Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:28 (678946): wrapper (7.7.26015): starting
00:04:28 (678946): wrapper: running run_atlas (--nthreads 9)
[2025-11-20 00:04:28] Arguments: --nthreads 9
[2025-11-20 00:04:28] Threads: 9
[2025-11-20 00:04:28] Checking for CVMFS
[2025-11-20 00:04:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 00:04:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 00:04:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 00:04:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 00:04:31] 2.13.2.0 5239 24654 165636 153069 0 74 35255593 39288832 7393 16776704 0 12345807 99.623 11536303 36460 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 00:04:31] CVMFS is ok
[2025-11-20 00:04:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 00:04:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 00:04:31] Further information can be found at the LHC@home message board.
[2025-11-20 00:04:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 00:04:31] Checking for apptainer binary...
[2025-11-20 00:04:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 00:04:31] Running /usr/bin/apptainer --version
[2025-11-20 00:04:31] apptainer version 1.4.4-1.el9
[2025-11-20 00:04:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 00:04:31] c-210-6.aglt2.org
[2025-11-20 00:04:31] apptainer works
[2025-11-20 00:04:32] Set ATHENA_PROC_NUMBER=9
[2025-11-20 00:04:32] Set ATHENA_CORE_NUMBER=9
[2025-11-20 00:04:32] Starting ATLAS job with PandaID=6892547581
[2025-11-20 00:04:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:48:02]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:48:02] 2025-11-21 01:47:10,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:48:02] 2025-11-21 01:47:10,756 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 20:48:02] 2025-11-21 01:47:10,766 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2806
[2025-11-20 20:48:02] 2025-11-21 01:47:10,781 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6892547581/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 20:48:02] 2025-11-21 01:47:10,782 | INFO     | extracted standard info from prmon json
[2025-11-20 20:48:02] 2025-11-21 01:47:10,782 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 20:48:02] 2025-11-21 01:47:10,782 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 20:48:02] 2025-11-21 01:47:10,834 | INFO     | fitting pss+swap vs Time
[2025-11-20 20:48:02] 2025-11-21 01:47:10,837 | INFO     | sum of square deviations: 561615821276.1249
[2025-11-20 20:48:02] 2025-11-21 01:47:10,881 | INFO     | sum of deviations: 3887798785511.2065
[2025-11-20 20:48:02] 2025-11-21 01:47:10,882 | INFO     | mean x: 1763652430.757178
[2025-11-20 20:48:02] 2025-11-21 01:47:10,882 | INFO     | mean y: 3116651.1763740773
[2025-11-20 20:48:02] 2025-11-21 01:47:10,882 | INFO     | intersect: -12205808949.92498
[2025-11-20 20:48:02] 2025-11-21 01:47:10,885 | INFO     | chi2: 14.405584168972597
[2025-11-20 20:48:02] 2025-11-21 01:47:10,887 | INFO     | sum of square deviations: 554733954162.7516
[2025-11-20 20:48:02] 2025-11-21 01:47:10,931 | INFO     | sum of deviations: 4356779651737.547
[2025-11-20 20:48:02] 2025-11-21 01:47:10,932 | INFO     | mean x: 1763652278.2726524
[2025-11-20 20:48:02] 2025-11-21 01:47:10,932 | INFO     | mean y: 3127042.0436573313
[2025-11-20 20:48:02] 2025-11-21 01:47:10,932 | INFO     | intersect: -13848277403.382662
[2025-11-20 20:48:02] 2025-11-21 01:47:10,934 | INFO     | chi2: 10.88293630456251
[2025-11-20 20:48:02] 2025-11-21 01:47:10,934 | INFO     | current chi2=10.88293630456251 (change=24.45334963921371 %)
[2025-11-20 20:48:02] 2025-11-21 01:47:10,934 | INFO     | right removable region: 1213
