802448121185359 (change=28.340692257523546 %)
[2025-11-23 12:48:01] 2025-11-23 11:47:05,971 | INFO     | sum of square deviations: 732808641632.2417
[2025-11-23 12:48:01] 2025-11-23 11:47:06,017 | INFO     | sum of deviations: 2531318665839.191
[2025-11-23 12:48:01] 2025-11-23 11:47:06,017 | INFO     | mean x: 1763857729.7695196
[2025-11-23 12:48:01] 2025-11-23 11:47:06,017 | INFO     | mean y: 2874473.896396396
[2025-11-23 12:48:01] 2025-11-23 11:47:06,017 | INFO     | intersect: -6089965786.973531
[2025-11-23 12:48:01] 2025-11-23 11:47:06,019 | INFO     | chi2: 8.032370431220139
[2025-11-23 12:48:01] 2025-11-23 11:47:06,019 | INFO     | current chi2=8.032370431220139 (change=25.64305478618913 %)
[2025-11-23 12:48:01] 2025-11-23 11:47:06,021 | INFO     | sum of square deviations: 724587031128.3367
[2025-11-23 12:48:01] 2025-11-23 11:47:06,063 | INFO     | sum of deviations: 2334292603278.143
[2025-11-23 12:48:01] 2025-11-23 11:47:06,063 | INFO     | mean x: 1763857882.2712886
[2025-11-23 12:48:01] 2025-11-23 11:47:06,063 | INFO     | mean y: 2878124.8357196683
[2025-11-23 12:48:01] 2025-11-23 11:47:06,063 | INFO     | intersect: -5679476417.734701
[2025-11-23 12:48:01] 2025-11-23 11:47:06,065 | INFO     | chi2: 7.408430306127438
[2025-11-23 12:48:01] 2025-11-23 11:47:06,065 | INFO     | current chi2=7.408430306127438 (change=7.767820600847496 %)
[2025-11-23 12:48:01] 2025-11-23 11:47:06,065 | INFO     | left removable region: 30
[2025-11-23 12:48:01] 2025-11-23 11:47:06,067 | INFO     | sum of square deviations: 690729134131.2657
[2025-11-23 12:48:01] 2025-11-23 11:47:06,113 | INFO     | sum of deviations: 2591719788153.878
[2025-11-23 12:48:01] 2025-11-23 11:47:06,117 | INFO     | mean x: 1763858156.7756507
[2025-11-23 12:48:01] 2025-11-23 11:47:06,117 | INFO     | mean y: 2893518.5558958654
[2025-11-23 12:48:01] 2025-11-23 11:47:06,117 | INFO     | intersect: -6615368058.265515
[2025-11-23 12:48:01] 2025-11-23 11:47:06,119 | INFO     | chi2: 3.3547287100411776
[2025-11-23 12:48:01] 2025-11-23 11:47:06,119 | INFO     | current memory leak: 3.75 B/s (using 1306 data points, chi2=3.35)
[2025-11-23 12:48:01] 2025-11-23 11:47:06,121 | INFO     | could have reported an average CPU frequency of 2249 MHz (46 samples)
[2025-11-23 12:48:01] 2025-11-23 11:47:06,121 | INFO     | ..............................
[2025-11-23 12:48:01] 2025-11-23 11:47:06,122 | INFO     | . Timing measurements:
[2025-11-23 12:48:01] 2025-11-23 11:47:06,122 | INFO     | . get job = 0 s
[2025-11-23 12:48:01] 2025-11-23 11:47:06,122 | INFO     | . initial setup = 8 s
[2025-11-23 12:48:01] 2025-11-23 11:47:06,122 | INFO     | . payload setup = 157 s
[2025-11-23 12:48:01] 2025-11-23 11:47:06,122 | INFO     | . stage-in = 0 s
[2025-11-23 12:48:01] 2025-11-23 11:47:06,122 | INFO     | . payload execution = 82009 s
[2025-11-23 12:48:01] 2025-11-23 11:47:06,122 | INFO     | . stage-out = 4 s
[2025-11-23 12:48:01] 2025-11-23 11:47:06,122 | INFO     | . log creation = 1 s
[2025-11-23 12:48:01] 2025-11-23 11:47:06,122 | INFO     | ..............................
