Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
23:39:37 (4020354): wrapper (7.7.26015): starting
23:39:37 (4020354): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 23:39:37] Arguments: --nthreads 12
[2025-11-23 23:39:37] Threads: 12
[2025-11-23 23:39:37] Checking for CVMFS
[2025-11-23 23:39:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:39:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:39:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:39:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:39:40] 2.13.0.0 2291514 7322 168544 153226 0 109 4082066 4096000 11800 130560 0 43282131 99.982 921093 597 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-23 23:39:40] CVMFS is ok
[2025-11-23 23:39:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:39:40] Checking for apptainer binary...
[2025-11-23 23:39:40] apptainer is not installed, using version from CVMFS
[2025-11-23 23:39:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:39:45] epyc7v12
[2025-11-23 23:39:45] apptainer works
[2025-11-23 23:39:45] Set ATHENA_PROC_NUMBER=12
[2025-11-23 23:39:45] Set ATHENA_CORE_NUMBER=12
[2025-11-23 23:39:45] Starting ATLAS job with PandaID=6891586525
[2025-11-23 23:39:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31420/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 09:38:10]  *** The last 200 lines of the pilot log: ***
[2025-11-24 09:38:10] 2025-11-24 09:37:21,099 | INFO     | time since job start (35784s) is within the limit (172800.0s)
[2025-11-24 09:38:10] 2025-11-24 09:37:22,459 | INFO     | monitor loop #2170: job 0:6891586525 is in state 'finished'
[2025-11-24 09:38:10] 2025-11-24 09:37:22,459 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 09:38:10] 2025-11-24 09:37:23,637 | INFO     | PID=4034613 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 09:38:10] 2025-11-24 09:37:23,637 | INFO     | .. there are 18 such processes running
[2025-11-24 09:38:10] 2025-11-24 09:37:24,637 | INFO     | time since job start (35787s) is within the limit (172800.0s)
[2025-11-24 09:38:10] 2025-11-24 09:37:24,963 | INFO     | monitor loop #2171: job 0:6891586525 is in state 'finished'
[2025-11-24 09:38:10] 2025-11-24 09:37:24,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 09:38:10] 2025-11-24 09:37:26,655 | INFO     | time since job start (35789s) is within the limit (172800.0s)
[2025-11-24 09:38:10] 2025-11-24 09:37:27,479 | INFO     | monitor loop #2172: job 0:6891586525 is in state 'finished'
[2025-11-24 09:38:10] 2025-11-24 09:37:27,483 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 09:38:10] 2025-11-24 09:37:28,663 | INFO     | time since job start (35791s) is within the limit (172800.0s)
[2025-11-24 09:38:10] 2025-11-24 09:37:29,993 | INFO     | monitor loop #2173: job 0:6891586525 is in state 'finished'
[2025-11-24 09:38:10] 2025-11-24 09:37:29,994 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 09:38:10] 2025-11-24 09:37:30,671 | INFO     | time since job start (35793s) is within the limit (172800.0s)
[2025-11-24 09:38:10] 2025-11-24 09:37:30,964 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 09:38:10] 2025-11-24 09:37:30,992 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2394.1589687500004
[2025-11-24 09:38:10] 2025-11-24 09:37:31,052 | INFO     | using path: /opt/boinc/instance_homes/boinc_31420/slots/0/PanDA_Pilot-6891586525/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 09:38:10] 2025-11-24 09:37:31,053 | INFO     | extracted standard info from prmon json
[2025-11-24 09:38:10] 2025-11-24 09:37:31,053 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 09:38:10] 2025-11-24 09:37:31,053 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 09:38:10] 2025-11-24 09:37:31,064 | INFO     | fitting pss+swap vs Time
