Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:46:41 (6777): wrapper (7.7.26015): starting
08:46:41 (6777): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 08:46:41] Arguments: --nthreads 8
[2025-11-19 08:46:41] Threads: 8
[2025-11-19 08:46:41] Checking for CVMFS
[2025-11-19 08:46:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 08:46:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 08:46:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 08:46:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 08:46:41] 2.11.2.0 2877 49037 83600 153046 1 82 10754671 20275201 1 130560 0 10767966 99.869 2364623 31030 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 08:46:41] CVMFS is ok
[2025-11-19 08:46:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 08:46:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 08:46:41] Further information can be found at the LHC@home message board.
[2025-11-19 08:46:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 08:46:41] Checking for apptainer binary...
[2025-11-19 08:46:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 08:46:41] Running /usr/bin/apptainer --version
[2025-11-19 08:46:41] apptainer version 1.3.2-1.el7
[2025-11-19 08:46:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 08:46:43] c-204-32.aglt2.org
[2025-11-19 08:46:43] apptainer works
[2025-11-19 08:46:43] Set ATHENA_PROC_NUMBER=8
[2025-11-19 08:46:43] Set ATHENA_CORE_NUMBER=8
[2025-11-19 08:46:43] Starting ATLAS job with PandaID=6892540351
[2025-11-19 08:46:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 20:58:19]  *** The last 200 lines of the pilot log: ***
[2025-11-19 20:58:19] 2025-11-20 01:57:17,835 | INFO     | time since job start (43816s) is within the limit (172800.0s)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,148 | INFO     | monitor loop #3215: job 0:6892540351 is in state 'finished'
[2025-11-19 20:58:19] 2025-11-20 01:57:19,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,508 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-19 20:58:19] 2025-11-20 01:57:19,512 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1762.375
[2025-11-19 20:58:19] 2025-11-20 01:57:19,514 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892540351/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,515 | INFO     | extracted standard info from prmon json
[2025-11-19 20:58:19] 2025-11-20 01:57:19,515 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 20:58:19] 2025-11-20 01:57:19,515 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 20:58:19] 2025-11-20 01:57:19,528 | INFO     | fitting pss+swap vs Time
[2025-11-19 20:58:19] 2025-11-20 01:57:19,529 | INFO     | sum of square deviations: 114776953307.95532
[2025-11-19 20:58:19] 2025-11-20 01:57:19,539 | INFO     | sum of deviations: 776405401162.7826
[2025-11-19 20:58:19] 2025-11-20 01:57:19,540 | INFO     | mean x: 1763581923.1058495
[2025-11-19 20:58:19] 2025-11-20 01:57:19,540 | INFO     | mean y: 3246606.266016713
[2025-11-19 20:58:19] 2025-11-20 01:57:19,540 | INFO     | intersect: -11926452614.958426
[2025-11-19 20:58:19] 2025-11-20 01:57:19,541 | INFO     | chi2: 5.793744181181648
[2025-11-19 20:58:19] 2025-11-20 01:57:19,542 | INFO     | sum of square deviations: 112395915753.60725
[2025-11-19 20:58:19] 2025-11-20 01:57:19,552 | INFO     | sum of deviations: 1027538540413.552
[2025-11-19 20:58:19] 2025-11-20 01:57:19,552 | INFO     | mean x: 1763581770.6100981
[2025-11-19 20:58:19] 2025-11-20 01:57:19,552 | INFO     | mean y: 3262682.145862553
[2025-11-19 20:58:19] 2025-11-20 01:57:19,553 | INFO     | intersect: -16119638459.966932
[2025-11-19 20:58:19] 2025-11-20 01:57:19,553 | INFO     | chi2: 3.0703211562907406
[2025-11-19 20:58:19] 2025-11-20 01:57:19,553 | INFO     | current chi2=3.0703211562907406 (change=47.006269861494964 %)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,554 | INFO     | sum of square deviations: 110048041611.733
