Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 20:04:24 (12764): vboxwrapper version 26210
2025-11-24 20:04:24 (12764): BOINC client version: 8.0.2
2025-11-24 20:04:25 (12764): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-11-24 20:04:25 (12764): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 20:04:25 (12764): Create VM. (boinc_72d5fd1485747d7f, slot#8)
2025-11-24 20:04:26 (12764): Setting Memory Size for VM. (4800MB)
2025-11-24 20:04:26 (12764): Setting CPU Count for VM. (8)
2025-11-24 20:04:27 (12764): Setting Chipset Options for VM.
2025-11-24 20:04:27 (12764): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 20:04:27 (12764): Setting Boot Options for VM.
2025-11-24 20:04:28 (12764): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 20:04:28 (12764): Enabling VM Network Access.
2025-11-24 20:04:28 (12764): Disabling USB Support for VM.
2025-11-24 20:04:28 (12764): Disabling COM Port Support for VM.
2025-11-24 20:04:29 (12764): Disabling LPT Port Support for VM.
2025-11-24 20:04:29 (12764): Disabling Audio Support for VM.
2025-11-24 20:04:29 (12764): Disabling Clipboard Support for VM.
2025-11-24 20:04:29 (12764): Disabling Drag and Drop Support for VM.
2025-11-24 20:04:30 (12764): Adding storage controller(s) to VM.
2025-11-24 20:04:30 (12764): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 20:04:32 (12764): Adding VirtualBox Guest Additions to VM.
2025-11-24 20:04:32 (12764): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 20:04:32 (12764): forwarding host port 57987 to guest port 80
2025-11-24 20:04:33 (12764): Enabling remote desktop for VM.
2025-11-24 20:04:33 (12764): Required extension pack not installed, remote desktop not enabled.
2025-11-24 20:04:33 (12764): Enabling shared directory for VM.
2025-11-24 20:04:33 (12764): Starting VM using VBoxManage interface. (boinc_72d5fd1485747d7f, slot#8)
2025-11-24 20:04:39 (12764): Successfully started VM. (PID = '2280')
2025-11-24 20:04:39 (12764): Reporting VM Process ID to BOINC.
2025-11-24 20:04:39 (12764): Guest Log: BIOS: VirtualBox 7.1.10
2025-11-24 20:04:39 (12764): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 20:04:39 (12764): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 20:04:39 (12764): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 20:04:39 (12764): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 20:04:39 (12764): Detected: Web Application Enabled (http://localhost:57987)
2025-11-24 20:04:39 (12764): Preference change detected
2025-11-24 20:04:39 (12764): Setting CPU throttle for VM. (100%)
2025-11-24 20:04:39 (12764): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 20:04:41 (12764): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 20:04:41 (12764): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 20:04:43 (12764): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 20:04:43 (12764): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 20:04:43 (12764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 20:04:49 (12764): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 20:04:49 (12764): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 20:04:55 (12764): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 20:04:55 (12764): Guest Log: 00:00:00.000142 main     Log opened 2025-11-24T20:04:52.717537000Z
2025-11-24 20:04:55 (12764): Guest Log: 00:00:00.000237 main     OS Product: Linux
2025-11-24 20:04:55 (12764): Guest Log: 00:00:00.000284 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 20:04:55 (12764): Guest Log: 00:00:00.000307 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 20:04:55 (12764): Guest Log: 00:00:00.000375 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 20:04:55 (12764): Guest Log: 00:00:00.000376 main     Process ID: 1377
2025-11-24 20:04:55 (12764): Guest Log: 00:00:00.000377 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 20:04:55 (12764): Guest Log: 00:00:00.001202 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 20:04:55 (12764): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 20:04:55 (12764): Guest Log: [INFO] Mounting shared directory
2025-11-24 20:04:55 (12764): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 20:04:59 (12764): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 20:04:59 (12764): Guest Log: [INFO] Detected branch: prod
2025-11-24 20:05:00 (12764): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 20:05:00 (12764): Guest Log: Copying input files
2025-11-24 20:05:01 (12764): Guest Log: Copied input files into RunAtlas.