[2025-11-23 12:48:01] 2025-11-23 11:47:06,247 | INFO     | time since job start (82416s) is within the limit (172800.0s)
[2025-11-23 12:48:01] 2025-11-23 11:47:06,431 | INFO     | 
[2025-11-23 12:48:01] 2025-11-23 11:47:06,432 | INFO     | job summary report
[2025-11-23 12:48:01] 2025-11-23 11:47:06,432 | INFO     | --------------------------------------------------
[2025-11-23 12:48:01] 2025-11-23 11:47:06,432 | INFO     | PanDA job id: 6892548727
[2025-11-23 12:48:01] 2025-11-23 11:47:06,432 | INFO     | task id: 47493029
[2025-11-23 12:48:01] 2025-11-23 11:47:06,432 | INFO     | errors: (none)
[2025-11-23 12:48:01] 2025-11-23 11:47:06,432 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 12:48:01] 2025-11-23 11:47:06,432 | INFO     | pilot state: finished 
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | transexitcode: 0
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | exeerrorcode: 0
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | exeerrordiag: 
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | exitcode: 0
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | exitmsg: OK
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | cpuconsumptiontime: 302358 s
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | nevents: 1000
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | neventsw: 0
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | pid: 25531
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | pgrp: 25531
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | corecount: 8
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | event service: False
[2025-11-23 12:48:01] 2025-11-23 11:47:06,433 | INFO     | sizes: {0: 2297962, 1: 2298648, 2: 2298847, 13: 2298847, 23: 2298903, 34: 2298931, 45: 2299087, 56: 2299115, 66: 2299143, 77: 2299171, 88: 2299227, 95: 2299797, 99
[2025-11-23 12:48:01] 2025-11-23 11:47:06,434 | INFO     | --------------------------------------------------
[2025-11-23 12:48:01] 2025-11-23 11:47:06,434 | INFO     | 
[2025-11-23 12:48:01] 2025-11-23 11:47:06,434 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-23 12:48:01] 2025-11-23 11:47:06,881 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,881 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,881 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,882 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,883 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,883 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,883 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,883 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 12:48:01] 2025-11-23 11:47:06,883 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,883 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 12:48:01] 2025-11-23 11:47:06,883 | INFO     | job 6892548727 has completed (purged errors)
[2025-11-23 12:48:01] 2025-11-23 11:47:06,883 | INFO     | overall cleanup function is called
[2025-11-23 12:48:01] 2025-11-23 11:47:07,904 | INFO     | --- collectZombieJob: --- 10, [25531]
[2025-11-23 12:48:01] 2025-11-23 11:47:07,905 | INFO     | zombie collector waiting for pid 25531
[2025-11-23 12:48:01] 2025-11-23 11:47:07,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 12:48:01] 2025-11-23 11:47:07,905 | INFO     | collected zombie processes
[2025-11-23 12:48:01] 2025-11-23 11:47:07,905 | INFO     | will attempt to kill all subprocesses of pid=25531
[2025-11-23 12:48:01] 2025-11-23 11:47:08,025 | INFO     | process IDs to be killed: [25531] (in reverse order)
[2025-11-23 12:48:01] 2025-11-23 11:47:08,866 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 12:48:01] 2025-11-23 11:47:08,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 12:48:01] 2025-11-23 11:47:08,870 | INFO     | did not find any defunct processes belonging to 25531
[2025-11-23 12:48:01] 2025-11-23 11:47:08,873 | INFO     | did not find any defunct processes belonging to 25531
[2025-11-23 12:48:01] 2025-11-23 11:47:08,883 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 12:48:01] 2025-11-23 11:47:08,883 | INFO     | ready for new job
[2025-11-23 12:48:01] 2025-11-23 11:47:08,883 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 12:48:01] 2025-11-23 11:47:08,889 | INFO     | ***************************************
[2025-11-23 12:48:01] 2025-11-23 11:47:08,889 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 12:48:01] 2025-11-23 11:47:08,889 | INFO     | ***************************************
[2025-11-23 12:48:01] 2025-11-23 11:47:08,889 | INFO     | 
[2025-11-23 12:48:01] 2025-11-23 11:47:08,890 | INFO     | pilot is running in a VM
[2025-11-23 12:48:01] 2025-11-23 11:47:08,890 | INFO     | architecture information:
[2025-11-23 12:48:01] 2025-11-23 11:47:08,894 | INFO     | executing command: cat /etc/os-release
[2025-11-23 12:48:01] 2025-11-23 11:47:09,038 | INFO     | cat /etc/os-release:
[2025-11-23 12:48:01] NAME="CentOS Linux"