[2025-11-19 20:58:19] 2025-11-20 01:57:19,568 | INFO     | sum of deviations: 1120488018684.483
[2025-11-19 20:58:19] 2025-11-20 01:57:19,568 | INFO     | mean x: 1763581618.1144068
[2025-11-19 20:58:19] 2025-11-20 01:57:19,568 | INFO     | mean y: 3268713.0310734464
[2025-11-19 20:58:19] 2025-11-20 01:57:19,568 | INFO     | intersect: -17953180526.122883
[2025-11-19 20:58:19] 2025-11-20 01:57:19,569 | INFO     | chi2: 2.5881077310075074
[2025-11-19 20:58:19] 2025-11-20 01:57:19,569 | INFO     | current chi2=2.5881077310075074 (change=15.705634711705404 %)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,569 | INFO     | right removable region: 707
[2025-11-19 20:58:19] 2025-11-20 01:57:19,570 | INFO     | sum of square deviations: 112395650403.60735
[2025-11-19 20:58:19] 2025-11-20 01:57:19,590 | INFO     | sum of deviations: 547675525030.84924
[2025-11-19 20:58:19] 2025-11-20 01:57:19,591 | INFO     | mean x: 1763582075.6100981
[2025-11-19 20:58:19] 2025-11-20 01:57:19,591 | INFO     | mean y: 3261229.021037868
[2025-11-19 20:58:19] 2025-11-20 01:57:19,591 | INFO     | intersect: -8590227359.962255
[2025-11-19 20:58:19] 2025-11-20 01:57:19,592 | INFO     | chi2: 3.3555034662603864
[2025-11-19 20:58:19] 2025-11-20 01:57:19,592 | INFO     | current chi2=3.3555034662603864 (change=42.084024400676526 %)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,593 | INFO     | sum of square deviations: 110047598020.18436
[2025-11-19 20:58:19] 2025-11-20 01:57:19,613 | INFO     | sum of deviations: 503737495724.34863
[2025-11-19 20:58:19] 2025-11-20 01:57:19,613 | INFO     | mean x: 1763582228.1115818
[2025-11-19 20:58:19] 2025-11-20 01:57:19,613 | INFO     | mean y: 3264081.286723164
[2025-11-19 20:58:19] 2025-11-20 01:57:19,613 | INFO     | intersect: -8069447282.481095
[2025-11-19 20:58:19] 2025-11-20 01:57:19,614 | INFO     | chi2: 3.316692942290077
[2025-11-19 20:58:19] 2025-11-20 01:57:19,614 | INFO     | current chi2=3.316692942290077 (change=1.156622973588009 %)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,614 | INFO     | left removable region: 20
[2025-11-19 20:58:19] 2025-11-20 01:57:19,615 | INFO     | sum of square deviations: 100543018920.85916
[2025-11-19 20:58:19] 2025-11-20 01:57:19,625 | INFO     | sum of deviations: 801515025343.1674
[2025-11-19 20:58:19] 2025-11-20 01:57:19,625 | INFO     | mean x: 1763582197.6259098
[2025-11-19 20:58:19] 2025-11-20 01:57:19,625 | INFO     | mean y: 3290133.73216885
[2025-11-19 20:58:19] 2025-11-20 01:57:19,625 | INFO     | intersect: -14055742954.756388
[2025-11-19 20:58:19] 2025-11-20 01:57:19,626 | INFO     | chi2: 0.07623851492069601
[2025-11-19 20:58:19] 2025-11-20 01:57:19,626 | INFO     | current memory leak: 7.97 B/s (using 687 data points, chi2=0.08)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,627 | INFO     | could have reported an average CPU frequency of 2177 MHz (27 samples)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,627 | INFO     | ..............................
[2025-11-19 20:58:19] 2025-11-20 01:57:19,627 | INFO     | . Timing measurements:
[2025-11-19 20:58:19] 2025-11-20 01:57:19,627 | INFO     | . get job = 0 s
[2025-11-19 20:58:19] 2025-11-20 01:57:19,627 | INFO     | . initial setup = 2 s
[2025-11-19 20:58:19] 2025-11-20 01:57:19,628 | INFO     | . payload setup = 9 s
[2025-11-19 20:58:19] 2025-11-20 01:57:19,628 | INFO     | . stage-in = 0 s
[2025-11-19 20:58:19] 2025-11-20 01:57:19,628 | INFO     | . payload execution = 43774 s
[2025-11-19 20:58:19] 2025-11-20 01:57:19,628 | INFO     | . stage-out = 3 s
[2025-11-19 20:58:19] 2025-11-20 01:57:19,628 | INFO     | . log creation = 0 s
[2025-11-19 20:58:19] 2025-11-20 01:57:19,628 | INFO     | ..............................
