Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:05:33 (15171): wrapper (7.7.26015): starting
14:05:33 (15171): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 14:05:33] Arguments: --nthreads 8
[2025-11-22 14:05:33] Threads: 8
[2025-11-22 14:05:33] Checking for CVMFS
[2025-11-22 14:05:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:05:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:05:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:05:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:05:35] 2.11.2.0 3140 279507 135948 153172 1 85 12465114 25165825 4632 130560 9 160772107 99.909 77431279 3368 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 14:05:35] CVMFS is ok
[2025-11-22 14:05:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:05:35] Checking for apptainer binary...
[2025-11-22 14:05:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:05:35] Running /usr/bin/apptainer --version
[2025-11-22 14:05:35] apptainer version 1.3.2-1.el7
[2025-11-22 14:05:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:05:50] cg-vwn243.simple-grid.lan
[2025-11-22 14:05:50] apptainer works
[2025-11-22 14:05:50] Set ATHENA_PROC_NUMBER=8
[2025-11-22 14:05:50] Set ATHENA_CORE_NUMBER=8
[2025-11-22 14:05:50] Starting ATLAS job with PandaID=6892546327
[2025-11-22 14:05:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 16:14:31]  *** The last 200 lines of the pilot log: ***
[2025-11-23 16:14:31] 2025-11-23 15:13:22,716 | INFO     | time since job start (93826s) is within the limit (172800.0s)
[2025-11-23 16:14:31] 2025-11-23 15:13:23,941 | INFO     | monitor loop #6316: job 0:6892546327 is in state 'finished'
[2025-11-23 16:14:31] 2025-11-23 15:13:23,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:14:31] 2025-11-23 15:13:24,727 | INFO     | time since job start (93828s) is within the limit (172800.0s)
[2025-11-23 16:14:31] 2025-11-23 15:13:26,447 | INFO     | monitor loop #6317: job 0:6892546327 is in state 'finished'
[2025-11-23 16:14:31] 2025-11-23 15:13:26,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:14:31] 2025-11-23 15:13:26,733 | INFO     | time since job start (93830s) is within the limit (172800.0s)
[2025-11-23 16:14:31] 2025-11-23 15:13:28,742 | INFO     | time since job start (93832s) is within the limit (172800.0s)
[2025-11-23 16:14:31] 2025-11-23 15:13:28,952 | INFO     | monitor loop #6318: job 0:6892546327 is in state 'finished'
[2025-11-23 16:14:31] 2025-11-23 15:13:28,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:14:31] 2025-11-23 15:13:30,749 | INFO     | time since job start (93834s) is within the limit (172800.0s)
[2025-11-23 16:14:31] 2025-11-23 15:13:31,458 | INFO     | monitor loop #6319: job 0:6892546327 is in state 'finished'
[2025-11-23 16:14:31] 2025-11-23 15:13:31,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:14:31] 2025-11-23 15:13:31,993 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 16:14:31] 2025-11-23 15:13:31,994 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 16:14:31] 2025-11-23 15:13:31,996 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6892546327/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 16:14:31] 2025-11-23 15:13:31,996 | INFO     | extracted standard info from prmon json
[2025-11-23 16:14:31] 2025-11-23 15:13:31,996 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 16:14:31] 2025-11-23 15:13:31,997 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 16:14:31] 2025-11-23 15:13:32,047 | INFO     | fitting pss+swap vs Time
[2025-11-23 16:14:31] 2025-11-23 15:13:32,050 | INFO     | sum of square deviations: 1108410599858.9702