[2025-11-24 09:38:10] 2025-11-24 09:37:31,064 | INFO     | sum of square deviations: 61763276588.8614
[2025-11-24 09:38:10] 2025-11-24 09:37:31,073 | INFO     | sum of deviations: -1006539499757.5409
[2025-11-24 09:38:10] 2025-11-24 09:37:31,074 | INFO     | mean x: 1763959105.234589
[2025-11-24 09:38:10] 2025-11-24 09:37:31,074 | INFO     | mean y: 3274223.828767123
[2025-11-24 09:38:10] 2025-11-24 09:37:31,074 | INFO     | intersect: 28750041128.610847
[2025-11-24 09:38:10] 2025-11-24 09:37:31,075 | INFO     | chi2: 38.2121207168658
[2025-11-24 09:38:10] 2025-11-24 09:37:31,075 | INFO     | sum of square deviations: 60190793258.68748
[2025-11-24 09:38:10] 2025-11-24 09:37:31,084 | INFO     | sum of deviations: -774325989627.2544
[2025-11-24 09:38:10] 2025-11-24 09:37:31,084 | INFO     | mean x: 1763958952.7495682
[2025-11-24 09:38:10] 2025-11-24 09:37:31,084 | INFO     | mean y: 3296735.9844559585
[2025-11-24 09:38:10] 2025-11-24 09:37:31,085 | INFO     | intersect: 22695791514.70253
[2025-11-24 09:38:10] 2025-11-24 09:37:31,085 | INFO     | chi2: 33.84623816744054
[2025-11-24 09:38:10] 2025-11-24 09:37:31,085 | INFO     | current chi2=33.84623816744054 (change=11.425386677108124 %)
[2025-11-24 09:38:10] 2025-11-24 09:37:31,086 | INFO     | right removable region: 578
[2025-11-24 09:38:10] 2025-11-24 09:37:31,086 | INFO     | sum of square deviations: 60190246091.678795
[2025-11-24 09:38:10] 2025-11-24 09:37:31,107 | INFO     | sum of deviations: -1198617272645.7776
[2025-11-24 09:38:10] 2025-11-24 09:37:31,108 | INFO     | mean x: 1763959257.746114
[2025-11-24 09:38:10] 2025-11-24 09:37:31,108 | INFO     | mean y: 3292811.98791019
[2025-11-24 09:38:10] 2025-11-24 09:37:31,108 | INFO     | intersect: 35130446659.43193
[2025-11-24 09:38:10] 2025-11-24 09:37:31,109 | INFO     | chi2: 36.01263432624246
[2025-11-24 09:38:10] 2025-11-24 09:37:31,109 | INFO     | current chi2=36.01263432624246 (change=5.755991421990198 %)
[2025-11-24 09:38:10] 2025-11-24 09:37:31,109 | INFO     | left removable region: 10
[2025-11-24 09:38:10] 2025-11-24 09:37:31,110 | INFO     | sum of square deviations: 56824947808.38725
[2025-11-24 09:38:10] 2025-11-24 09:37:31,122 | INFO     | sum of deviations: -967608993982.5005
[2025-11-24 09:38:10] 2025-11-24 09:37:31,122 | INFO     | mean x: 1763959227.2640846
[2025-11-24 09:38:10] 2025-11-24 09:37:31,127 | INFO     | mean y: 3325385.75
[2025-11-24 09:38:10] 2025-11-24 09:37:31,127 | INFO     | intersect: 30039830110.303852
[2025-11-24 09:38:10] 2025-11-24 09:37:31,128 | INFO     | chi2: 30.59510226851568
[2025-11-24 09:38:10] 2025-11-24 09:37:31,128 | INFO     | current memory leak: -17.03 B/s (using 568 data points, chi2=30.60)
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | could have reported an average CPU frequency of 2395 MHz (22 samples)
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | ..............................
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | . Timing measurements:
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | . get job = 0 s
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | . initial setup = 2 s
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | . payload setup = 11 s
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | . stage-in = 0 s
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | . payload execution = 35597 s
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | . stage-out = 7 s
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | . log creation = 3 s
[2025-11-24 09:38:10] 2025-11-24 09:37:31,129 | INFO     | ..............................