[2025-11-19 20:58:19] 2025-11-20 01:57:19,841 | INFO     | time since job start (43818s) is within the limit (172800.0s)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,981 | INFO     | 
[2025-11-19 20:58:19] 2025-11-20 01:57:19,983 | INFO     | job summary report
[2025-11-19 20:58:19] 2025-11-20 01:57:19,983 | INFO     | --------------------------------------------------
[2025-11-19 20:58:19] 2025-11-20 01:57:19,983 | INFO     | PanDA job id: 6892540351
[2025-11-19 20:58:19] 2025-11-20 01:57:19,983 | INFO     | task id: 47493029
[2025-11-19 20:58:19] 2025-11-20 01:57:19,984 | INFO     | errors: (none)
[2025-11-19 20:58:19] 2025-11-20 01:57:19,984 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 20:58:19] 2025-11-20 01:57:19,984 | INFO     | pilot state: finished 
[2025-11-19 20:58:19] 2025-11-20 01:57:19,984 | INFO     | transexitcode: 0
[2025-11-19 20:58:19] 2025-11-20 01:57:19,984 | INFO     | exeerrorcode: 0
[2025-11-19 20:58:19] 2025-11-20 01:57:19,985 | INFO     | exeerrordiag: 
[2025-11-19 20:58:19] 2025-11-20 01:57:19,985 | INFO     | exitcode: 0
[2025-11-19 20:58:19] 2025-11-20 01:57:19,985 | INFO     | exitmsg: OK
[2025-11-19 20:58:19] 2025-11-20 01:57:19,985 | INFO     | cpuconsumptiontime: 337895 s
[2025-11-19 20:58:19] 2025-11-20 01:57:19,985 | INFO     | nevents: 1000
[2025-11-19 20:58:19] 2025-11-20 01:57:19,985 | INFO     | neventsw: 0
[2025-11-19 20:58:19] 2025-11-20 01:57:19,986 | INFO     | pid: 17073
[2025-11-19 20:58:19] 2025-11-20 01:57:19,986 | INFO     | pgrp: 17073
[2025-11-19 20:58:19] 2025-11-20 01:57:19,986 | INFO     | corecount: 8
[2025-11-19 20:58:19] 2025-11-20 01:57:19,986 | INFO     | event service: False
[2025-11-19 20:58:19] 2025-11-20 01:57:19,987 | INFO     | sizes: {0: 2297029, 1: 2297228, 7: 2297490, 11: 2297518, 43787: 2342989, 43791: 2351983, 43792: 2352167, 43801: 2352413}
[2025-11-19 20:58:19] 2025-11-20 01:57:19,987 | INFO     | --------------------------------------------------
[2025-11-19 20:58:19] 2025-11-20 01:57:19,987 | INFO     | 
[2025-11-19 20:58:19] 2025-11-20 01:57:19,987 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-19 20:58:19] 2025-11-20 01:57:20,017 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,017 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,017 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,018 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,018 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,018 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,018 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,018 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,019 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,020 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 20:58:19] 2025-11-20 01:57:20,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 20:58:19] 2025-11-20 01:57:20,021 | INFO     | job 6892540351 has completed (purged errors)
[2025-11-19 20:58:19] 2025-11-20 01:57:20,021 | INFO     | overall cleanup function is called
[2025-11-19 20:58:19] 2025-11-20 01:57:21,037 | INFO     | --- collectZombieJob: --- 10, [17073]
[2025-11-19 20:58:19] 2025-11-20 01:57:21,037 | INFO     | zombie collector waiting for pid 17073
[2025-11-19 20:58:19] 2025-11-20 01:57:21,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 20:58:19] 2025-11-20 01:57:21,038 | INFO     | collected zombie processes
[2025-11-19 20:58:19] 2025-11-20 01:57:21,038 | INFO     | will attempt to kill all subprocesses of pid=17073
[2025-11-19 20:58:19] 2025-11-20 01:57:21,129 | INFO     | process IDs to be killed: [17073] (in reverse order)
[2025-11-19 20:58:19] 2025-11-20 01:57:21,187 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 20:58:19] 2025-11-20 01:57:21,187 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 20:58:19] 2025-11-20 01:57:21,192 | INFO     | did not find any defunct processes belonging to 17073
[2025-11-19 20:58:19] 2025-11-20 01:57:21,195 | INFO     | did not find any defunct processes belonging to 17073
[2025-11-19 20:58:19] 2025-11-20 01:57:21,197 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 20:58:19] 2025-11-20 01:57:21,197 | INFO     | ready for new job
[2025-11-19 20:58:19] 2025-11-20 01:57:21,198 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 20:58:19] 2025-11-20 01:57:21,201 | INFO     | ***************************************
[2025-11-19 20:58:19] 2025-11-20 01:57:21,201 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 20:58:19] 2025-11-20 01:57:21,201 | INFO     | ***************************************
[2025-11-19 20:58:19] 2025-11-20 01:57:21,201 | INFO     | 
[2025-11-19 20:58:19] 2025-11-20 01:57:21,202 | INFO     | architecture information:
[2025-11-19 20:58:19] 2025-11-20 01:57:21,203 | INFO     | executing command: cat /etc/os-release
[2025-11-19 20:58:19] 2025-11-20 01:57:21,220 | INFO     | cat /etc/os-release:
[2025-11-19 20:58:19] NAME="CentOS Linux"