[2025-11-23 16:14:31] 2025-11-23 15:13:32,135 | INFO     | sum of deviations: 3793213243588.0415
[2025-11-23 16:14:31] 2025-11-23 15:13:32,135 | INFO     | mean x: 1763864098.406802
[2025-11-23 16:14:31] 2025-11-23 15:13:32,135 | INFO     | mean y: 2832479.4950948334
[2025-11-23 16:14:31] 2025-11-23 15:13:32,136 | INFO     | intersect: -6033479929.297695
[2025-11-23 16:14:31] 2025-11-23 15:13:32,138 | INFO     | chi2: 29.077667662241947
[2025-11-23 16:14:31] 2025-11-23 15:13:32,140 | INFO     | sum of square deviations: 1097572894549.0411
[2025-11-23 16:14:31] 2025-11-23 15:13:32,209 | INFO     | sum of deviations: 4307171485085.019
[2025-11-23 16:14:31] 2025-11-23 15:13:32,210 | INFO     | mean x: 1763863945.9114172
[2025-11-23 16:14:31] 2025-11-23 15:13:32,210 | INFO     | mean y: 2839710.148293963
[2025-11-23 16:14:31] 2025-11-23 15:13:32,210 | INFO     | intersect: -6919037214.04514
[2025-11-23 16:14:31] 2025-11-23 15:13:32,212 | INFO     | chi2: 25.73665655002677
[2025-11-23 16:14:31] 2025-11-23 15:13:32,212 | INFO     | current chi2=25.73665655002677 (change=11.489955628571824 %)
[2025-11-23 16:14:31] 2025-11-23 15:13:32,212 | INFO     | right removable region: 1523
[2025-11-23 16:14:31] 2025-11-23 15:13:32,214 | INFO     | sum of square deviations: 1097571582439.0428
[2025-11-23 16:14:31] 2025-11-23 15:13:32,283 | INFO     | sum of deviations: 3149572191995.318
[2025-11-23 16:14:31] 2025-11-23 15:13:32,283 | INFO     | mean x: 1763864250.9114172
[2025-11-23 16:14:31] 2025-11-23 15:13:32,283 | INFO     | mean y: 2841535.06167979
[2025-11-23 16:14:31] 2025-11-23 15:13:32,283 | INFO     | intersect: -5058712430.083723
[2025-11-23 16:14:31] 2025-11-23 15:13:32,285 | INFO     | chi2: 24.281395188344668
[2025-11-23 16:14:31] 2025-11-23 15:13:32,285 | INFO     | current chi2=24.281395188344668 (change=16.49469458695738 %)
[2025-11-23 16:14:31] 2025-11-23 15:13:32,286 | INFO     | left removable region: 10
[2025-11-23 16:14:31] 2025-11-23 15:13:32,288 | INFO     | sum of square deviations: 1073976506574.9694
[2025-11-23 16:14:31] 2025-11-23 15:13:32,357 | INFO     | sum of deviations: 3185464840883.2944
[2025-11-23 16:14:31] 2025-11-23 15:13:32,357 | INFO     | mean x: 1763864220.4216788
[2025-11-23 16:14:31] 2025-11-23 15:13:32,357 | INFO     | mean y: 2858571.3569068075
[2025-11-23 16:14:31] 2025-11-23 15:13:32,357 | INFO     | intersect: -5228845682.737093
[2025-11-23 16:14:31] 2025-11-23 15:13:32,359 | INFO     | chi2: 16.423755951244736
[2025-11-23 16:14:31] 2025-11-23 15:13:32,359 | INFO     | current memory leak: 2.97 B/s (using 1513 data points, chi2=16.42)
[2025-11-23 16:14:31] 2025-11-23 15:13:32,362 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2025-11-23 16:14:31] 2025-11-23 15:13:32,362 | INFO     | ..............................
[2025-11-23 16:14:31] 2025-11-23 15:13:32,362 | INFO     | . Timing measurements:
[2025-11-23 16:14:31] 2025-11-23 15:13:32,362 | INFO     | . get job = 0 s
[2025-11-23 16:14:31] 2025-11-23 15:13:32,362 | INFO     | . initial setup = 10 s
[2025-11-23 16:14:31] 2025-11-23 15:13:32,362 | INFO     | . payload setup = 165 s
[2025-11-23 16:14:31] 2025-11-23 15:13:32,362 | INFO     | . stage-in = 0 s
[2025-11-23 16:14:31] 2025-11-23 15:13:32,363 | INFO     | . payload execution = 93382 s
[2025-11-23 16:14:31] 2025-11-23 15:13:32,363 | INFO     | . stage-out = 6 s
[2025-11-23 16:14:31] 2025-11-23 15:13:32,363 | INFO     | . log creation = 2 s
[2025-11-23 16:14:31] 2025-11-23 15:13:32,363 | INFO     | ..............................