[2025-11-23 12:48:01] VERSION="7 (Core)"
[2025-11-23 12:48:01] ID="centos"
[2025-11-23 12:48:01] ID_LIKE="rhel fedora"
[2025-11-23 12:48:01] VERSION_ID="7"
[2025-11-23 12:48:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 12:48:01] ANSI_COLOR="0;31"
[2025-11-23 12:48:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 12:48:01] HOME_URL="https://www.centos.org/"
[2025-11-23 12:48:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 12:48:01] 
[2025-11-23 12:48:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 12:48:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 12:48:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 12:48:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 12:48:01] 
[2025-11-23 12:48:01] 2025-11-23 11:47:09,039 | INFO     | ***************************************
[2025-11-23 12:48:01] 2025-11-23 11:47:09,543 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-23 12:48:01] 2025-11-23 11:47:09,777 | INFO     | sufficient remaining disk space (493089718272 B)
[2025-11-23 12:48:01] 2025-11-23 11:47:09,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 12:48:01] 2025-11-23 11:47:09,778 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 12:48:01] 2025-11-23 11:47:09,778 | INFO     | update_server=False
[2025-11-23 12:48:01] 2025-11-23 11:47:09,778 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 12:48:01] 2025-11-23 11:47:09,779 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 12:48:01] 2025-11-23 11:47:09,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:48:01] 2025-11-23 11:47:09,781 | INFO     | aborting loop
[2025-11-23 12:48:01] 2025-11-23 11:47:09,975 | INFO     | all data control threads have been joined
[2025-11-23 12:48:01] 2025-11-23 11:47:10,230 | INFO     | all job control threads have been joined
[2025-11-23 12:48:01] 2025-11-23 11:47:10,583 | INFO     | all payload control threads have been joined
[2025-11-23 12:48:01] 2025-11-23 11:47:10,785 | INFO     | [job] retrieve thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:10,787 | INFO     | [job] job monitor thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:10,788 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:10,796 | INFO     | [payload] validate_post thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:10,908 | INFO     | [data] copytool_in thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:10,982 | INFO     | [data] control thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:11,237 | INFO     | [job] control thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:11,261 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:11,284 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:48:01] 2025-11-23 11:47:11,347 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:11,429 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:11,466 | INFO     | [job] validate thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:11,590 | INFO     | [payload] control thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:11,785 | INFO     | [data] copytool_out thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:12,290 | INFO     | [job] queue monitor thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:12,365 | INFO     | [payload] failed_post thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:12,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 12:48:01] 2025-11-23 11:47:16,760 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 12:48:01] 2025-11-23 11:47:39,442 | INFO     | PID=18942 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 12:48:01] 2025-11-23 11:47:39,442 | INFO     | .. there are 9 such processes running
[2025-11-23 12:48:01] 2025-11-23 11:47:39,442 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 12:48:01] 2025-11-23 11:47:39,442 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 12:48:01] 2025-11-23 11:47:39,442 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 12:48:01] 2025-11-23 11:47:54,195 | INFO     | [monitor] cgroup control has ended
[2025-11-23 12:48:01] 2025-11-23 11:47:55,101 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140644749670208)>', '<ExcThread(monitor, started 140644299286272)>']
[2025-11-23 12:48:01] 2025-11-23 11:47:55,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 12:48:01] 2025-11-23 11:47:55,537 | INFO     | [monitor] control thread has ended
[2025-11-23 12:48:01] 2025-11-23 11:48:00,127 | INFO     | all workflow threads have been joined
[2025-11-23 12:48:01] 2025-11-23 11:48:00,127 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 12:48:01] 2025-11-23 11:48:00,127 | INFO     | traces error code: 0
[2025-11-23 12:48:01] 2025-11-23 11:48:00,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 12:48:01] 2025-11-23 11:48:00,519 [wrapper] ==== pilot stdout END ====
[2025-11-23 12:48:01] 2025-11-23 11:48:00,563 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 12:48:01] 2025-11-23 11:48:00,592 [wrapper] pilotpid: 18942