[2025-11-20 20:48:02] 2025-11-21 01:47:10,937 | INFO     | sum of square deviations: 554731160362.752
[2025-11-20 20:48:02] 2025-11-21 01:47:10,981 | INFO     | sum of deviations: 3374933299539.8315
[2025-11-20 20:48:02] 2025-11-21 01:47:10,981 | INFO     | mean x: 1763652583.2726524
[2025-11-20 20:48:02] 2025-11-21 01:47:10,981 | INFO     | mean y: 3128010.169686985
[2025-11-20 20:48:02] 2025-11-21 01:47:10,981 | INFO     | intersect: -10726771907.86273
[2025-11-20 20:48:02] 2025-11-21 01:47:10,983 | INFO     | chi2: 10.507410487807151
[2025-11-20 20:48:02] 2025-11-21 01:47:10,983 | INFO     | current chi2=10.507410487807151 (change=27.0601569186032 %)
[2025-11-20 20:48:02] 2025-11-21 01:47:10,985 | INFO     | sum of square deviations: 547902965623.7936
[2025-11-20 20:48:02] 2025-11-21 01:47:11,020 | INFO     | sum of deviations: 2933209012344.9604
[2025-11-20 20:48:02] 2025-11-21 01:47:11,020 | INFO     | mean x: 1763652735.7882547
[2025-11-20 20:48:02] 2025-11-21 01:47:11,020 | INFO     | mean y: 3137872.94127378
[2025-11-20 20:48:02] 2025-11-21 01:47:11,020 | INFO     | intersect: -9438610801.244587
[2025-11-20 20:48:02] 2025-11-21 01:47:11,022 | INFO     | chi2: 7.68734323712615
[2025-11-20 20:48:02] 2025-11-21 01:47:11,022 | INFO     | current chi2=7.68734323712615 (change=26.83884153905875 %)
[2025-11-20 20:48:02] 2025-11-21 01:47:11,024 | INFO     | sum of square deviations: 541131666933.14496
[2025-11-20 20:48:02] 2025-11-21 01:47:11,059 | INFO     | sum of deviations: 2762145948505.394
[2025-11-20 20:48:02] 2025-11-21 01:47:11,059 | INFO     | mean x: 1763652888.2965117
[2025-11-20 20:48:02] 2025-11-21 01:47:11,059 | INFO     | mean y: 3141722.7607973423
[2025-11-20 20:48:02] 2025-11-21 01:47:11,059 | INFO     | intersect: -8999226790.593826
[2025-11-20 20:48:02] 2025-11-21 01:47:11,061 | INFO     | chi2: 7.305337842988379
[2025-11-20 20:48:02] 2025-11-21 01:47:11,061 | INFO     | current chi2=7.305337842988379 (change=4.969277191798454 %)
[2025-11-20 20:48:02] 2025-11-21 01:47:11,061 | INFO     | left removable region: 30
[2025-11-20 20:48:02] 2025-11-21 01:47:11,063 | INFO     | sum of square deviations: 513303880832.8391
[2025-11-20 20:48:02] 2025-11-21 01:47:11,096 | INFO     | sum of deviations: 3017923423715.444
[2025-11-20 20:48:02] 2025-11-21 01:47:11,097 | INFO     | mean x: 1763653162.8377008
[2025-11-20 20:48:02] 2025-11-21 01:47:11,097 | INFO     | mean y: 3161197.5908706677
[2025-11-20 20:48:02] 2025-11-21 01:47:11,097 | INFO     | intersect: -10366076967.532328
[2025-11-20 20:48:02] 2025-11-21 01:47:11,098 | INFO     | chi2: 2.9469708245399486
[2025-11-20 20:48:02] 2025-11-21 01:47:11,099 | INFO     | current memory leak: 5.88 B/s (using 1183 data points, chi2=2.95)
[2025-11-20 20:48:02] 2025-11-21 01:47:11,100 | INFO     | could have reported an average CPU frequency of 2597 MHz (44 samples)
[2025-11-20 20:48:02] 2025-11-21 01:47:11,100 | INFO     | ..............................
[2025-11-20 20:48:02] 2025-11-21 01:47:11,100 | INFO     | . Timing measurements:
[2025-11-20 20:48:02] 2025-11-21 01:47:11,100 | INFO     | . get job = 0 s
[2025-11-20 20:48:02] 2025-11-21 01:47:11,100 | INFO     | . initial setup = 7 s
[2025-11-20 20:48:02] 2025-11-21 01:47:11,100 | INFO     | . payload setup = 42 s
[2025-11-20 20:48:02] 2025-11-21 01:47:11,100 | INFO     | . stage-in = 0 s
[2025-11-20 20:48:02] 2025-11-21 01:47:11,100 | INFO     | . payload execution = 74364 s
[2025-11-20 20:48:02] 2025-11-21 01:47:11,101 | INFO     | . stage-out = 4 s
[2025-11-20 20:48:02] 2025-11-21 01:47:11,101 | INFO     | . log creation = 1 s
[2025-11-20 20:48:02] 2025-11-21 01:47:11,101 | INFO     | ..............................
