Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 17:13:25 (10304): vboxwrapper version 26210
2025-11-23 17:13:25 (10304): BOINC client version: 8.0.2
2025-11-23 17:13:25 (10304): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-11-23 17:13:26 (10304): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 17:13:26 (10304): Create VM. (boinc_6753543f4003c9e3, slot#8)
2025-11-23 17:13:27 (10304): Setting Memory Size for VM. (4800MB)
2025-11-23 17:13:27 (10304): Setting CPU Count for VM. (8)
2025-11-23 17:13:27 (10304): Setting Chipset Options for VM.
2025-11-23 17:13:27 (10304): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 17:13:28 (10304): Setting Boot Options for VM.
2025-11-23 17:13:28 (10304): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 17:13:28 (10304): Enabling VM Network Access.
2025-11-23 17:13:29 (10304): Disabling USB Support for VM.
2025-11-23 17:13:29 (10304): Disabling COM Port Support for VM.
2025-11-23 17:13:29 (10304): Disabling LPT Port Support for VM.
2025-11-23 17:13:29 (10304): Disabling Audio Support for VM.
2025-11-23 17:13:30 (10304): Disabling Clipboard Support for VM.
2025-11-23 17:13:30 (10304): Disabling Drag and Drop Support for VM.
2025-11-23 17:13:30 (10304): Adding storage controller(s) to VM.
2025-11-23 17:13:30 (10304): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 17:13:32 (10304): Adding VirtualBox Guest Additions to VM.
2025-11-23 17:13:33 (10304): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 17:13:33 (10304): forwarding host port 54390 to guest port 80
2025-11-23 17:13:33 (10304): Enabling remote desktop for VM.
2025-11-23 17:13:33 (10304): Required extension pack not installed, remote desktop not enabled.
2025-11-23 17:13:33 (10304): Enabling shared directory for VM.
2025-11-23 17:13:34 (10304): Starting VM using VBoxManage interface. (boinc_6753543f4003c9e3, slot#8)
2025-11-23 17:13:40 (10304): Successfully started VM. (PID = '7696')
2025-11-23 17:13:40 (10304): Reporting VM Process ID to BOINC.
2025-11-23 17:13:40 (10304): Guest Log: BIOS: VirtualBox 7.1.10
2025-11-23 17:13:40 (10304): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 17:13:40 (10304): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 17:13:40 (10304): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 17:13:40 (10304): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 17:13:40 (10304): Detected: Web Application Enabled (http://localhost:54390)
2025-11-23 17:13:40 (10304): Preference change detected
2025-11-23 17:13:40 (10304): Setting CPU throttle for VM. (100%)
2025-11-23 17:13:40 (10304): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 17:13:42 (10304): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 17:13:42 (10304): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 17:13:44 (10304): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 17:13:44 (10304): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 17:13:44 (10304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 17:13:54 (10304): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 17:13:54 (10304): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-23 17:13:59 (10304): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 17:13:59 (10304): Guest Log: 00:00:00.000149 main     Log opened 2025-11-23T17:13:57.389155000Z
2025-11-23 17:13:59 (10304): Guest Log: 00:00:00.000255 main     OS Product: Linux
2025-11-23 17:13:59 (10304): Guest Log: 00:00:00.000285 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 17:13:59 (10304): Guest Log: 00:00:00.000307 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 17:13:59 (10304): Guest Log: 00:00:00.000331 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 17:13:59 (10304): Guest Log: 00:00:00.000332 main     Process ID: 1378
2025-11-23 17:13:59 (10304): Guest Log: 00:00:00.000332 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 17:13:59 (10304): Guest Log: 00:00:00.001304 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 17:13:59 (10304): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 17:13:59 (10304): Guest Log: [INFO] Mounting shared directory
2025-11-23 17:13:59 (10304): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 17:14:09 (10304): Guest Log: 00:00:10.003331 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 811 400 415 000ns (GuestNow=1 763 946 848 792 352 000 ns GuestLast=1 763 918 037 391 937 000 ns fSetTimeLastLoop=true )
2025-11-23 17:14:54 (10304): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 17:14:54 (10304): Guest Log: [INFO] Detected branch: prod
2025-11-23 17:14:54 (10304): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 17:14:54 (10304): Guest Log: Copying input files
2025-11-23 17:14:56 (10304): Guest Log: Copied input files into RunAtlas.