[2025-11-24 09:38:10] 2025-11-24 09:37:31,376 | INFO     | 
[2025-11-24 09:38:10] 2025-11-24 09:37:31,376 | INFO     | job summary report
[2025-11-24 09:38:10] 2025-11-24 09:37:31,376 | INFO     | --------------------------------------------------
[2025-11-24 09:38:10] 2025-11-24 09:37:31,376 | INFO     | PanDA job id: 6891586525
[2025-11-24 09:38:10] 2025-11-24 09:37:31,376 | INFO     | task id: 47493068
[2025-11-24 09:38:10] 2025-11-24 09:37:31,376 | INFO     | errors: (none)
[2025-11-24 09:38:10] 2025-11-24 09:37:31,376 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 09:38:10] 2025-11-24 09:37:31,376 | INFO     | pilot state: finished 
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | transexitcode: 0
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | exeerrorcode: 0
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | exeerrordiag: 
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | exitcode: 0
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | exitmsg: OK
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | cpuconsumptiontime: 260074 s
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | nevents: 1000
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | neventsw: 0
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | pid: 4058102
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | pgrp: 4058102
[2025-11-24 09:38:10] 2025-11-24 09:37:31,377 | INFO     | corecount: 12
[2025-11-24 09:38:10] 2025-11-24 09:37:31,378 | INFO     | event service: False
[2025-11-24 09:38:10] 2025-11-24 09:37:31,378 | INFO     | sizes: {0: 2298648, 1: 2298847, 12: 2298847, 14: 2299137, 22: 2299165, 35614: 2340446, 35622: 2349542, 35755: 2349732}
[2025-11-24 09:38:10] 2025-11-24 09:37:31,378 | INFO     | --------------------------------------------------
[2025-11-24 09:38:10] 2025-11-24 09:37:31,378 | INFO     | 
[2025-11-24 09:38:10] 2025-11-24 09:37:31,378 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31420/slots/0
[2025-11-24 09:38:10] 2025-11-24 09:37:32,160 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,160 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,160 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,160 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,161 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,161 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,161 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,161 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,161 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,161 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,161 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,161 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,162 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,162 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,162 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,162 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,162 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,162 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 09:38:10] 2025-11-24 09:37:32,162 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,162 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 09:38:10] 2025-11-24 09:37:32,163 | INFO     | job 6891586525 has completed (purged errors)
[2025-11-24 09:38:10] 2025-11-24 09:37:32,163 | INFO     | overall cleanup function is called
[2025-11-24 09:38:10] 2025-11-24 09:37:33,211 | INFO     | --- collectZombieJob: --- 10, [4058102]
[2025-11-24 09:38:10] 2025-11-24 09:37:33,211 | INFO     | zombie collector waiting for pid 4058102
[2025-11-24 09:38:10] 2025-11-24 09:37:33,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 09:38:10] 2025-11-24 09:37:33,211 | INFO     | collected zombie processes
[2025-11-24 09:38:10] 2025-11-24 09:37:33,211 | INFO     | will attempt to kill all subprocesses of pid=4058102
[2025-11-24 09:38:10] 2025-11-24 09:37:34,573 | INFO     | process IDs to be killed: [4058102] (in reverse order)
[2025-11-24 09:38:10] 2025-11-24 09:37:43,265 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 09:38:10] 2025-11-24 09:37:43,265 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 09:38:10] 2025-11-24 09:37:43,285 | INFO     | did not find any defunct processes belonging to 4058102
[2025-11-24 09:38:10] 2025-11-24 09:37:43,305 | INFO     | did not find any defunct processes belonging to 4058102
[2025-11-24 09:38:10] 2025-11-24 09:37:43,395 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 09:38:10] 2025-11-24 09:37:43,395 | INFO     | ready for new job
[2025-11-24 09:38:10] 2025-11-24 09:37:43,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 09:38:10] 2025-11-24 09:37:43,399 | INFO     | ***************************************
[2025-11-24 09:38:10] 2025-11-24 09:37:43,400 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 09:38:10] 2025-11-24 09:37:43,400 | INFO     | ***************************************
[2025-11-24 09:38:10] 2025-11-24 09:37:43,400 | INFO     | 
[2025-11-24 09:38:10] 2025-11-24 09:37:43,442 | INFO     | architecture information:
[2025-11-24 09:38:10] 2025-11-24 09:37:43,451 | INFO     | executing command: cat /etc/os-release
[2025-11-24 09:38:10] 2025-11-24 09:37:43,731 | INFO     | cat /etc/os-release:
[2025-11-24 09:38:10] NAME="CentOS Linux"
[2025-11-24 09:38:10] VERSION="7 (Core)"
[2025-11-24 09:38:10] ID="centos"
[2025-11-24 09:38:10] ID_LIKE="rhel fedora"
[2025-11-24 09:38:10] VERSION_ID="7"
[2025-11-24 09:38:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 09:38:10] ANSI_COLOR="0;31"
[2025-11-24 09:38:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 09:38:10] HOME_URL="https://www.centos.org/"
[2025-11-24 09:38:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 09:38:10] 
[2025-11-24 09:38:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 09:38:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 09:38:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 09:38:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 09:38:10] 
[2025-11-24 09:38:10] 2025-11-24 09:37:43,732 | INFO     | ***************************************
[2025-11-24 09:38:10] 2025-11-24 09:37:44,235 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31420/slots/0
[2025-11-24 09:38:10] 2025-11-24 09:37:44,629 | INFO     | sufficient remaining disk space (324391665664 B)
[2025-11-24 09:38:10] 2025-11-24 09:37:44,629 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 09:38:10] 2025-11-24 09:37:44,629 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 09:38:10] 2025-11-24 09:37:44,629 | INFO     | update_server=False
[2025-11-24 09:38:10] 2025-11-24 09:37:44,629 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 09:38:10] 2025-11-24 09:37:44,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 09:38:10] 2025-11-24 09:37:44,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 09:38:10] 2025-11-24 09:37:44,955 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 09:38:10] 2025-11-24 09:37:45,071 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 09:38:10] 2025-11-24 09:37:45,071 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 09:38:10] 2025-11-24 09:37:45,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 09:38:10] 2025-11-24 09:37:45,071 | INFO     | will abort loop
[2025-11-24 09:38:10] 2025-11-24 09:37:45,535 | INFO     | all data control threads have been joined
[2025-11-24 09:38:10] 2025-11-24 09:37:45,579 | INFO     | all payload control threads have been joined
[2025-11-24 09:38:10] 2025-11-24 09:37:45,635 | INFO     | [job] retrieve thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:45,639 | INFO     | [job] queue monitor thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:45,739 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:45,959 | INFO     | [data] copytool_in thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:45,959 | INFO     | [job] validate thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:46,031 | INFO     | [payload] validate_post thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:46,075 | INFO     | [job] job monitor thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:46,287 | INFO     | all job control threads have been joined
[2025-11-24 09:38:10] 2025-11-24 09:37:46,387 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:46,399 | INFO     | [payload] failed_post thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:46,543 | INFO     | [data] control thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:46,571 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:46,587 | INFO     | [payload] control thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:46,895 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:46,895 | INFO     | [data] copytool_out thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:47,295 | INFO     | [job] control thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:48,971 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 09:38:10] 2025-11-24 09:37:57,643 | INFO     | [monitor] cgroup control has ended
[2025-11-24 09:38:10] 2025-11-24 09:37:58,743 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928479455040)>', '<ExcThread(monitor, started 139928188991232)>']
[2025-11-24 09:38:10] 2025-11-24 09:38:03,771 | INFO     | all workflow threads have been joined
[2025-11-24 09:38:10] 2025-11-24 09:38:03,771 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 09:38:10] 2025-11-24 09:38:03,771 | INFO     | traces error code: 0
[2025-11-24 09:38:10] 2025-11-24 09:38:03,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 09:38:10] 2025-11-24 09:38:05,096 | INFO     | PID=4034613 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 09:38:10] 2025-11-24 09:38:05,096 | INFO     | .. there are 18 such processes running
[2025-11-24 09:38:10] 2025-11-24 09:38:05,096 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 09:38:10] 2025-11-24 09:38:05,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 09:38:10] 2025-11-24 09:38:05,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 09:38:10] 2025-11-24 09:38:05,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 09:38:10] 2025-11-24 09:38:05,097 | INFO     | [monitor] control thread has ended