[2025-11-23 12:48:01] 2025-11-23 11:48:00,615 [wrapper] Pilot exit status: 0
[2025-11-23 12:48:01] 2025-11-23 11:48:00,637 [wrapper] pandaids: 6892548727
[2025-11-23 12:48:01] 2025-11-23 11:48:00,676 [wrapper] cleanup supervisor_pilot  5411 18943
[2025-11-23 12:48:01] 2025-11-23 11:48:00,691 [wrapper] Test setup, not cleaning
[2025-11-23 12:48:01] 2025-11-23 11:48:00,696 [wrapper] apfmon messages muted
[2025-11-23 12:48:01] 2025-11-23 11:48:00,699 [wrapper] ==== wrapper stdout END ====
[2025-11-23 12:48:01] 2025-11-23 11:48:00,703 [wrapper] ==== wrapper stderr END ====
[2025-11-23 12:48:01]  *** Error codes and diagnostics ***
[2025-11-23 12:48:01]     "exeErrorCode": 0,
[2025-11-23 12:48:01]     "exeErrorDiag": "",
[2025-11-23 12:48:01]     "pilotErrorCode": 0,
[2025-11-23 12:48:01]     "pilotErrorDiag": "",
[2025-11-23 12:48:01]  *** Listing of results directory ***
[2025-11-23 12:48:01] total 1335020
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc    576529 Nov 19 09:32 pilot3.tar.gz
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc      5112 Nov 19 09:42 queuedata.json
[2025-11-23 12:48:01] -rwx------. 1 boinc boinc     36292 Nov 19 09:43 runpilot2-wrapper.sh
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc       100 Nov 22 13:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 12:48:01] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 13:51 run_atlas
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc       105 Nov 22 13:51 job.xml
[2025-11-23 12:48:01] -rw-r--r--. 2 boinc boinc 412618125 Nov 22 13:51 EVNT.47493027._000341.pool.root.1
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc      6393 Nov 22 13:51 init_data.xml
[2025-11-23 12:48:01] -rw-r--r--. 2 boinc boinc     15120 Nov 22 13:51 start_atlas.sh
[2025-11-23 12:48:01] drwxrwx--x. 2 boinc boinc        68 Nov 22 13:51 shared
[2025-11-23 12:48:01] -rw-r--r--. 2 boinc boinc    590105 Nov 22 13:51 input.tar.gz
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc         0 Nov 22 13:51 boinc_lockfile
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc      2770 Nov 22 13:51 pandaJob.out
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc    989768 Nov 22 13:53 agis_schedconf.cvmfs.json
[2025-11-23 12:48:01] drwx------. 5 boinc boinc      4096 Nov 22 13:53 pilot3
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc       533 Nov 23 12:30 boinc_task_state.xml
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc 923541074 Nov 23 12:45 HITS.47493029._003361.pool.root.1
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc      1031 Nov 23 12:46 memory_monitor_summary.json
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc   1526164 Nov 23 12:46 agis_ddmendpoints.agis.ALL.json
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc   2453016 Nov 23 12:46 log.47493029._003361.job.log.tgz.1
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc        95 Nov 23 12:46 pilot_heartbeat.json
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc      8623 Nov 23 12:47 heartbeat.json
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc      8192 Nov 23 12:47 boinc_mmap_file
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc        29 Nov 23 12:47 wrapper_checkpoint.txt
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc      4885 Nov 23 12:48 pilotlog.txt
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc  11046696 Nov 23 12:48 log.47493029._003361.job.log.1
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc       353 Nov 23 12:48 output.list
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc       620 Nov 23 12:48 runtime_log
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc  13516800 Nov 23 12:48 result.tar.gz
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc      8717 Nov 23 12:48 runtime_log.err
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc       662 Nov 23 12:48 IFGNDmRxsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmO8FKDmZMK0vn.diag
[2025-11-23 12:48:01] -rw-r--r--. 1 boinc boinc     20993 Nov 23 12:48 stderr.txt
[2025-11-23 12:48:01] HITS file was successfully produced:
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc 923541074 Nov 23 12:45 shared/HITS.pool.root.1
[2025-11-23 12:48:01]  *** Contents of shared directory: ***
[2025-11-23 12:48:01] total 1318640
[2025-11-23 12:48:01] -rw-r--r--. 2 boinc boinc 412618125 Nov 22 13:51 ATLAS.root_0
[2025-11-23 12:48:01] -rw-r--r--. 2 boinc boinc     15120 Nov 22 13:51 start_atlas.sh
[2025-11-23 12:48:01] -rw-r--r--. 2 boinc boinc    590105 Nov 22 13:51 input.tar.gz
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc 923541074 Nov 23 12:45 HITS.pool.root.1
[2025-11-23 12:48:01] -rw-------. 1 boinc boinc  13516800 Nov 23 12:48 result.tar.gz
12:48:03 (15161): run_atlas exited; CPU time 302812.903049
12:48:03 (15161): called boinc_finish(0)

</stderr_txt>
]]>

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