[2025-11-20 20:48:02] 2025-11-21 01:47:11,134 | INFO     | time since job start (74491s) is within the limit (172800.0s)
[2025-11-20 20:48:02] 2025-11-21 01:47:11,209 | INFO     | 
[2025-11-20 20:48:02] 2025-11-21 01:47:11,209 | INFO     | job summary report
[2025-11-20 20:48:02] 2025-11-21 01:47:11,209 | INFO     | --------------------------------------------------
[2025-11-20 20:48:02] 2025-11-21 01:47:11,209 | INFO     | PanDA job id: 6892547581
[2025-11-20 20:48:02] 2025-11-21 01:47:11,209 | INFO     | task id: 47493029
[2025-11-20 20:48:02] 2025-11-21 01:47:11,209 | INFO     | errors: (none)
[2025-11-20 20:48:02] 2025-11-21 01:47:11,209 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | pilot state: finished 
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | transexitcode: 0
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | exeerrorcode: 0
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | exeerrordiag: 
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | exitcode: 0
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | exitmsg: OK
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | cpuconsumptiontime: 313292 s
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | nevents: 1000
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | neventsw: 0
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | pid: 692761
[2025-11-20 20:48:02] 2025-11-21 01:47:11,210 | INFO     | pgrp: 692761
[2025-11-20 20:48:02] 2025-11-21 01:47:11,211 | INFO     | corecount: 9
[2025-11-20 20:48:02] 2025-11-21 01:47:11,211 | INFO     | event service: False
[2025-11-20 20:48:02] 2025-11-21 01:47:11,211 | INFO     | sizes: {0: 2296372, 1: 2297057, 2: 2297228, 3: 2297284, 14: 2297284, 25: 2297312, 32: 2297730, 36: 2297758, 74408: 2357747, 74413: 2368393, 74425: 2368583}
[2025-11-20 20:48:02] 2025-11-21 01:47:11,211 | INFO     | --------------------------------------------------
[2025-11-20 20:48:02] 2025-11-21 01:47:11,211 | INFO     | 
[2025-11-20 20:48:02] 2025-11-21 01:47:11,211 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-20 20:48:02] 2025-11-21 01:47:11,254 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,254 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,254 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,255 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,255 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,255 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,255 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,255 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,255 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,255 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,255 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,255 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,256 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,256 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:48:02] 2025-11-21 01:47:11,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,256 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:48:02] 2025-11-21 01:47:11,257 | INFO     | job 6892547581 has completed (purged errors)
[2025-11-20 20:48:02] 2025-11-21 01:47:11,257 | INFO     | overall cleanup function is called
[2025-11-20 20:48:02] 2025-11-21 01:47:12,278 | INFO     | --- collectZombieJob: --- 10, [692761]
[2025-11-20 20:48:02] 2025-11-21 01:47:12,278 | INFO     | zombie collector waiting for pid 692761
[2025-11-20 20:48:02] 2025-11-21 01:47:12,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:48:02] 2025-11-21 01:47:12,278 | INFO     | collected zombie processes
[2025-11-20 20:48:02] 2025-11-21 01:47:12,278 | INFO     | will attempt to kill all subprocesses of pid=692761
[2025-11-20 20:48:02] 2025-11-21 01:47:12,551 | INFO     | process IDs to be killed: [692761] (in reverse order)
[2025-11-20 20:48:02] 2025-11-21 01:47:12,649 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:48:02] 2025-11-21 01:47:12,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:48:02] 2025-11-21 01:47:12,665 | INFO     | did not find any defunct processes belonging to 692761
[2025-11-20 20:48:02] 2025-11-21 01:47:12,682 | INFO     | did not find any defunct processes belonging to 692761
[2025-11-20 20:48:02] 2025-11-21 01:47:12,683 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:48:02] 2025-11-21 01:47:12,683 | INFO     | ready for new job
[2025-11-20 20:48:02] 2025-11-21 01:47:12,684 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:48:02] 2025-11-21 01:47:12,691 | INFO     | ***************************************
[2025-11-20 20:48:02] 2025-11-21 01:47:12,691 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:48:02] 2025-11-21 01:47:12,691 | INFO     | ***************************************
[2025-11-20 20:48:02] 2025-11-21 01:47:12,691 | INFO     | 
[2025-11-20 20:48:02] 2025-11-21 01:47:12,694 | INFO     | architecture information:
