Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:04:36 (1264725): wrapper (7.7.26015): starting
20:04:36 (1264725): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 20:04:36] Arguments: --nthreads 4
[2025-11-23 20:04:36] Threads: 4
[2025-11-23 20:04:36] Checking for CVMFS
[2025-11-23 20:04:36] No cvmfs_config command found, will try listing directly
[2025-11-23 20:04:36] CVMFS is ok
[2025-11-23 20:04:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:04:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:04:36] Further information can be found at the LHC@home message board.
[2025-11-23 20:04:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:04:36] Checking for apptainer binary...
[2025-11-23 20:04:36] which: no apptainer in ((null))
[2025-11-23 20:04:36] apptainer is not installed, using version from CVMFS
[2025-11-23 20:04:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:04:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-11-23 20:04:37] apptainer works
[2025-11-23 20:04:37] Set ATHENA_PROC_NUMBER=4
[2025-11-23 20:04:37] Set ATHENA_CORE_NUMBER=4
[2025-11-23 20:04:37] Starting ATLAS job with PandaID=6892547893
[2025-11-23 20:04:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:22:46]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:22:46] 2025-11-24 13:21:42,468 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6892547893/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,469 | INFO     | extracted standard info from prmon json
[2025-11-24 14:22:46] 2025-11-24 13:21:42,469 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:22:46] 2025-11-24 13:21:42,470 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:22:46] 2025-11-24 13:21:42,490 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:22:46] 2025-11-24 13:21:42,491 | INFO     | sum of square deviations: 389537434653.2605
[2025-11-24 14:22:46] 2025-11-24 13:21:42,516 | INFO     | sum of deviations: 1041116976071.4188
[2025-11-24 14:22:46] 2025-11-24 13:21:42,516 | INFO     | mean x: 1763957598.1603336
[2025-11-24 14:22:46] 2025-11-24 13:21:42,517 | INFO     | mean y: 2287168.8415199257
[2025-11-24 14:22:46] 2025-11-24 13:21:42,517 | INFO     | intersect: -4712243546.671364
[2025-11-24 14:22:46] 2025-11-24 13:21:42,518 | INFO     | chi2: 4.613044138815564
[2025-11-24 14:22:46] 2025-11-24 13:21:42,520 | INFO     | sum of square deviations: 384147367750.6332
[2025-11-24 14:22:46] 2025-11-24 13:21:42,544 | INFO     | sum of deviations: 1286645816695.5742
[2025-11-24 14:22:46] 2025-11-24 13:21:42,544 | INFO     | mean x: 1763957445.6610801
[2025-11-24 14:22:46] 2025-11-24 13:21:42,544 | INFO     | mean y: 2294111.540037244
[2025-11-24 14:22:46] 2025-11-24 13:21:42,544 | INFO     | intersect: -5905825164.607466
[2025-11-24 14:22:46] 2025-11-24 13:21:42,546 | INFO     | chi2: 2.0780283544278797
[2025-11-24 14:22:46] 2025-11-24 13:21:42,546 | INFO     | current chi2=2.0780283544278797 (change=54.9532089462853 %)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,547 | INFO     | sum of square deviations: 378807255273.0028
[2025-11-24 14:22:46] 2025-11-24 13:21:42,571 | INFO     | sum of deviations: 1302078000111.5574
[2025-11-24 14:22:46] 2025-11-24 13:21:42,572 | INFO     | mean x: 1763957293.1618335
[2025-11-24 14:22:46] 2025-11-24 13:21:42,572 | INFO     | mean y: 2294550.04303087
[2025-11-24 14:22:46] 2025-11-24 13:21:42,572 | INFO     | intersect: -6060973649.260774
[2025-11-24 14:22:46] 2025-11-24 13:21:42,573 | INFO     | chi2: 2.013242884559249