2025-11-23 17:14:56 (10304): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 17:14:56 (10304): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 17:14:56 (10304): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 17:14:56 (10304): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 17:15:04 (10304): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 17:15:04 (10304): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 17:15:04 (10304): Guest Log: 2.6.3.0 1687 0 32184 153227 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 17:15:05 (10304): Guest Log: copied the webapp to /var/www
2025-11-23 17:15:05 (10304): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-23 17:15:05 (10304): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-23 17:15:05 (10304): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 17:15:05 (10304): Guest Log:  *** Starting ATLAS job. (PandaID=6892546741 taskID=47493029) ***
2025-11-23 18:53:54 (10304): Status Report: Elapsed Time: '6000.000000'
2025-11-23 18:53:54 (10304): Status Report: CPU Time: '42261.421875'
2025-11-23 20:34:09 (10304): Status Report: Elapsed Time: '12000.000000'
2025-11-23 20:34:09 (10304): Status Report: CPU Time: '87325.843750'
2025-11-23 22:14:25 (10304): Status Report: Elapsed Time: '18000.000000'
2025-11-23 22:14:25 (10304): Status Report: CPU Time: '132402.671875'
2025-11-23 23:54:40 (10304): Status Report: Elapsed Time: '24000.000000'
2025-11-23 23:54:40 (10304): Status Report: CPU Time: '177501.093750'
2025-11-24 01:34:54 (10304): Status Report: Elapsed Time: '30000.000000'
2025-11-24 01:34:54 (10304): Status Report: CPU Time: '222578.656250'
2025-11-24 03:15:13 (10304): Status Report: Elapsed Time: '36000.000000'
2025-11-24 03:15:13 (10304): Status Report: CPU Time: '267690.015625'
2025-11-24 04:55:28 (10304): Status Report: Elapsed Time: '42000.000000'
2025-11-24 04:55:28 (10304): Status Report: CPU Time: '312868.093750'
2025-11-24 06:35:43 (10304): Status Report: Elapsed Time: '48000.000000'
2025-11-24 06:35:43 (10304): Status Report: CPU Time: '356043.468750'
2025-11-24 06:38:41 (10304): Guest Log:  *** Job finished ***
2025-11-24 06:38:41 (10304): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:24,685 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:24,686 | INFO     | traces error code: 0
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:24,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,402 | INFO     | PID=6116 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,403 | INFO     | found 0 job(s) in 20 queues
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,403 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,404 | CRITICAL | thread 'MainThread' is not alive
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,404 | INFO     | [monitor] control thread has ended
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,516 [wrapper] ==== pilot stdout END ====
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,520 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,524 [wrapper] pilotpid: 6116
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,528 [wrapper] Pilot exit status: 0
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,545 [wrapper] pandaids: 6892546741
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,572 [wrapper] cleanup supervisor_pilot  1131 6117
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,577 [wrapper] Test setup, not cleaning
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,584 [wrapper] apfmon messages muted
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,589 [wrapper] ==== wrapper stdout END ====
2025-11-24 06:38:41 (10304): Guest Log: 2025-11-24 14:38:40,593 [wrapper] ==== wrapper stderr END ====
2025-11-24 06:38:41 (10304): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 06:38:41 (10304): Guest Log:     "exeErrorCode": 0,
2025-11-24 06:38:41 (10304): Guest Log:     "exeErrorDiag": "",
2025-11-24 06:38:41 (10304): Guest Log:     "pilotErrorCode": 0,
2025-11-24 06:38:41 (10304): Guest Log:     "pilotErrorDiag": "",
2025-11-24 06:38:41 (10304): Guest Log:  *** Listing of results directory ***
2025-11-24 06:38:41 (10304): Guest Log: total 922436
