Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-19 16:24:56 (7232): vboxwrapper version 26210
2025-11-19 16:24:56 (7232): BOINC client version: 8.2.4
2025-11-19 16:24:57 (7232): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-11-19 16:24:57 (7232): Successfully copied 'init_data.xml' to the shared directory.
2025-11-19 16:24:57 (7232): Create VM. (boinc_8b64fa68ac039603, slot#19)
2025-11-19 16:24:58 (7232): Setting Memory Size for VM. (4400MB)
2025-11-19 16:24:58 (7232): Setting CPU Count for VM. (4)
2025-11-19 16:24:58 (7232): Setting Chipset Options for VM.
2025-11-19 16:24:59 (7232): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-19 16:24:59 (7232): Setting Boot Options for VM.
2025-11-19 16:24:59 (7232): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-19 16:25:00 (7232): Enabling VM Network Access.
2025-11-19 16:25:00 (7232): Disabling USB Support for VM.
2025-11-19 16:25:00 (7232): Disabling COM Port Support for VM.
2025-11-19 16:25:00 (7232): Disabling LPT Port Support for VM.
2025-11-19 16:25:01 (7232): Disabling Audio Support for VM.
2025-11-19 16:25:01 (7232): Disabling Clipboard Support for VM.
2025-11-19 16:25:01 (7232): Disabling Drag and Drop Support for VM.
2025-11-19 16:25:02 (7232): Adding storage controller(s) to VM.
2025-11-19 16:25:02 (7232): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-19 16:25:02 (7232): Adding VirtualBox Guest Additions to VM.
2025-11-19 16:25:03 (7232): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-19 16:25:03 (7232): forwarding host port 59884 to guest port 80
2025-11-19 16:25:03 (7232): Enabling remote desktop for VM.
2025-11-19 16:25:04 (7232): Enabling shared directory for VM.
2025-11-19 16:25:04 (7232): Starting VM using VBoxManage interface. (boinc_8b64fa68ac039603, slot#19)
2025-11-19 16:25:09 (7232): Successfully started VM. (PID = '12576')
2025-11-19 16:25:09 (7232): Reporting VM Process ID to BOINC.
2025-11-19 16:25:09 (7232): Guest Log: BIOS: VirtualBox 7.1.8
2025-11-19 16:25:09 (7232): Guest Log: CPUID EDX: 0x178bfbff
2025-11-19 16:25:09 (7232): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-19 16:25:09 (7232): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-19 16:25:09 (7232): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-19 16:25:09 (7232): Detected: Web Application Enabled (http://localhost:59884)
2025-11-19 16:25:09 (7232): Detected: Remote Desktop Enabled (localhost:59885)
2025-11-19 16:25:09 (7232): Preference change detected
2025-11-19 16:25:09 (7232): Setting CPU throttle for VM. (100%)
2025-11-19 16:25:09 (7232): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-19 16:25:11 (7232): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-19 16:25:11 (7232): Guest Log: BIOS: Booting from Hard Disk...
2025-11-19 16:25:14 (7232): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-19 16:25:14 (7232): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-19 16:25:14 (7232): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-19 16:25:46 (7232): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-19 16:25:46 (7232): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-19 16:25:50 (7232): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-19 16:25:50 (7232): Guest Log: 00:00:00.000096 main     Log opened 2025-11-19T16:25:48.168269000Z
2025-11-19 16:25:50 (7232): Guest Log: 00:00:00.000169 main     OS Product: Linux
2025-11-19 16:25:50 (7232): Guest Log: 00:00:00.000187 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-19 16:25:50 (7232): Guest Log: 00:00:00.000203 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-19 16:25:50 (7232): Guest Log: 00:00:00.000216 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-19 16:25:50 (7232): Guest Log: 00:00:00.000216 main     Process ID: 1318
2025-11-19 16:25:50 (7232): Guest Log: 00:00:00.000216 main     Package type: LINUX_64BITS_GENERIC
2025-11-19 16:25:50 (7232): Guest Log: 00:00:00.000656 main     5.2.32 r132073 started. Verbose level = 0
2025-11-19 16:25:50 (7232): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-19 16:25:50 (7232): Guest Log: [INFO] Mounting shared directory
2025-11-19 16:25:50 (7232): Guest Log: [INFO] Checking for init_data.xml
2025-11-19 16:25:53 (7232): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-19 16:25:53 (7232): Guest Log: [INFO] Detected branch: prod
2025-11-19 16:25:53 (7232): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-19 16:25:53 (7232): Guest Log: Copying input files
2025-11-19 16:25:56 (7232): Guest Log: Copied input files into RunAtlas.
