Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-19 15:48:10 (18688): vboxwrapper version 26210
2025-11-19 15:48:10 (18688): BOINC client version: 8.2.4
2025-11-19 15:48:11 (18688): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-11-19 15:48:12 (18688): Successfully copied 'init_data.xml' to the shared directory.
2025-11-19 15:48:12 (18688): Create VM. (boinc_86e45b7917064055, slot#21)
2025-11-19 15:48:12 (18688): Setting Memory Size for VM. (4400MB)
2025-11-19 15:48:13 (18688): Setting CPU Count for VM. (4)
2025-11-19 15:48:13 (18688): Setting Chipset Options for VM.
2025-11-19 15:48:13 (18688): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-19 15:48:14 (18688): Setting Boot Options for VM.
2025-11-19 15:48:14 (18688): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-19 15:48:14 (18688): Enabling VM Network Access.
2025-11-19 15:48:15 (18688): Disabling USB Support for VM.
2025-11-19 15:48:15 (18688): Disabling COM Port Support for VM.
2025-11-19 15:48:15 (18688): Disabling LPT Port Support for VM.
2025-11-19 15:48:15 (18688): Disabling Audio Support for VM.
2025-11-19 15:48:16 (18688): Disabling Clipboard Support for VM.
2025-11-19 15:48:16 (18688): Disabling Drag and Drop Support for VM.
2025-11-19 15:48:16 (18688): Adding storage controller(s) to VM.
2025-11-19 15:48:16 (18688): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-19 15:48:18 (18688): Adding VirtualBox Guest Additions to VM.
2025-11-19 15:48:18 (18688): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-19 15:48:18 (18688): forwarding host port 61848 to guest port 80
2025-11-19 15:48:18 (18688): Enabling remote desktop for VM.
2025-11-19 15:48:19 (18688): Enabling shared directory for VM.
2025-11-19 15:48:20 (18688): Starting VM using VBoxManage interface. (boinc_86e45b7917064055, slot#21)
2025-11-19 15:48:25 (18688): Successfully started VM. (PID = '23792')
2025-11-19 15:48:25 (18688): Reporting VM Process ID to BOINC.
2025-11-19 15:48:25 (18688): Guest Log: BIOS: VirtualBox 7.1.8
2025-11-19 15:48:25 (18688): Guest Log: CPUID EDX: 0x178bfbff
2025-11-19 15:48:25 (18688): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-19 15:48:25 (18688): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-19 15:48:25 (18688): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-19 15:48:25 (18688): Detected: Web Application Enabled (http://localhost:61848)
2025-11-19 15:48:25 (18688): Detected: Remote Desktop Enabled (localhost:61849)
2025-11-19 15:48:25 (18688): Preference change detected
2025-11-19 15:48:25 (18688): Setting CPU throttle for VM. (100%)
2025-11-19 15:48:25 (18688): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-19 15:48:27 (18688): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-19 15:48:27 (18688): Guest Log: BIOS: Booting from Hard Disk...
2025-11-19 15:48:29 (18688): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-19 15:48:29 (18688): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-19 15:48:29 (18688): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-19 15:48:42 (18688): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-19 15:48:42 (18688): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-19 15:48:45 (18688): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-19 15:48:45 (18688): Guest Log: 00:00:00.000099 main     Log opened 2025-11-19T15:48:43.528031000Z
2025-11-19 15:48:45 (18688): Guest Log: 00:00:00.000177 main     OS Product: Linux
2025-11-19 15:48:45 (18688): Guest Log: 00:00:00.000193 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-19 15:48:45 (18688): Guest Log: 00:00:00.000205 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-19 15:48:45 (18688): Guest Log: 00:00:00.000217 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-19 15:48:45 (18688): Guest Log: 00:00:00.000218 main     Process ID: 1316
2025-11-19 15:48:45 (18688): Guest Log: 00:00:00.000218 main     Package type: LINUX_64BITS_GENERIC
2025-11-19 15:48:45 (18688): Guest Log: 00:00:00.000848 main     5.2.32 r132073 started. Verbose level = 0
2025-11-19 15:48:45 (18688): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-19 15:48:45 (18688): Guest Log: [INFO] Mounting shared directory
2025-11-19 15:48:45 (18688): Guest Log: [INFO] Checking for init_data.xml
2025-11-19 15:48:47 (18688): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-19 15:48:47 (18688): Guest Log: [INFO] Detected branch: prod
2025-11-19 15:48:47 (18688): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-19 15:48:47 (18688): Guest Log: Copying input files
2025-11-19 15:48:48 (18688): Guest Log: Copied input files into RunAtlas.