[2025-11-23 16:14:31] 2025-11-23 15:13:32,483 | INFO     | 
[2025-11-23 16:14:31] 2025-11-23 15:13:32,484 | INFO     | job summary report
[2025-11-23 16:14:31] 2025-11-23 15:13:32,484 | INFO     | --------------------------------------------------
[2025-11-23 16:14:31] 2025-11-23 15:13:32,484 | INFO     | PanDA job id: 6892546327
[2025-11-23 16:14:31] 2025-11-23 15:13:32,484 | INFO     | task id: 47493029
[2025-11-23 16:14:31] 2025-11-23 15:13:32,484 | INFO     | errors: (none)
[2025-11-23 16:14:31] 2025-11-23 15:13:32,484 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 16:14:31] 2025-11-23 15:13:32,484 | INFO     | pilot state: finished 
[2025-11-23 16:14:31] 2025-11-23 15:13:32,484 | INFO     | transexitcode: 0
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | exeerrorcode: 0
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | exeerrordiag: 
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | exitcode: 0
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | exitmsg: OK
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | cpuconsumptiontime: 335320 s
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | nevents: 1000
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | neventsw: 0
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | pid: 25538
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | pgrp: 25538
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | corecount: 8
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | event service: False
[2025-11-23 16:14:31] 2025-11-23 15:13:32,485 | INFO     | sizes: {0: 2297968, 1: 2298824, 2: 2298852, 12: 2298852, 23: 2298880, 34: 2298908, 45: 2299064, 55: 2299092, 66: 2299120, 77: 2299148, 88: 2299204, 95: 2299774, 99
[2025-11-23 16:14:31] 2025-11-23 15:13:32,486 | INFO     | --------------------------------------------------
[2025-11-23 16:14:31] 2025-11-23 15:13:32,486 | INFO     | 
[2025-11-23 16:14:31] 2025-11-23 15:13:32,486 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-23 16:14:31] 2025-11-23 15:13:32,756 | INFO     | time since job start (93836s) is within the limit (172800.0s)
[2025-11-23 16:14:31] 2025-11-23 15:13:32,775 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,775 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 16:14:31] 2025-11-23 15:13:32,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 16:14:31] 2025-11-23 15:13:32,777 | INFO     | job 6892546327 has completed (purged errors)
[2025-11-23 16:14:31] 2025-11-23 15:13:32,777 | INFO     | overall cleanup function is called
[2025-11-23 16:14:31] 2025-11-23 15:13:33,795 | INFO     | --- collectZombieJob: --- 10, [25538]
[2025-11-23 16:14:31] 2025-11-23 15:13:33,795 | INFO     | zombie collector waiting for pid 25538
[2025-11-23 16:14:31] 2025-11-23 15:13:33,795 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 16:14:31] 2025-11-23 15:13:33,795 | INFO     | collected zombie processes
[2025-11-23 16:14:31] 2025-11-23 15:13:33,796 | INFO     | will attempt to kill all subprocesses of pid=25538
[2025-11-23 16:14:31] 2025-11-23 15:13:34,028 | INFO     | PID=18960 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 16:14:31] 2025-11-23 15:13:34,028 | INFO     | .. there are 9 such processes running
[2025-11-23 16:14:31] 2025-11-23 15:13:34,063 | INFO     | process IDs to be killed: [25538] (in reverse order)
[2025-11-23 16:14:31] 2025-11-23 15:13:34,760 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 16:14:31] 2025-11-23 15:13:34,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 16:14:31] 2025-11-23 15:13:34,764 | INFO     | did not find any defunct processes belonging to 25538
[2025-11-23 16:14:31] 2025-11-23 15:13:34,767 | INFO     | did not find any defunct processes belonging to 25538
[2025-11-23 16:14:31] 2025-11-23 15:13:34,828 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 16:14:31] 2025-11-23 15:13:34,829 | INFO     | ready for new job
[2025-11-23 16:14:31] 2025-11-23 15:13:34,829 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 16:14:31] 2025-11-23 15:13:34,835 | INFO     | ***************************************
[2025-11-23 16:14:31] 2025-11-23 15:13:34,835 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 16:14:31] 2025-11-23 15:13:34,835 | INFO     | ***************************************
[2025-11-23 16:14:31] 2025-11-23 15:13:34,836 | INFO     | 
[2025-11-23 16:14:31] 2025-11-23 15:13:34,836 | INFO     | pilot is running in a VM
[2025-11-23 16:14:31] 2025-11-23 15:13:34,836 | INFO     | architecture information:
[2025-11-23 16:14:31] 2025-11-23 15:13:34,851 | INFO     | executing command: cat /etc/os-release
[2025-11-23 16:14:31] 2025-11-23 15:13:35,093 | INFO     | cat /etc/os-release:
[2025-11-23 16:14:31] NAME="CentOS Linux"
[2025-11-23 16:14:31] VERSION="7 (Core)"
[2025-11-23 16:14:31] ID="centos"
[2025-11-23 16:14:31] ID_LIKE="rhel fedora"