2025-11-24 06:38:41 (10304): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 19 08:16 pilot3.tar.gz
2025-11-24 06:38:41 (10304): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 19 08:24 queuedata.json
2025-11-24 06:38:41 (10304): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 19 08:26 runpilot2-wrapper.sh
2025-11-24 06:38:41 (10304): Guest Log: -rwxr-xr-x. 1 atlas atlas      9129 Nov 24 01:14 init_data.xml
2025-11-24 06:38:41 (10304): Guest Log: -rwxr-xr-x. 1 atlas atlas    590100 Nov 24 01:14 input.tar.gz
2025-11-24 06:38:41 (10304): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 24 01:14 start_atlas.sh
2025-11-24 06:38:41 (10304): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 01:14 EVNT.47493027._000304.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 06:38:41 (10304): Guest Log: -rw-r--r--. 1 atlas atlas      2772 Nov 24 01:15 pandaJob.out
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas    989786 Nov 24 01:15 agis_schedconf.cvmfs.json
2025-11-24 06:38:41 (10304): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 01:15 pilot3
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas 924280198 Nov 24 14:37 HITS.47493029._002998.pool.root.1
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas      1042 Nov 24 14:37 memory_monitor_summary.json
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 24 14:37 agis_ddmendpoints.agis.ALL.json
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas   1999509 Nov 24 14:37 log.47493029._002998.job.log.tgz.1
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas      8626 Nov 24 14:38 heartbeat.json
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas        95 Nov 24 14:38 pilot_heartbeat.json
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas       814 Nov 24 14:38 pilotlog.txt
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas   6226854 Nov 24 14:38 log.47493029._002998.job.log.1
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 14:38 output.list
2025-11-24 06:38:41 (10304): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 14:38 runtime_log
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas   8243200 Nov 24 14:38 result.tar.gz
2025-11-24 06:38:41 (10304): Guest Log: -rw-r--r--. 1 atlas atlas      8648 Nov 24 14:38 runtime_log.err
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas       670 Nov 24 14:38 fwdKDmHhsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmm1GKDmKcbT4m.diag
2025-11-24 06:38:41 (10304): Guest Log: Looking for outputfile HITS.47493029._002998.pool.root.1
2025-11-24 06:38:41 (10304): Guest Log: HITS file was successfully produced
2025-11-24 06:38:41 (10304): Guest Log: -rw-------. 1 atlas atlas 924280198 Nov 24 14:37 /home/atlas/RunAtlas/HITS.47493029._002998.pool.root.1
2025-11-24 06:38:45 (10304): Guest Log: Successfully finished the ATLAS job!
2025-11-24 06:38:45 (10304): Guest Log: Copying the results back to the shared directory!
2025-11-24 06:38:45 (10304): Guest Log:  *** Contents of shared directory: ***
2025-11-24 06:38:45 (10304): Guest Log: total 1311980
2025-11-24 06:38:45 (10304): Guest Log: -rwxrwxrwx. 1 root root 410313556 Nov 24 01:13 ATLAS.root_0
2025-11-24 06:38:45 (10304): Guest Log: -rwxrwxrwx. 1 root root 924280198 Nov 24 14:38 HITS.pool.root.1
2025-11-24 06:38:45 (10304): Guest Log: -rwxrwxrwx. 1 root root      9129 Nov 24 01:13 init_data.xml
2025-11-24 06:38:45 (10304): Guest Log: -rwxrwxrwx. 1 root root    590100 Nov 19 15:48 input.tar.gz
2025-11-24 06:38:45 (10304): Guest Log: -rwxrwxrwx. 1 root root   8243200 Nov 24 14:38 result.tar.gz
2025-11-24 06:38:45 (10304): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 15:48 start_atlas.sh
2025-11-24 06:38:45 (10304): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 06:38:45 (10304): VM Completion File Detected.
2025-11-24 06:38:45 (10304): Powering off VM.
2025-11-24 06:38:46 (10304): Successfully stopped VM.
2025-11-24 06:38:46 (10304): Deregistering VM. (boinc_6753543f4003c9e3, slot#8)
2025-11-24 06:38:46 (10304): Removing network bandwidth throttle group from VM.
2025-11-24 06:38:46 (10304): Removing VM from VirtualBox.
2025-11-24 06:38:52 (10304): called boinc_finish(0)

</stderr_txt>
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