[2025-11-24 14:22:46] 2025-11-24 13:21:42,574 | INFO     | current chi2=2.013242884559249 (change=3.1176412838922705 %)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,574 | INFO     | right removable region: 1068
[2025-11-24 14:22:46] 2025-11-24 13:21:42,575 | INFO     | sum of square deviations: 384147262220.6328
[2025-11-24 14:22:46] 2025-11-24 13:21:42,590 | INFO     | monitor loop #4605: job 0:6892547893 is in state 'finished'
[2025-11-24 14:22:46] 2025-11-24 13:21:42,600 | INFO     | sum of deviations: 835329466608.0942
[2025-11-24 14:22:46] 2025-11-24 13:21:42,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,600 | INFO     | mean x: 1763957750.6610801
[2025-11-24 14:22:46] 2025-11-24 13:21:42,601 | INFO     | mean y: 2292982.849162011
[2025-11-24 14:22:46] 2025-11-24 13:21:42,601 | INFO     | intersect: -3833438862.4363723
[2025-11-24 14:22:46] 2025-11-24 13:21:42,602 | INFO     | chi2: 2.738645143151917
[2025-11-24 14:22:46] 2025-11-24 13:21:42,602 | INFO     | current chi2=2.738645143151917 (change=40.632583154621926 %)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,604 | INFO     | sum of square deviations: 378807044213.0028
[2025-11-24 14:22:46] 2025-11-24 13:21:42,626 | INFO     | sum of deviations: 798667402080.5693
[2025-11-24 14:22:46] 2025-11-24 13:21:42,627 | INFO     | mean x: 1763957903.1618335
[2025-11-24 14:22:46] 2025-11-24 13:21:42,627 | INFO     | mean y: 2294029.4649204863
[2025-11-24 14:22:46] 2025-11-24 13:21:42,627 | INFO     | intersect: -3716791181.3834143
[2025-11-24 14:22:46] 2025-11-24 13:21:42,628 | INFO     | chi2: 2.7170900722310316
[2025-11-24 14:22:46] 2025-11-24 13:21:42,629 | INFO     | current chi2=2.7170900722310316 (change=0.7870706058718351 %)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,629 | INFO     | left removable region: 20
[2025-11-24 14:22:46] 2025-11-24 13:21:42,630 | INFO     | sum of square deviations: 356918614597.4419
[2025-11-24 14:22:46] 2025-11-24 13:21:42,651 | INFO     | sum of deviations: 993464889243.9279
[2025-11-24 14:22:46] 2025-11-24 13:21:42,652 | INFO     | mean x: 1763957872.6650763
[2025-11-24 14:22:46] 2025-11-24 13:21:42,652 | INFO     | mean y: 2303289.1564885494
[2025-11-24 14:22:46] 2025-11-24 13:21:42,652 | INFO     | intersect: -4907584121.940519
[2025-11-24 14:22:46] 2025-11-24 13:21:42,653 | INFO     | chi2: 0.0817071760760491
[2025-11-24 14:22:46] 2025-11-24 13:21:42,654 | INFO     | current memory leak: 2.78 B/s (using 1048 data points, chi2=0.08)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,655 | INFO     | could have reported an average CPU frequency of 2692 MHz (40 samples)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,655 | INFO     | ..............................
[2025-11-24 14:22:46] 2025-11-24 13:21:42,655 | INFO     | . Timing measurements:
[2025-11-24 14:22:46] 2025-11-24 13:21:42,655 | INFO     | . get job = 0 s
[2025-11-24 14:22:46] 2025-11-24 13:21:42,655 | INFO     | . initial setup = 1 s
[2025-11-24 14:22:46] 2025-11-24 13:21:42,655 | INFO     | . payload setup = 6 s
[2025-11-24 14:22:46] 2025-11-24 13:21:42,655 | INFO     | . stage-in = 0 s
[2025-11-24 14:22:46] 2025-11-24 13:21:42,655 | INFO     | . payload execution = 65776 s
[2025-11-24 14:22:46] 2025-11-24 13:21:42,656 | INFO     | . stage-out = 2 s
[2025-11-24 14:22:46] 2025-11-24 13:21:42,656 | INFO     | . log creation = 0 s
[2025-11-24 14:22:46] 2025-11-24 13:21:42,656 | INFO     | ..............................