2025-11-19 16:25:56 (7232): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-19 16:25:56 (7232): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-19 16:25:56 (7232): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-19 16:25:56 (7232): Guest Log: Further information can be found at the LHC@home message board.
2025-11-19 16:26:00 (7232): Guest Log: 00:00:10.002866 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 616 290 619 000ns (GuestNow=1 763 565 931 879 180 000 ns GuestLast=1 763 569 548 169 799 000 ns fSetTimeLastLoop=true )
2025-11-19 16:26:04 (7232): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-19 16:26:04 (7232): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-19 16:26:04 (7232): Guest Log: 2.6.3.0 1593 0 32204 153049 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-19 16:26:05 (7232): Guest Log: copied the webapp to /var/www
2025-11-19 16:26:05 (7232): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-19 16:26:05 (7232): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-19 16:26:05 (7232): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-19 16:26:05 (7232): Guest Log:  *** Starting ATLAS job. (PandaID=6892546781 taskID=47493029) ***
2025-11-19 18:08:57 (7232): Status Report: Elapsed Time: '6000.000000'
2025-11-19 18:08:57 (7232): Status Report: CPU Time: '23471.703125'
2025-11-19 19:53:22 (7232): Status Report: Elapsed Time: '12000.000000'
2025-11-19 19:53:22 (7232): Status Report: CPU Time: '48337.640625'
2025-11-19 21:40:11 (7232): Status Report: Elapsed Time: '18000.000000'
2025-11-19 21:40:11 (7232): Status Report: CPU Time: '73763.031250'
2025-11-19 23:21:25 (7232): Status Report: Elapsed Time: '24000.000000'
2025-11-19 23:21:25 (7232): Status Report: CPU Time: '97863.968750'
2025-11-20 01:04:32 (7232): Status Report: Elapsed Time: '30000.000000'
2025-11-20 01:04:32 (7232): Status Report: CPU Time: '122426.218750'
2025-11-20 02:45:36 (7232): Status Report: Elapsed Time: '36000.000000'
2025-11-20 02:45:36 (7232): Status Report: CPU Time: '146504.953125'
2025-11-20 04:27:36 (7232): Status Report: Elapsed Time: '42000.000000'
2025-11-20 04:27:36 (7232): Status Report: CPU Time: '170804.578125'
2025-11-20 05:50:49 (7232): VM state change detected. (old = 'running', new = 'paused')
2025-11-20 05:53:01 (7232): VM state change detected. (old = 'paused', new = 'running')
2025-11-20 06:15:50 (7232): Status Report: Elapsed Time: '48000.638863'
2025-11-20 06:15:50 (7232): Status Report: CPU Time: '196006.500000'
2025-11-20 08:00:26 (7232): Status Report: Elapsed Time: '54000.638863'
2025-11-20 08:00:26 (7232): Status Report: CPU Time: '220900.156250'
2025-11-20 08:18:17 (7232): VM state change detected. (old = 'running', new = 'paused')
2025-11-20 08:29:51 (7232): VM state change detected. (old = 'paused', new = 'running')
2025-11-20 08:48:31 (7232): Guest Log:  *** Job finished ***
2025-11-20 08:48:31 (7232): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:13,643 | INFO     | found 0 job(s) in 20 queues
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:13,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:13,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:15,060 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139768517412672)>', '<ExcThread(monitor, started 139767933024000)>']
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:15,655 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:15,656 | INFO     | [monitor] control thread has ended
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,102 | INFO     | all workflow threads have been joined
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,102 | INFO     | end of generic workflow (traces error code: 0)
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,102 | INFO     | traces error code: 0
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,102 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,230 [wrapper] ==== pilot stdout END ====
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,236 [wrapper] ==== wrapper stdout RESUME ====
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,241 [wrapper] pilotpid: 6008
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,245 [wrapper] Pilot exit status: 0
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,262 [wrapper] pandaids: 6892546781
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,297 [wrapper] cleanup supervisor_pilot 18797 6009
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,300 [wrapper] Test setup, not cleaning
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,305 [wrapper] apfmon messages muted
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,311 [wrapper] ==== wrapper stdout END ====