[2025-11-20 20:48:02] 2025-11-21 01:47:12,696 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:48:02] 2025-11-21 01:47:12,724 | INFO     | cat /etc/os-release:
[2025-11-20 20:48:02] NAME="CentOS Linux"
[2025-11-20 20:48:02] VERSION="7 (Core)"
[2025-11-20 20:48:02] ID="centos"
[2025-11-20 20:48:02] ID_LIKE="rhel fedora"
[2025-11-20 20:48:02] VERSION_ID="7"
[2025-11-20 20:48:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:48:02] ANSI_COLOR="0;31"
[2025-11-20 20:48:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:48:02] HOME_URL="https://www.centos.org/"
[2025-11-20 20:48:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:48:02] 
[2025-11-20 20:48:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:48:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:48:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:48:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:48:02] 
[2025-11-20 20:48:02] 2025-11-21 01:47:12,725 | INFO     | ***************************************
[2025-11-20 20:48:02] 2025-11-21 01:47:13,229 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-20 20:48:02] 2025-11-21 01:47:13,266 | INFO     | sufficient remaining disk space (49234837504 B)
[2025-11-20 20:48:02] 2025-11-21 01:47:13,266 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:48:02] 2025-11-21 01:47:13,267 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:48:02] 2025-11-21 01:47:13,267 | INFO     | update_server=False
[2025-11-20 20:48:02] 2025-11-21 01:47:13,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:48:02] 2025-11-21 01:47:13,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:48:02] 2025-11-21 01:47:13,882 | INFO     | aborting loop
[2025-11-20 20:48:02] 2025-11-21 01:47:14,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:48:02] 2025-11-21 01:47:14,273 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:14,302 | INFO     | all data control threads have been joined
[2025-11-20 20:48:02] 2025-11-21 01:47:14,399 | INFO     | all job control threads have been joined
[2025-11-20 20:48:02] 2025-11-21 01:47:14,473 | INFO     | [job] validate thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:14,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:48:02] 2025-11-21 01:47:14,498 | INFO     | all payload control threads have been joined
[2025-11-20 20:48:02] 2025-11-21 01:47:14,552 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:14,585 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:14,888 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:14,930 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:15,068 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:15,297 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:15,308 | INFO     | [data] control thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:15,314 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:15,405 | INFO     | [job] control thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:15,503 | INFO     | [payload] control thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:16,223 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:48:02] 2025-11-21 01:47:16,486 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:17,229 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:18,131 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:23,652 | INFO     | job.realtimelogging is not enabled
[2025-11-20 20:48:02] 2025-11-21 01:47:24,659 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:48:02] 2025-11-21 01:47:44,529 | INFO     | PID=684314 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 20:48:02] 2025-11-21 01:47:44,530 | INFO     | .. there are 9 such processes running
[2025-11-20 20:48:02] 2025-11-21 01:47:44,530 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:48:02] 2025-11-21 01:47:44,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:48:02] 2025-11-21 01:47:44,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:48:02] 2025-11-21 01:47:56,701 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:48:02] 2025-11-21 01:47:57,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708255233856)>', '<ExcThread(monitor, started 139707627333376)>']
[2025-11-20 20:48:02] 2025-11-21 01:47:57,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:48:02] 2025-11-21 01:47:57,617 | INFO     | [monitor] control thread has ended
[2025-11-20 20:48:02] 2025-11-21 01:48:02,208 | INFO     | all workflow threads have been joined
[2025-11-20 20:48:02] 2025-11-21 01:48:02,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:48:02] 2025-11-21 01:48:02,209 | INFO     | traces error code: 0
[2025-11-20 20:48:02] 2025-11-21 01:48:02,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:48:02] 2025-11-21 01:48:02,357 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:48:02] 2025-11-21 01:48:02,364 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:48:02] 2025-11-21 01:48:02,384 [wrapper] pilotpid: 684314