[2025-11-24 14:22:46] 2025-11-24 13:21:42,756 | INFO     | 
[2025-11-24 14:22:46] 2025-11-24 13:21:42,756 | INFO     | job summary report
[2025-11-24 14:22:46] 2025-11-24 13:21:42,756 | INFO     | --------------------------------------------------
[2025-11-24 14:22:46] 2025-11-24 13:21:42,756 | INFO     | PanDA job id: 6892547893
[2025-11-24 14:22:46] 2025-11-24 13:21:42,756 | INFO     | task id: 47493029
[2025-11-24 14:22:46] 2025-11-24 13:21:42,756 | INFO     | errors: (none)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,756 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | pilot state: finished 
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | transexitcode: 0
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | exeerrorcode: 0
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | exeerrordiag: 
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | exitcode: 0
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | exitmsg: OK
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | cpuconsumptiontime: 246290 s
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | nevents: 1000
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | neventsw: 0
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | pid: 1276077
[2025-11-24 14:22:46] 2025-11-24 13:21:42,757 | INFO     | pgrp: 1276077
[2025-11-24 14:22:46] 2025-11-24 13:21:42,758 | INFO     | corecount: 4
[2025-11-24 14:22:46] 2025-11-24 13:21:42,758 | INFO     | event service: False
[2025-11-24 14:22:46] 2025-11-24 13:21:42,758 | INFO     | sizes: {0: 2298801, 5: 2299063, 11: 2299119, 65786: 2354786, 65789: 2364593, 65790: 2364649, 65796: 2365023}
[2025-11-24 14:22:46] 2025-11-24 13:21:42,758 | INFO     | --------------------------------------------------
[2025-11-24 14:22:46] 2025-11-24 13:21:42,758 | INFO     | 
[2025-11-24 14:22:46] 2025-11-24 13:21:42,758 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2025-11-24 14:22:46] 2025-11-24 13:21:42,764 | INFO     | time since job start (65812s) is within the limit (172800.0s)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,778 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:22:46] 2025-11-24 13:21:42,780 | INFO     | job 6892547893 has completed (purged errors)
[2025-11-24 14:22:46] 2025-11-24 13:21:42,781 | INFO     | overall cleanup function is called
[2025-11-24 14:22:46] 2025-11-24 13:21:43,794 | INFO     | --- collectZombieJob: --- 10, [1276077]
[2025-11-24 14:22:46] 2025-11-24 13:21:43,794 | INFO     | zombie collector waiting for pid 1276077
[2025-11-24 14:22:46] 2025-11-24 13:21:43,795 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:22:46] 2025-11-24 13:21:43,795 | INFO     | collected zombie processes
[2025-11-24 14:22:46] 2025-11-24 13:21:43,795 | INFO     | will attempt to kill all subprocesses of pid=1276077
[2025-11-24 14:22:46] 2025-11-24 13:21:44,193 | INFO     | process IDs to be killed: [1276077] (in reverse order)
[2025-11-24 14:22:46] 2025-11-24 13:21:44,305 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:22:46] 2025-11-24 13:21:44,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:22:46] 2025-11-24 13:21:44,319 | INFO     | did not find any defunct processes belonging to 1276077
[2025-11-24 14:22:46] 2025-11-24 13:21:44,332 | INFO     | did not find any defunct processes belonging to 1276077
[2025-11-24 14:22:46] 2025-11-24 13:21:44,333 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:22:46] 2025-11-24 13:21:44,333 | INFO     | ready for new job
[2025-11-24 14:22:46] 2025-11-24 13:21:44,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:22:46] 2025-11-24 13:21:44,339 | INFO     | ***************************************
[2025-11-24 14:22:46] 2025-11-24 13:21:44,339 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:22:46] 2025-11-24 13:21:44,339 | INFO     | ***************************************
[2025-11-24 14:22:46] 2025-11-24 13:21:44,339 | INFO     | 
[2025-11-24 14:22:46] 2025-11-24 13:21:44,343 | INFO     | architecture information:
[2025-11-24 14:22:46] 2025-11-24 13:21:44,343 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:22:46] 2025-11-24 13:21:44,358 | INFO     | cat /etc/os-release:
[2025-11-24 14:22:46] NAME="CentOS Linux"
[2025-11-24 14:22:46] VERSION="7 (Core)"
[2025-11-24 14:22:46] ID="centos"
[2025-11-24 14:22:46] ID_LIKE="rhel fedora"
[2025-11-24 14:22:46] VERSION_ID="7"
[2025-11-24 14:22:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:22:46] ANSI_COLOR="0;31"
[2025-11-24 14:22:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:22:46] HOME_URL="https://www.centos.org/"