2025-11-24 20:05:01 (12764): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 20:05:01 (12764): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 20:05:01 (12764): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 20:05:01 (12764): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 20:05:05 (12764): Guest Log: 00:00:10.038246 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 811 969 979 000ns (GuestNow=1 764 043 504 689 781 000 ns GuestLast=1 764 014 692 719 802 000 ns fSetTimeLastLoop=true )
2025-11-24 20:06:00 (12764): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 20:06:01 (12764): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 20:06:01 (12764): Guest Log: 2.6.3.0 1657 1 30148 153268 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 20:06:01 (12764): Guest Log: copied the webapp to /var/www
2025-11-24 20:06:02 (12764): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-24 20:06:02 (12764): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-24 20:06:02 (12764): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 20:06:02 (12764): Guest Log:  *** Starting ATLAS job. (PandaID=6892547897 taskID=47493029) ***
2025-11-24 21:44:55 (12764): Status Report: Elapsed Time: '6000.000000'
2025-11-24 21:44:56 (12764): Status Report: CPU Time: '42210.421875'
2025-11-24 23:25:12 (12764): Status Report: Elapsed Time: '12000.000000'
2025-11-24 23:25:12 (12764): Status Report: CPU Time: '87241.484375'
2025-11-25 01:05:28 (12764): Status Report: Elapsed Time: '18000.000000'
2025-11-25 01:05:28 (12764): Status Report: CPU Time: '132274.062500'
2025-11-25 02:45:45 (12764): Status Report: Elapsed Time: '24000.000000'
2025-11-25 02:45:45 (12764): Status Report: CPU Time: '177363.343750'
2025-11-25 04:26:09 (12764): Status Report: Elapsed Time: '30000.628380'
2025-11-25 04:26:09 (12764): Status Report: CPU Time: '222390.515625'
2025-11-25 06:06:26 (12764): Status Report: Elapsed Time: '36000.628380'
2025-11-25 06:06:26 (12764): Status Report: CPU Time: '267447.718750'
2025-11-25 07:46:43 (12764): Status Report: Elapsed Time: '42000.628380'
2025-11-25 07:46:43 (12764): Status Report: CPU Time: '312517.515625'
2025-11-25 09:12:26 (12764): Guest Log:  *** Job finished ***
2025-11-25 09:12:26 (12764): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:11:43,187 | INFO     | [data] copytool_out thread has finished
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:11:44,343 | INFO     | [data] queue_monitor thread has finished
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:18,567 | INFO     | [monitor] cgroup control has ended
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:19,797 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783928031040)>', '<ExcThread(monitor, started 139783619712768)>']
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:19,830 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:19,830 | INFO     | [monitor] control thread has ended
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:24,824 | INFO     | all workflow threads have been joined
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:24,825 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:24,825 | INFO     | traces error code: 0
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:24,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:24,963 [wrapper] ==== pilot stdout END ====
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:24,967 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:24,972 [wrapper] pilotpid: 6100
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:24,976 [wrapper] Pilot exit status: 0
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:24,992 [wrapper] pandaids: 6892547897
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:25,028 [wrapper] cleanup supervisor_pilot   809 6101
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:25,034 [wrapper] Test setup, not cleaning
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:25,039 [wrapper] apfmon messages muted
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:25,044 [wrapper] ==== wrapper stdout END ====
2025-11-25 09:12:26 (12764): Guest Log: 2025-11-25 17:12:25,049 [wrapper] ==== wrapper stderr END ====
2025-11-25 09:12:26 (12764): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 09:12:26 (12764): Guest Log:     "exeErrorCode": 0,
2025-11-25 09:12:26 (12764): Guest Log:     "exeErrorDiag": "",
2025-11-25 09:12:26 (12764): Guest Log:     "pilotErrorCode": 0,