[2025-11-20 20:48:02] 2025-11-21 01:48:02,387 [wrapper] Pilot exit status: 0
[2025-11-20 20:48:02] 2025-11-21 01:48:02,399 [wrapper] pandaids: 6892547581
[2025-11-20 20:48:02] 2025-11-21 01:48:02,446 [wrapper] cleanup supervisor_pilot 2468660 684315
[2025-11-20 20:48:02] 2025-11-21 01:48:02,449 [wrapper] Test setup, not cleaning
[2025-11-20 20:48:02] 2025-11-21 01:48:02,451 [wrapper] apfmon messages muted
[2025-11-20 20:48:02] 2025-11-21 01:48:02,453 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:48:02] 2025-11-21 01:48:02,456 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:48:02]  *** Error codes and diagnostics ***
[2025-11-20 20:48:02]     "exeErrorCode": 0,
[2025-11-20 20:48:02]     "exeErrorDiag": "",
[2025-11-20 20:48:02]     "pilotErrorCode": 0,
[2025-11-20 20:48:02]     "pilotErrorDiag": "",
[2025-11-20 20:48:02]  *** Listing of results directory ***
[2025-11-20 20:48:02] total 1325176
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 03:32 pilot3.tar.gz
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 03:33 queuedata.json
[2025-11-20 20:48:02] -rwx------. 1 boincer umatlas     36292 Nov 19 03:33 runpilot2-wrapper.sh
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas       100 Nov 20 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:48:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 00:04 run_atlas
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas       105 Nov 20 00:04 job.xml
[2025-11-20 20:48:02] -rw-r--r--. 2 boincer umatlas 411575789 Nov 20 00:04 EVNT.47493027._000316.pool.root.1
[2025-11-20 20:48:02] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:04 start_atlas.sh
[2025-11-20 20:48:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 00:04 shared
[2025-11-20 20:48:02] -rw-r--r--. 2 boincer umatlas    590097 Nov 20 00:04 input.tar.gz
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas         0 Nov 20 00:04 boinc_lockfile
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas      2773 Nov 20 00:04 pandaJob.out
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas    989427 Nov 20 00:05 agis_schedconf.cvmfs.json
[2025-11-20 20:48:02] drwx------. 5 boincer umatlas      4096 Nov 20 00:05 pilot3
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas       533 Nov 20 20:28 boinc_task_state.xml
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas 916863560 Nov 20 20:46 HITS.47493029._003117.pool.root.1
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas      6660 Nov 20 20:46 init_data.xml
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas      1059 Nov 20 20:46 memory_monitor_summary.json
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas   1526164 Nov 20 20:46 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas   2458639 Nov 20 20:46 log.47493029._003117.job.log.tgz.1
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas      8624 Nov 20 20:47 heartbeat.json
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas        95 Nov 20 20:47 pilot_heartbeat.json
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 20:47 boinc_mmap_file
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas        29 Nov 20 20:47 wrapper_checkpoint.txt
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas      4894 Nov 20 20:48 pilotlog.txt
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas   9852945 Nov 20 20:48 log.47493029._003117.job.log.1
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas       353 Nov 20 20:48 output.list
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas       620 Nov 20 20:48 runtime_log
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas  12328960 Nov 20 20:48 result.tar.gz
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas      8699 Nov 20 20:48 runtime_log.err
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas       659 Nov 20 20:48 AXLKDmYosf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmj3GKDmhNgCJm.diag
[2025-11-20 20:48:02] -rw-r--r--. 1 boincer umatlas     21320 Nov 20 20:48 stderr.txt
[2025-11-20 20:48:02] HITS file was successfully produced:
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas 916863560 Nov 20 20:46 shared/HITS.pool.root.1
[2025-11-20 20:48:02]  *** Contents of shared directory: ***
[2025-11-20 20:48:02] total 1309948
[2025-11-20 20:48:02] -rw-r--r--. 2 boincer umatlas 411575789 Nov 20 00:04 ATLAS.root_0
[2025-11-20 20:48:02] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:04 start_atlas.sh
[2025-11-20 20:48:02] -rw-r--r--. 2 boincer umatlas    590097 Nov 20 00:04 input.tar.gz
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas 916863560 Nov 20 20:46 HITS.pool.root.1
[2025-11-20 20:48:02] -rw-------. 1 boincer umatlas  12328960 Nov 20 20:48 result.tar.gz
20:48:04 (678946): run_atlas exited; CPU time 314369.348400
20:48:04 (678946): called boinc_finish(0)

</stderr_txt>
]]>

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