2025-11-19 15:48:48 (18688): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-19 15:48:48 (18688): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-19 15:48:48 (18688): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-19 15:48:48 (18688): Guest Log: Further information can be found at the LHC@home message board.
2025-11-19 15:48:55 (18688): Guest Log: 00:00:10.002149 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 598 024 302 000ns (GuestNow=1 763 563 725 505 348 000 ns GuestLast=1 763 567 323 529 650 000 ns fSetTimeLastLoop=true )
2025-11-19 15:49:02 (18688): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-19 15:49:02 (18688): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-19 15:49:02 (18688): Guest Log: 2.6.3.0 1590 0 32204 153047 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-19 15:49:02 (18688): Guest Log: copied the webapp to /var/www
2025-11-19 15:49:02 (18688): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-19 15:49:02 (18688): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-19 15:49:02 (18688): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-19 15:49:02 (18688): Guest Log:  *** Starting ATLAS job. (PandaID=6892544854 taskID=47493029) ***
2025-11-19 15:59:08 (18688): Guest Log:  *** Job finished ***
2025-11-19 15:59:08 (18688): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:46,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:46,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:52,181 | INFO     | [monitor] cgroup control has ended
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:53,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139774687135552)>', '<ExcThread(monitor, started 139773595346688)>']
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:54,102 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:54,102 | INFO     | [monitor] control thread has ended
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,214 | INFO     | all workflow threads have been joined
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,214 | INFO     | end of generic workflow (traces error code: 0)
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,214 | INFO     | traces error code: 0
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,293 [wrapper] ==== pilot stdout END ====
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,295 [wrapper] ==== wrapper stdout RESUME ====
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,298 [wrapper] pilotpid: 6004
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,300 [wrapper] Pilot exit status: 0
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,307 [wrapper] pandaids: 6892544854
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,322 [wrapper] cleanup supervisor_pilot  6010 6005
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,325 [wrapper] Test setup, not cleaning
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,327 [wrapper] apfmon messages muted
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,329 [wrapper] ==== wrapper stdout END ====
2025-11-19 15:59:08 (18688): Guest Log: 2025-11-19 14:58:58,332 [wrapper] ==== wrapper stderr END ====
2025-11-19 15:59:08 (18688): Guest Log:  *** Error codes and diagnostics ***
2025-11-19 15:59:08 (18688): Guest Log:     "exeErrorCode": 65,
2025-11-19 15:59:08 (18688): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2025-11-19 15:59:08 (18688): Guest Log:     "pilotErrorCode": 1305,
2025-11-19 15:59:08 (18688): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
2025-11-19 15:59:08 (18688): Guest Log:  *** Listing of results directory ***
2025-11-19 15:59:08 (18688): Guest Log: total 4180
2025-11-19 15:59:08 (18688): Guest Log: -rwx------. 1 atlas atlas   36292 Nov 19 08:16 runpilot2-wrapper.sh