[2025-11-23 16:14:31] VERSION_ID="7"
[2025-11-23 16:14:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 16:14:31] ANSI_COLOR="0;31"
[2025-11-23 16:14:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 16:14:31] HOME_URL="https://www.centos.org/"
[2025-11-23 16:14:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 16:14:31] 
[2025-11-23 16:14:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 16:14:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 16:14:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 16:14:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 16:14:31] 
[2025-11-23 16:14:31] 2025-11-23 15:13:35,094 | INFO     | ***************************************
[2025-11-23 16:14:31] 2025-11-23 15:13:35,597 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-23 16:14:31] 2025-11-23 15:13:35,906 | INFO     | sufficient remaining disk space (495260270592 B)
[2025-11-23 16:14:31] 2025-11-23 15:13:35,906 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 16:14:31] 2025-11-23 15:13:35,906 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 16:14:31] 2025-11-23 15:13:35,906 | INFO     | update_server=False
[2025-11-23 16:14:31] 2025-11-23 15:13:35,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 16:14:31] 2025-11-23 15:13:35,914 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:14:31] 2025-11-23 15:13:35,914 | INFO     | aborting loop
[2025-11-23 16:14:31] 2025-11-23 15:13:36,191 | INFO     | all payload control threads have been joined
[2025-11-23 16:14:31] 2025-11-23 15:13:36,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 16:14:31] 2025-11-23 15:13:36,835 | INFO     | all data control threads have been joined
[2025-11-23 16:14:31] 2025-11-23 15:13:36,913 | INFO     | [job] retrieve thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:36,919 | INFO     | [job] job monitor thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:36,955 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:37,006 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:37,197 | INFO     | [payload] control thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:37,228 | INFO     | all job control threads have been joined
[2025-11-23 16:14:31] 2025-11-23 15:13:37,410 | INFO     | [job] validate thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:37,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:14:31] 2025-11-23 15:13:37,589 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:37,687 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:37,841 | INFO     | [data] control thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:37,867 | INFO     | [payload] failed_post thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:37,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 16:14:31] 2025-11-23 15:13:38,020 | INFO     | [data] copytool_in thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:38,114 | INFO     | [payload] validate_post thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:38,234 | INFO     | [job] control thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:38,448 | INFO     | [data] copytool_out thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:38,505 | INFO     | [job] queue monitor thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:13:41,929 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 16:14:31] 2025-11-23 15:14:06,252 | INFO     | PID=18960 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 16:14:31] 2025-11-23 15:14:06,252 | INFO     | .. there are 9 such processes running
[2025-11-23 16:14:31] 2025-11-23 15:14:06,253 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 16:14:31] 2025-11-23 15:14:06,253 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 16:14:31] 2025-11-23 15:14:06,253 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 16:14:31] 2025-11-23 15:14:19,884 | INFO     | [monitor] cgroup control has ended
[2025-11-23 16:14:31] 2025-11-23 15:14:20,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634336552768)>', '<ExcThread(monitor, started 139633597863680)>']
[2025-11-23 16:14:31] 2025-11-23 15:14:21,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 16:14:31] 2025-11-23 15:14:21,341 | INFO     | [monitor] control thread has ended
[2025-11-23 16:14:31] 2025-11-23 15:14:25,790 | INFO     | all workflow threads have been joined
[2025-11-23 16:14:31] 2025-11-23 15:14:25,790 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 16:14:31] 2025-11-23 15:14:25,791 | INFO     | traces error code: 0
[2025-11-23 16:14:31] 2025-11-23 15:14:25,791 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 16:14:31] 2025-11-23 15:14:26,199 [wrapper] ==== pilot stdout END ====
[2025-11-23 16:14:31] 2025-11-23 15:14:26,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 16:14:31] 2025-11-23 15:14:26,396 [wrapper] pilotpid: 18960
[2025-11-23 16:14:31] 2025-11-23 15:14:26,491 [wrapper] Pilot exit status: 0