2025-11-25 09:12:26 (12764): Guest Log:     "pilotErrorDiag": "",
2025-11-25 09:12:26 (12764): Guest Log:  *** Listing of results directory ***
2025-11-25 09:12:26 (12764): Guest Log: total 906000
2025-11-25 09:12:26 (12764): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 19 08:32 pilot3.tar.gz
2025-11-25 09:12:26 (12764): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 19 08:33 queuedata.json
2025-11-25 09:12:26 (12764): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 19 08:35 runpilot2-wrapper.sh
2025-11-25 09:12:26 (12764): Guest Log: -rwxr-xr-x. 1 atlas atlas      9129 Nov 25 04:05 init_data.xml
2025-11-25 09:12:26 (12764): Guest Log: -rwxr-xr-x. 1 atlas atlas    590099 Nov 25 04:05 input.tar.gz
2025-11-25 09:12:26 (12764): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 25 04:05 start_atlas.sh
2025-11-25 09:12:26 (12764): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 25 04:05 EVNT.47493027._000320.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 09:12:26 (12764): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 25 04:06 pandaJob.out
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas    991801 Nov 25 04:06 agis_schedconf.cvmfs.json
2025-11-25 09:12:26 (12764): Guest Log: drwx------. 5 atlas atlas      4096 Nov 25 04:06 pilot3
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas 907753979 Nov 25 17:10 HITS.47493029._003155.pool.root.1
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas      1042 Nov 25 17:11 memory_monitor_summary.json
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 17:11 agis_ddmendpoints.agis.ALL.json
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas   1982557 Nov 25 17:11 log.47493029._003155.job.log.tgz.1
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas        95 Nov 25 17:11 pilot_heartbeat.json
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas      8624 Nov 25 17:11 heartbeat.json
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas      4798 Nov 25 17:12 pilotlog.txt
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas   6087723 Nov 25 17:12 log.47493029._003155.job.log.1
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 17:12 output.list
2025-11-25 09:12:26 (12764): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 17:12 runtime_log
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas   8089600 Nov 25 17:12 result.tar.gz
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas       670 Nov 25 17:12 z6qLDm3psf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmy6FKDmgRVdjn.diag
2025-11-25 09:12:26 (12764): Guest Log: -rw-r--r--. 1 atlas atlas      8648 Nov 25 17:12 runtime_log.err
2025-11-25 09:12:26 (12764): Guest Log: Looking for outputfile HITS.47493029._003155.pool.root.1
2025-11-25 09:12:26 (12764): Guest Log: HITS file was successfully produced
2025-11-25 09:12:26 (12764): Guest Log: -rw-------. 1 atlas atlas 907753979 Nov 25 17:10 /home/atlas/RunAtlas/HITS.47493029._003155.pool.root.1
2025-11-25 09:12:29 (12764): Guest Log: Successfully finished the ATLAS job!
2025-11-25 09:12:29 (12764): Guest Log: Copying the results back to the shared directory!
2025-11-25 09:12:29 (12764): Guest Log:  *** Contents of shared directory: ***
2025-11-25 09:12:29 (12764): Guest Log: total 1292960
2025-11-25 09:12:29 (12764): Guest Log: -rwxrwxrwx. 1 root root 407521214 Nov 25 04:04 ATLAS.root_0
2025-11-25 09:12:29 (12764): Guest Log: -rwxrwxrwx. 1 root root 907753979 Nov 25 17:12 HITS.pool.root.1
2025-11-25 09:12:29 (12764): Guest Log: -rwxrwxrwx. 1 root root      9129 Nov 25 04:04 init_data.xml
2025-11-25 09:12:29 (12764): Guest Log: -rwxrwxrwx. 1 root root    590099 Nov 19 15:47 input.tar.gz
2025-11-25 09:12:29 (12764): Guest Log: -rwxrwxrwx. 1 root root   8089600 Nov 25 17:12 result.tar.gz
2025-11-25 09:12:29 (12764): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 15:47 start_atlas.sh
2025-11-25 09:12:29 (12764): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 09:12:29 (12764): VM Completion File Detected.
2025-11-25 09:12:29 (12764): Powering off VM.
2025-11-25 09:12:30 (12764): Successfully stopped VM.
2025-11-25 09:12:30 (12764): Deregistering VM. (boinc_72d5fd1485747d7f, slot#8)
2025-11-25 09:12:30 (12764): Removing network bandwidth throttle group from VM.
2025-11-25 09:12:30 (12764): Removing VM from VirtualBox.
2025-11-25 09:12:35 (12764): called boinc_finish(0)

</stderr_txt>
]]>

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