[2025-11-19 20:58:19] VERSION="7 (Core)"
[2025-11-19 20:58:19] ID="centos"
[2025-11-19 20:58:19] ID_LIKE="rhel fedora"
[2025-11-19 20:58:19] VERSION_ID="7"
[2025-11-19 20:58:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 20:58:19] ANSI_COLOR="0;31"
[2025-11-19 20:58:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 20:58:19] HOME_URL="https://www.centos.org/"
[2025-11-19 20:58:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 20:58:19] 
[2025-11-19 20:58:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 20:58:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 20:58:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 20:58:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 20:58:19] 
[2025-11-19 20:58:19] 2025-11-20 01:57:21,221 | INFO     | ***************************************
[2025-11-19 20:58:19] 2025-11-20 01:57:21,723 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-19 20:58:19] 2025-11-20 01:57:21,744 | INFO     | sufficient remaining disk space (17453547520 B)
[2025-11-19 20:58:19] 2025-11-20 01:57:21,745 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 20:58:19] 2025-11-20 01:57:21,745 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 20:58:19] 2025-11-20 01:57:21,745 | INFO     | update_server=False
[2025-11-19 20:58:19] 2025-11-20 01:57:21,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 20:58:19] 2025-11-20 01:57:21,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 20:58:19] 2025-11-20 01:57:21,746 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-19 20:58:19] 2025-11-20 01:57:21,747 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 20:58:19] 2025-11-20 01:57:21,747 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 20:58:19] 2025-11-20 01:57:21,748 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 20:58:19] 2025-11-20 01:57:22,144 | INFO     | all data control threads have been joined
[2025-11-19 20:58:19] 2025-11-20 01:57:22,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 20:58:19] 2025-11-20 01:57:22,653 | INFO     | aborting loop
[2025-11-19 20:58:19] 2025-11-20 01:57:22,751 | INFO     | [job] retrieve thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:22,768 | INFO     | [payload] failed_post thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:22,799 | INFO     | all job control threads have been joined
[2025-11-19 20:58:19] 2025-11-20 01:57:22,805 | INFO     | all payload control threads have been joined
[2025-11-19 20:58:19] 2025-11-20 01:57:22,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 20:58:19] 2025-11-20 01:57:23,147 | INFO     | [data] control thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:23,151 | INFO     | [data] copytool_in thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:23,271 | INFO     | [payload] validate_post thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:23,547 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:23,658 | INFO     | [job] job monitor thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:23,664 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:23,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:23,804 | INFO     | [job] control thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:23,810 | INFO     | [payload] control thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:24,005 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:24,010 | INFO     | [job] validate thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:24,733 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 20:58:19] 2025-11-20 01:57:24,967 | INFO     | [data] copytool_out thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:25,738 | INFO     | [job] queue monitor thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:57:25,753 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 20:58:19] 2025-11-20 01:58:14,133 | INFO     | [monitor] cgroup control has ended
[2025-11-19 20:58:19] 2025-11-20 01:58:14,256 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139744669964096)>', '<ExcThread(monitor, started 139744361027328)>']
[2025-11-19 20:58:19] 2025-11-20 01:58:14,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 20:58:19] 2025-11-20 01:58:14,992 | INFO     | [monitor] control thread has ended
[2025-11-19 20:58:19] 2025-11-20 01:58:19,272 | INFO     | all workflow threads have been joined
[2025-11-19 20:58:19] 2025-11-20 01:58:19,272 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 20:58:19] 2025-11-20 01:58:19,273 | INFO     | traces error code: 0
[2025-11-19 20:58:19] 2025-11-20 01:58:19,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 20:58:19] 2025-11-20 01:58:19,383 [wrapper] ==== pilot stdout END ====
[2025-11-19 20:58:19] 2025-11-20 01:58:19,389 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 20:58:19] 2025-11-20 01:58:19,393 [wrapper] pilotpid: 10522
[2025-11-19 20:58:19] 2025-11-20 01:58:19,398 [wrapper] Pilot exit status: 0