2025-11-19 15:59:08 (18688): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Nov 19 08:16 queuedata.json
2025-11-19 15:59:08 (18688): Guest Log: -rw-r--r--. 1 atlas atlas  576529 Nov 19 08:16 pilot3.tar.gz
2025-11-19 15:59:08 (18688): Guest Log: -rwxr-xr-x. 1 atlas atlas    8817 Nov 19 14:48 init_data.xml
2025-11-19 15:59:08 (18688): Guest Log: -rwxr-xr-x. 1 atlas atlas  590098 Nov 19 14:48 input.tar.gz
2025-11-19 15:59:08 (18688): Guest Log: -rwxr-xr-x. 1 atlas atlas   15120 Nov 19 14:48 start_atlas.sh
2025-11-19 15:59:08 (18688): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov 19 14:48 EVNT.47493027._000286.pool.root.1 -> /data/./ATLAS.root_0
2025-11-19 15:59:08 (18688): Guest Log: -rw-r--r--. 1 atlas atlas    2773 Nov 19 14:48 pandaJob.out
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas  989442 Nov 19 14:49 agis_schedconf.cvmfs.json
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas 1525063 Nov 19 14:49 agis_ddmendpoints.agis.ALL.json
2025-11-19 15:59:08 (18688): Guest Log: drwx------. 5 atlas atlas    4096 Nov 19 14:49 pilot3
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas    1019 Nov 19 14:56 memory_monitor_summary.json
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas   86014 Nov 19 14:56 log.47493029._002816.job.log.tgz.1
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas      95 Nov 19 14:57 pilot_heartbeat.json
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas    9178 Nov 19 14:58 heartbeat.json
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas    4805 Nov 19 14:58 pilotlog.txt
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas  127860 Nov 19 14:58 log.47493029._002816.job.log.1
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas     186 Nov 19 14:58 output.list
2025-11-19 15:59:08 (18688): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov 19 14:58 runtime_log
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas  235520 Nov 19 14:58 result.tar.gz
2025-11-19 15:59:08 (18688): Guest Log: -rw-r--r--. 1 atlas atlas    8479 Nov 19 14:58 runtime_log.err
2025-11-19 15:59:08 (18688): Guest Log: -rw-------. 1 atlas atlas     644 Nov 19 14:58 qjfLDmDYsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmE5FKDmOvYAan.diag
2025-11-19 15:59:08 (18688): Guest Log: Looking for outputfile HITS.47493029._002816.pool.root.1
2025-11-19 15:59:08 (18688): Guest Log: No HITS file was produced
2025-11-19 15:59:08 (18688): Guest Log: Successfully finished the ATLAS job!
2025-11-19 15:59:08 (18688): Guest Log: Copying the results back to the shared directory!
2025-11-19 15:59:08 (18688): Guest Log:  *** Contents of shared directory: ***
2025-11-19 15:59:08 (18688): Guest Log: total 402400
2025-11-19 15:59:08 (18688): Guest Log: -rwxrwxrwx. 1 root root 411194991 Nov 19 14:48 ATLAS.root_0
2025-11-19 15:59:08 (18688): Guest Log: -rwxrwxrwx. 1 root root      8817 Nov 19 14:48 init_data.xml
2025-11-19 15:59:08 (18688): Guest Log: -rwxrwxrwx. 1 root root    590098 Nov 19 14:43 input.tar.gz
2025-11-19 15:59:08 (18688): Guest Log: -rwxrwxrwx. 1 root root    235520 Nov 19  2025 result.tar.gz
2025-11-19 15:59:08 (18688): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 14:43 start_atlas.sh
2025-11-19 15:59:08 (18688): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-19 15:59:08 (18688): VM Completion File Detected.
2025-11-19 15:59:08 (18688): Powering off VM.
2025-11-19 15:59:08 (18688): Successfully stopped VM.
2025-11-19 15:59:08 (18688): Deregistering VM. (boinc_86e45b7917064055, slot#21)
2025-11-19 15:59:08 (18688): Removing network bandwidth throttle group from VM.
2025-11-19 15:59:09 (18688): Removing VM from VirtualBox.
2025-11-19 15:59:14 (18688): called boinc_finish(0)

</stderr_txt>
]]>

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