[2025-11-24 14:22:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:22:46] 
[2025-11-24 14:22:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:22:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:22:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:22:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:22:46] 
[2025-11-24 14:22:46] 2025-11-24 13:21:44,359 | INFO     | ***************************************
[2025-11-24 14:22:46] 2025-11-24 13:21:44,861 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2025-11-24 14:22:46] 2025-11-24 13:21:44,877 | INFO     | sufficient remaining disk space (680527921152 B)
[2025-11-24 14:22:46] 2025-11-24 13:21:44,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:22:46] 2025-11-24 13:21:44,877 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:22:46] 2025-11-24 13:21:44,877 | INFO     | update_server=False
[2025-11-24 14:22:46] 2025-11-24 13:21:44,878 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:22:46] 2025-11-24 13:21:45,103 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 14:22:46] 2025-11-24 13:21:45,103 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 14:22:46] 2025-11-24 13:21:45,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:22:46] 2025-11-24 13:21:45,103 | INFO     | will abort loop
[2025-11-24 14:22:46] 2025-11-24 13:21:45,231 | INFO     | all job control threads have been joined
[2025-11-24 14:22:46] 2025-11-24 13:21:45,453 | INFO     | all payload control threads have been joined
[2025-11-24 14:22:46] 2025-11-24 13:21:45,852 | INFO     | all data control threads have been joined
[2025-11-24 14:22:46] 2025-11-24 13:21:45,882 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,109 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,171 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,172 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,217 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,231 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:22:46] 2025-11-24 13:21:46,237 | INFO     | [job] control thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,454 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,458 | INFO     | [payload] control thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,828 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:46,853 | INFO     | [data] control thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:47,091 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:47,180 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:22:46] 2025-11-24 13:21:47,198 | INFO     | [job] validate thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:47,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:22:46] 2025-11-24 13:21:48,236 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:48,771 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:21:51,186 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:22:46] 2025-11-24 13:22:16,364 | INFO     | PID=1268804 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 14:22:46] 2025-11-24 13:22:16,365 | INFO     | .. there are 5 such processes running
[2025-11-24 14:22:46] 2025-11-24 13:22:16,365 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:22:46] 2025-11-24 13:22:16,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:22:46] 2025-11-24 13:22:16,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:22:46] 2025-11-24 13:22:38,930 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:22:46] 2025-11-24 13:22:39,248 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22883165054784)>', '<ExcThread(monitor, started 22882927216384)>']
[2025-11-24 14:22:46] 2025-11-24 13:22:39,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:22:46] 2025-11-24 13:22:39,459 | INFO     | [monitor] control thread has ended
[2025-11-24 14:22:46] 2025-11-24 13:22:44,273 | INFO     | all workflow threads have been joined
[2025-11-24 14:22:46] 2025-11-24 13:22:44,273 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:22:46] 2025-11-24 13:22:44,274 | INFO     | traces error code: 0
[2025-11-24 14:22:46] 2025-11-24 13:22:44,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:22:46] 2025-11-24 13:22:44,433 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:22:46] 2025-11-24 13:22:44,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:22:46] 2025-11-24 13:22:44,439 [wrapper] pilotpid: 1268804
[2025-11-24 14:22:46] 2025-11-24 13:22:44,442 [wrapper] Pilot exit status: 0
[2025-11-24 14:22:46] 2025-11-24 13:22:44,452 [wrapper] pandaids: 6892547893
[2025-11-24 14:22:46] 2025-11-24 13:22:44,529 [wrapper] cleanup supervisor_pilot 2268046 1268805