[2025-11-23 16:14:31] 2025-11-23 15:14:26,922 [wrapper] pandaids: 6892546327
[2025-11-23 16:14:31] 2025-11-23 15:14:28,063 [wrapper] cleanup supervisor_pilot 24019 18961
[2025-11-23 16:14:31] 2025-11-23 15:14:28,162 [wrapper] Test setup, not cleaning
[2025-11-23 16:14:31] 2025-11-23 15:14:28,214 [wrapper] apfmon messages muted
[2025-11-23 16:14:31] 2025-11-23 15:14:28,310 [wrapper] ==== wrapper stdout END ====
[2025-11-23 16:14:31] 2025-11-23 15:14:28,401 [wrapper] ==== wrapper stderr END ====
[2025-11-23 16:14:31]  *** Error codes and diagnostics ***
[2025-11-23 16:14:31]     "exeErrorCode": 0,
[2025-11-23 16:14:31]     "exeErrorDiag": "",
[2025-11-23 16:14:31]     "pilotErrorCode": 0,
[2025-11-23 16:14:31]     "pilotErrorDiag": "",
[2025-11-23 16:14:31]  *** Listing of results directory ***
[2025-11-23 16:14:31] total 1329948
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc    576529 Nov 19 09:16 pilot3.tar.gz
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc      5112 Nov 19 09:23 queuedata.json
[2025-11-23 16:14:31] -rwx------. 1 boinc boinc     36292 Nov 19 09:23 runpilot2-wrapper.sh
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc       100 Nov 22 14:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 16:14:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 14:05 run_atlas
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc       105 Nov 22 14:05 job.xml
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc      6391 Nov 22 14:05 init_data.xml
[2025-11-23 16:14:31] -rw-r--r--. 2 boinc boinc 410000079 Nov 22 14:05 EVNT.47493027._000297.pool.root.1
[2025-11-23 16:14:31] -rw-r--r--. 2 boinc boinc     15120 Nov 22 14:05 start_atlas.sh
[2025-11-23 16:14:31] drwxrwx--x. 2 boinc boinc        68 Nov 22 14:05 shared
[2025-11-23 16:14:31] -rw-r--r--. 2 boinc boinc    590098 Nov 22 14:05 input.tar.gz
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc         0 Nov 22 14:05 boinc_lockfile
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc      2773 Nov 22 14:05 pandaJob.out
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc    989768 Nov 22 14:09 agis_schedconf.cvmfs.json
[2025-11-23 16:14:31] drwx------. 5 boinc boinc      4096 Nov 22 14:09 pilot3
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc       533 Nov 23 15:45 boinc_task_state.xml
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc 917696896 Nov 23 16:10 HITS.47493029._002926.pool.root.1
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc      1030 Nov 23 16:11 memory_monitor_summary.json
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc   1526164 Nov 23 16:12 agis_ddmendpoints.agis.ALL.json
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc   2601320 Nov 23 16:12 log.47493029._002926.job.log.tgz.1
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc      8642 Nov 23 16:13 heartbeat.json
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc        95 Nov 23 16:13 pilot_heartbeat.json
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc      4884 Nov 23 16:14 pilotlog.txt
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc  12527470 Nov 23 16:14 log.47493029._002926.job.log.1
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc        29 Nov 23 16:14 wrapper_checkpoint.txt
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc      8192 Nov 23 16:14 boinc_mmap_file
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc       353 Nov 23 16:14 output.list
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc       620 Nov 23 16:14 runtime_log
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc  15144960 Nov 23 16:14 result.tar.gz
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc      8703 Nov 23 16:14 runtime_log.err
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc       662 Nov 23 16:14 eEXKDmzesf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmU1GKDmRaSiFm.diag
[2025-11-23 16:14:31] -rw-r--r--. 1 boinc boinc     21505 Nov 23 16:14 stderr.txt
[2025-11-23 16:14:31] HITS file was successfully produced:
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc 917696896 Nov 23 16:10 shared/HITS.pool.root.1
[2025-11-23 16:14:31]  *** Contents of shared directory: ***
[2025-11-23 16:14:31] total 1311972
[2025-11-23 16:14:31] -rw-r--r--. 2 boinc boinc 410000079 Nov 22 14:05 ATLAS.root_0
[2025-11-23 16:14:31] -rw-r--r--. 2 boinc boinc     15120 Nov 22 14:05 start_atlas.sh
[2025-11-23 16:14:31] -rw-r--r--. 2 boinc boinc    590098 Nov 22 14:05 input.tar.gz
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc 917696896 Nov 23 16:10 HITS.pool.root.1
[2025-11-23 16:14:31] -rw-------. 1 boinc boinc  15144960 Nov 23 16:14 result.tar.gz
16:14:33 (15171): run_atlas exited; CPU time 335857.311767
16:14:33 (15171): called boinc_finish(0)

</stderr_txt>
]]>

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