[2025-11-24 09:38:10] 2025-11-24 09:38:05,395 [wrapper] ==== pilot stdout END ====
[2025-11-24 09:38:10] 2025-11-24 09:38:05,471 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 09:38:10] 2025-11-24 09:38:05,639 [wrapper] pilotpid: 4034613
[2025-11-24 09:38:10] 2025-11-24 09:38:05,835 [wrapper] Pilot exit status: 0
[2025-11-24 09:38:10] 2025-11-24 09:38:06,427 [wrapper] pandaids: 6891586525
[2025-11-24 09:38:10] 2025-11-24 09:38:07,603 [wrapper] cleanup supervisor_pilot 1001920 4034614
[2025-11-24 09:38:10] 2025-11-24 09:38:07,687 [wrapper] Test setup, not cleaning
[2025-11-24 09:38:10] 2025-11-24 09:38:07,787 [wrapper] apfmon messages muted
[2025-11-24 09:38:10] 2025-11-24 09:38:07,899 [wrapper] ==== wrapper stdout END ====
[2025-11-24 09:38:10] 2025-11-24 09:38:08,003 [wrapper] ==== wrapper stderr END ====
[2025-11-24 09:38:10]  *** Error codes and diagnostics ***
[2025-11-24 09:38:10]     "exeErrorCode": 0,
[2025-11-24 09:38:10]     "exeErrorDiag": "",
[2025-11-24 09:38:10]     "pilotErrorCode": 0,
[2025-11-24 09:38:10]     "pilotErrorDiag": "",
[2025-11-24 09:38:10]  *** Listing of results directory ***
[2025-11-24 09:38:10] total 1316612
[2025-11-24 09:38:10] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:24 pilot3.tar.gz
[2025-11-24 09:38:10] -rwx------ 1 boinc boinc     36292 Nov 18 17:32 runpilot2-wrapper.sh
[2025-11-24 09:38:10] -rw-r--r-- 1 boinc boinc      5112 Nov 18 17:32 queuedata.json
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc       100 Nov 23 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 09:38:10] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 23:39 run_atlas
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc       105 Nov 23 23:39 job.xml
[2025-11-24 09:38:10] -rw-r--r-- 2 boinc boinc 411031329 Nov 23 23:39 EVNT.47493065._000495.pool.root.1
[2025-11-24 09:38:10] -rw-r--r-- 2 boinc boinc     15120 Nov 23 23:39 start_atlas.sh
[2025-11-24 09:38:10] drwxrwx--x 2 boinc boinc      4096 Nov 23 23:39 shared
[2025-11-24 09:38:10] -rw-r--r-- 2 boinc boinc    590097 Nov 23 23:39 input.tar.gz
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc      6592 Nov 23 23:39 init_data.xml
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc         0 Nov 23 23:39 boinc_setup_complete
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc         0 Nov 23 23:39 boinc_lockfile
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc      2773 Nov 23 23:39 pandaJob.out
[2025-11-24 09:38:10] -rw------- 1 boinc boinc    989786 Nov 23 23:40 agis_schedconf.cvmfs.json
[2025-11-24 09:38:10] drwx------ 5 boinc boinc      4096 Nov 23 23:40 pilot3
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc       533 Nov 24 08:50 boinc_task_state.xml
[2025-11-24 09:38:10] -rw------- 1 boinc boinc 919335868 Nov 24 09:33 HITS.47493068._004946.pool.root.1
[2025-11-24 09:38:10] -rw------- 1 boinc boinc      1037 Nov 24 09:35 memory_monitor_summary.json
[2025-11-24 09:38:10] -rw------- 1 boinc boinc   1526164 Nov 24 09:35 agis_ddmendpoints.agis.ALL.json
[2025-11-24 09:38:10] -rw------- 1 boinc boinc   2263874 Nov 24 09:35 log.47493068._004946.job.log.tgz.1
[2025-11-24 09:38:10] -rw------- 1 boinc boinc        95 Nov 24 09:37 pilot_heartbeat.json
[2025-11-24 09:38:10] -rw------- 1 boinc boinc      8570 Nov 24 09:37 heartbeat.json
[2025-11-24 09:38:10] -rw------- 1 boinc boinc       823 Nov 24 09:38 pilotlog.txt
[2025-11-24 09:38:10] -rw------- 1 boinc boinc   4696076 Nov 24 09:38 log.47493068._004946.job.log.1
[2025-11-24 09:38:10] -rw------- 1 boinc boinc       353 Nov 24 09:38 output.list
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc        29 Nov 24 09:38 wrapper_checkpoint.txt
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc       620 Nov 24 09:38 runtime_log
[2025-11-24 09:38:10] -rw------- 1 boinc boinc   6983680 Nov 24 09:38 result.tar.gz
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc      8192 Nov 24 09:38 boinc_mmap_file
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc      9008 Nov 24 09:38 runtime_log.err
[2025-11-24 09:38:10] -rw------- 1 boinc boinc       660 Nov 24 09:38 UAoMDmgkef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmz4FKDmKZw7Bn.diag
[2025-11-24 09:38:10] -rw-rw-r-- 1 boinc boinc     21605 Nov 24 09:38 stderr.txt
[2025-11-24 09:38:10] HITS file was successfully produced:
[2025-11-24 09:38:10] -rw------- 1 boinc boinc 919335868 Nov 24 09:33 shared/HITS.pool.root.1
[2025-11-24 09:38:10]  *** Contents of shared directory: ***
[2025-11-24 09:38:10] total 1306616
[2025-11-24 09:38:10] -rw-r--r-- 2 boinc boinc 411031329 Nov 23 23:39 ATLAS.root_0
[2025-11-24 09:38:10] -rw-r--r-- 2 boinc boinc     15120 Nov 23 23:39 start_atlas.sh
[2025-11-24 09:38:10] -rw-r--r-- 2 boinc boinc    590097 Nov 23 23:39 input.tar.gz
[2025-11-24 09:38:10] -rw------- 1 boinc boinc 919335868 Nov 24 09:33 HITS.pool.root.1
[2025-11-24 09:38:10] -rw------- 1 boinc boinc   6983680 Nov 24 09:38 result.tar.gz
09:38:11 (4020354): run_atlas exited; CPU time 261213.402151
09:38:11 (4020354): called boinc_finish(0)

</stderr_txt>
]]>

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