[2025-11-24 14:22:46] 2025-11-24 13:22:44,532 [wrapper] Test setup, not cleaning
[2025-11-24 14:22:46] 2025-11-24 13:22:44,535 [wrapper] apfmon messages muted
[2025-11-24 14:22:46] 2025-11-24 13:22:44,538 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:22:46] 2025-11-24 13:22:44,541 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:22:46]  *** Error codes and diagnostics ***
[2025-11-24 14:22:46]     "exeErrorCode": 0,
[2025-11-24 14:22:46]     "exeErrorDiag": "",
[2025-11-24 14:22:46]     "pilotErrorCode": 0,
[2025-11-24 14:22:46]     "pilotErrorDiag": "",
[2025-11-24 14:22:46]  *** Listing of results directory ***
[2025-11-24 14:22:46] total 1311576
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc    576529 Nov 19 09:16 pilot3.tar.gz
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc      5112 Nov 19 09:29 queuedata.json
[2025-11-24 14:22:46] -rwx------ 1 boinc boinc     36292 Nov 19 09:32 runpilot2-wrapper.sh
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc       100 Nov 23 20:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:22:46] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 20:04 run_atlas
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc       105 Nov 23 20:04 job.xml
[2025-11-24 14:22:46] -rw-r--r-- 2 boinc boinc 407521214 Nov 23 20:04 EVNT.47493027._000320.pool.root.1
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc      6633 Nov 23 20:04 init_data.xml
[2025-11-24 14:22:46] -rw-r--r-- 2 boinc boinc     15120 Nov 23 20:04 start_atlas.sh
[2025-11-24 14:22:46] drwxrwx--x 2 boinc boinc      4096 Nov 23 20:04 shared
[2025-11-24 14:22:46] -rw-r--r-- 2 boinc boinc    590098 Nov 23 20:04 input.tar.gz
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc         0 Nov 23 20:04 boinc_lockfile
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc      2770 Nov 23 20:04 pandaJob.out
[2025-11-24 14:22:46] -rw------- 1 boinc boinc    989786 Nov 23 20:04 agis_schedconf.cvmfs.json
[2025-11-24 14:22:46] drwx------ 5 boinc boinc      4096 Nov 23 20:04 pilot3
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc       532 Nov 24 14:13 boinc_task_state.xml
[2025-11-24 14:22:46] -rw------- 1 boinc boinc 909744688 Nov 24 14:20 HITS.47493029._003151.pool.root.1
[2025-11-24 14:22:46] -rw------- 1 boinc boinc        95 Nov 24 14:21 pilot_heartbeat.json
[2025-11-24 14:22:46] -rw------- 1 boinc boinc      1046 Nov 24 14:21 memory_monitor_summary.json
[2025-11-24 14:22:46] -rw------- 1 boinc boinc   1516227 Nov 24 14:21 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:22:46] -rw------- 1 boinc boinc   1787592 Nov 24 14:21 log.47493029._003151.job.log.tgz.1
[2025-11-24 14:22:46] -rw------- 1 boinc boinc      8626 Nov 24 14:21 heartbeat.json
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc        28 Nov 24 14:22 wrapper_checkpoint.txt
[2025-11-24 14:22:46] -rw------- 1 boinc boinc      5019 Nov 24 14:22 pilotlog.txt
[2025-11-24 14:22:46] -rw------- 1 boinc boinc   9147852 Nov 24 14:22 log.47493029._003151.job.log.1
[2025-11-24 14:22:46] -rw------- 1 boinc boinc       353 Nov 24 14:22 output.list
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc       620 Nov 24 14:22 runtime_log
[2025-11-24 14:22:46] -rw------- 1 boinc boinc  10956800 Nov 24 14:22 result.tar.gz
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc      9070 Nov 24 14:22 runtime_log.err
[2025-11-24 14:22:46] -rw------- 1 boinc boinc       670 Nov 24 14:22 gs7LDmumsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmH2GKDmTI7jPo.diag
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc      8192 Nov 24 14:22 boinc_mmap_file
[2025-11-24 14:22:46] -rw-r--r-- 1 boinc boinc     21107 Nov 24 14:22 stderr.txt
[2025-11-24 14:22:46] HITS file was successfully produced:
[2025-11-24 14:22:46] -rw------- 1 boinc boinc 909744688 Nov 24 14:20 shared/HITS.pool.root.1
[2025-11-24 14:22:46]  *** Contents of shared directory: ***
[2025-11-24 14:22:46] total 1297700
[2025-11-24 14:22:46] -rw-r--r-- 2 boinc boinc 407521214 Nov 23 20:04 ATLAS.root_0
[2025-11-24 14:22:46] -rw-r--r-- 2 boinc boinc     15120 Nov 23 20:04 start_atlas.sh
[2025-11-24 14:22:46] -rw-r--r-- 2 boinc boinc    590098 Nov 23 20:04 input.tar.gz
[2025-11-24 14:22:46] -rw------- 1 boinc boinc 909744688 Nov 24 14:20 HITS.pool.root.1
[2025-11-24 14:22:46] -rw------- 1 boinc boinc  10956800 Nov 24 14:22 result.tar.gz
14:22:48 (1264725): run_atlas exited; CPU time 248785.717626
14:22:48 (1264725): called boinc_finish(0)

</stderr_txt>
]]>

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