[2025-11-19 20:58:19] 2025-11-20 01:58:19,414 [wrapper] pandaids: 6892540351
[2025-11-19 20:58:19] 2025-11-20 01:58:19,466 [wrapper] cleanup supervisor_pilot 23989 10523
[2025-11-19 20:58:19] 2025-11-20 01:58:19,471 [wrapper] Test setup, not cleaning
[2025-11-19 20:58:19] 2025-11-20 01:58:19,476 [wrapper] apfmon messages muted
[2025-11-19 20:58:19] 2025-11-20 01:58:19,481 [wrapper] ==== wrapper stdout END ====
[2025-11-19 20:58:19] 2025-11-20 01:58:19,485 [wrapper] ==== wrapper stderr END ====
[2025-11-19 20:58:19]  *** Error codes and diagnostics ***
[2025-11-19 20:58:19]     "exeErrorCode": 0,
[2025-11-19 20:58:19]     "exeErrorDiag": "",
[2025-11-19 20:58:19]     "pilotErrorCode": 0,
[2025-11-19 20:58:19]     "pilotErrorDiag": "",
[2025-11-19 20:58:19]  *** Listing of results directory ***
[2025-11-19 20:58:19] total 1294324
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 02:27 pilot3.tar.gz
[2025-11-19 20:58:19] -rwx------ 1 boincer umatlas     36292 Nov 19 02:33 runpilot2-wrapper.sh
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 02:33 queuedata.json
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas       100 Nov 19 08:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 20:58:19] -rwxr-xr-x 1 boincer umatlas      7986 Nov 19 08:46 run_atlas
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas       105 Nov 19 08:46 job.xml
[2025-11-19 20:58:19] -rw-r--r-- 2 boincer umatlas 408408596 Nov 19 08:46 EVNT.47493027._000232.pool.root.1
[2025-11-19 20:58:19] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 08:46 start_atlas.sh
[2025-11-19 20:58:19] drwxrwx--x 2 boincer umatlas      4096 Nov 19 08:46 shared
[2025-11-19 20:58:19] -rw-r--r-- 2 boincer umatlas    590088 Nov 19 08:46 input.tar.gz
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas         0 Nov 19 08:46 boinc_lockfile
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas      2773 Nov 19 08:46 pandaJob.out
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas    989442 Nov 19 08:46 agis_schedconf.cvmfs.json
[2025-11-19 20:58:19] drwx------ 5 boincer umatlas      4096 Nov 19 08:47 pilot3
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas       532 Nov 19 20:45 boinc_task_state.xml
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas      5912 Nov 19 20:54 init_data.xml
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas 897076348 Nov 19 20:56 HITS.47493029._002273.pool.root.1
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas        95 Nov 19 20:56 pilot_heartbeat.json
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas      1065 Nov 19 20:57 memory_monitor_summary.json
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas   1525063 Nov 19 20:57 agis_ddmendpoints.agis.ALL.json
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas   1968986 Nov 19 20:57 log.47493029._002273.job.log.tgz.1
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas      8658 Nov 19 20:57 heartbeat.json
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas      8192 Nov 19 20:58 boinc_mmap_file
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas        29 Nov 19 20:58 wrapper_checkpoint.txt
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas      4552 Nov 19 20:58 pilotlog.txt
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas   6021698 Nov 19 20:58 log.47493029._002273.job.log.1
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas       353 Nov 19 20:58 output.list
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas       620 Nov 19 20:58 runtime_log
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas   8007680 Nov 19 20:58 result.tar.gz
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas       668 Nov 19 20:58 TpPKDm8rrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmauGKDmDFKnAo.diag
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas      8704 Nov 19 20:58 runtime_log.err
[2025-11-19 20:58:19] -rw-r--r-- 1 boincer umatlas     21239 Nov 19 20:58 stderr.txt
[2025-11-19 20:58:19] HITS file was successfully produced:
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas 897076348 Nov 19 20:56 shared/HITS.pool.root.1
[2025-11-19 20:58:19]  *** Contents of shared directory: ***
[2025-11-19 20:58:19] total 1283316
[2025-11-19 20:58:19] -rw-r--r-- 2 boincer umatlas 408408596 Nov 19 08:46 ATLAS.root_0
[2025-11-19 20:58:19] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 08:46 start_atlas.sh
[2025-11-19 20:58:19] -rw-r--r-- 2 boincer umatlas    590088 Nov 19 08:46 input.tar.gz
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas 897076348 Nov 19 20:56 HITS.pool.root.1
[2025-11-19 20:58:19] -rw------- 1 boincer umatlas   8007680 Nov 19 20:58 result.tar.gz
20:58:20 (6777): run_atlas exited; CPU time 335693.354700
20:58:20 (6777): called boinc_finish(0)

</stderr_txt>
]]>

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