2025-11-20 08:48:31 (7232): Guest Log: 2025-11-20 07:34:20,315 [wrapper] ==== wrapper stderr END ====
2025-11-20 08:48:31 (7232): Guest Log:  *** Error codes and diagnostics ***
2025-11-20 08:48:31 (7232): Guest Log:     "exeErrorCode": 0,
2025-11-20 08:48:31 (7232): Guest Log:     "exeErrorDiag": "",
2025-11-20 08:48:31 (7232): Guest Log:     "pilotErrorCode": 0,
2025-11-20 08:48:31 (7232): Guest Log:     "pilotErrorDiag": "",
2025-11-20 08:48:31 (7232): Guest Log:  *** Listing of results directory ***
2025-11-20 08:48:31 (7232): Guest Log: total 922304
2025-11-20 08:48:31 (7232): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 19 08:32 pilot3.tar.gz
2025-11-20 08:48:31 (7232): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 19 08:33 queuedata.json
2025-11-20 08:48:31 (7232): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 19 08:33 runpilot2-wrapper.sh
2025-11-20 08:48:31 (7232): Guest Log: -rwxr-xr-x. 1 atlas atlas      8817 Nov 19 15:25 init_data.xml
2025-11-20 08:48:31 (7232): Guest Log: -rwxr-xr-x. 1 atlas atlas    590094 Nov 19 15:25 input.tar.gz
2025-11-20 08:48:31 (7232): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 19 15:25 start_atlas.sh
2025-11-20 08:48:31 (7232): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 19 15:25 EVNT.47493027._000308.pool.root.1 -> /data/./ATLAS.root_0
2025-11-20 08:48:31 (7232): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 19 15:25 pandaJob.out
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas    989434 Nov 19 15:26 agis_schedconf.cvmfs.json
2025-11-20 08:48:31 (7232): Guest Log: drwx------. 5 atlas atlas      4096 Nov 19 15:26 pilot3
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas 921904865 Nov 20 07:32 HITS.47493029._003038.pool.root.1
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas      1037 Nov 20 07:33 memory_monitor_summary.json
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas   1525063 Nov 20 07:33 agis_ddmendpoints.agis.ALL.json
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas   1660986 Nov 20 07:33 log.47493029._003038.job.log.tgz.1
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas        95 Nov 20 07:33 pilot_heartbeat.json
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas      8601 Nov 20 07:33 heartbeat.json
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 20 07:34 pilotlog.txt
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas   7682846 Nov 20 07:34 log.47493029._003038.job.log.1
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas       353 Nov 20 07:34 output.list
2025-11-20 08:48:31 (7232): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 20 07:34 runtime_log
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas   9359360 Nov 20 07:34 result.tar.gz
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas       663 Nov 20 07:34 ygnNDmYosf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm03GKDm0hvMum.diag
2025-11-20 08:48:31 (7232): Guest Log: -rw-r--r--. 1 atlas atlas      8633 Nov 20 07:34 runtime_log.err
2025-11-20 08:48:31 (7232): Guest Log: Looking for outputfile HITS.47493029._003038.pool.root.1
2025-11-20 08:48:31 (7232): Guest Log: HITS file was successfully produced
2025-11-20 08:48:31 (7232): Guest Log: -rw-------. 1 atlas atlas 921904865 Nov 20 07:32 /home/atlas/RunAtlas/HITS.47493029._003038.pool.root.1
2025-11-20 08:48:34 (7232): Guest Log: Successfully finished the ATLAS job!
2025-11-20 08:48:34 (7232): Guest Log: Copying the results back to the shared directory!
2025-11-20 08:48:34 (7232): Guest Log:  *** Contents of shared directory: ***
2025-11-20 08:48:34 (7232): Guest Log: total 1310388
2025-11-20 08:48:34 (7232): Guest Log: -rwxrwxrwx. 1 root root 409944476 Nov 19 15:24 ATLAS.root_0
2025-11-20 08:48:34 (7232): Guest Log: -rwxrwxrwx. 1 root root 921904865 Nov 20  2025 HITS.pool.root.1
2025-11-20 08:48:34 (7232): Guest Log: -rwxrwxrwx. 1 root root      8817 Nov 19 15:24 init_data.xml
2025-11-20 08:48:34 (7232): Guest Log: -rwxrwxrwx. 1 root root    590094 Nov 19 15:23 input.tar.gz
2025-11-20 08:48:34 (7232): Guest Log: -rwxrwxrwx. 1 root root   9359360 Nov 20  2025 result.tar.gz
2025-11-20 08:48:34 (7232): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 15:23 start_atlas.sh
2025-11-20 08:48:34 (7232): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-20 08:48:34 (7232): VM Completion File Detected.
2025-11-20 08:48:34 (7232): Powering off VM.
2025-11-20 08:48:35 (7232): Successfully stopped VM.
2025-11-20 08:48:35 (7232): Deregistering VM. (boinc_8b64fa68ac039603, slot#19)
2025-11-20 08:48:35 (7232): Removing network bandwidth throttle group from VM.
2025-11-20 08:48:35 (7232): Removing VM from VirtualBox.
2025-11-20 08:48:41 (7232): called boinc_finish(0)

</stderr_txt>
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