Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:15:03 (2399358): wrapper (7.7.26015): starting
04:15:03 (2399358): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 04:15:03] Arguments: --nthreads 4
[2025-11-22 04:15:03] Threads: 4
[2025-11-22 04:15:03] Checking for CVMFS
[2025-11-22 04:15:03] No cvmfs_config command found, will try listing directly
[2025-11-22 04:15:03] CVMFS is ok
[2025-11-22 04:15:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 04:15:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 04:15:03] Further information can be found at the LHC@home message board.
[2025-11-22 04:15:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 04:15:03] Checking for apptainer binary...
[2025-11-22 04:15:03] which: no apptainer in ((null))
[2025-11-22 04:15:03] apptainer is not installed, using version from CVMFS
[2025-11-22 04:15:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 04:15:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2025-11-22 04:15:03] apptainer works
[2025-11-22 04:15:03] Set ATHENA_PROC_NUMBER=4
[2025-11-22 04:15:03] Set ATHENA_CORE_NUMBER=4
[2025-11-22 04:15:03] Starting ATLAS job with PandaID=6892543843
[2025-11-22 04:15:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 01:33:52]  *** The last 200 lines of the pilot log: ***
[2025-11-23 01:33:52] 2025-11-23 00:28:21,013 | INFO     | time since job start (76386s) is within the limit (172800.0s)
[2025-11-23 01:33:52] 2025-11-23 00:28:22,938 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 01:33:52] 2025-11-23 00:28:22,946 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2603.9182
[2025-11-23 01:33:52] 2025-11-23 00:28:22,954 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6892543843/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 01:33:52] 2025-11-23 00:28:22,955 | INFO     | extracted standard info from prmon json
[2025-11-23 01:33:52] 2025-11-23 00:28:22,955 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 01:33:52] 2025-11-23 00:28:22,955 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 01:33:52] 2025-11-23 00:28:22,979 | INFO     | fitting pss+swap vs Time
[2025-11-23 01:33:52] 2025-11-23 00:28:22,981 | INFO     | sum of square deviations: 608542807173.0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,021 | INFO     | sum of deviations: 1262748853802.0002
[2025-11-23 01:33:52] 2025-11-23 00:28:23,022 | INFO     | time since job start (76388s) is within the limit (172800.0s)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,022 | INFO     | mean x: 1763819496.5
[2025-11-23 01:33:52] 2025-11-23 00:28:23,022 | INFO     | mean y: 2320351.0782747604
[2025-11-23 01:33:52] 2025-11-23 00:28:23,022 | INFO     | intersect: -3657670402.6795263
[2025-11-23 01:33:52] 2025-11-23 00:28:23,024 | INFO     | chi2: 4.508531001967073
[2025-11-23 01:33:52] 2025-11-23 00:28:23,026 | INFO     | sum of square deviations: 601281033808.0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,066 | INFO     | sum of deviations: 1519542735832.9998
[2025-11-23 01:33:52] 2025-11-23 00:28:23,067 | INFO     | mean x: 1763819344.0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,067 | INFO     | mean y: 2325742.433039294
[2025-11-23 01:33:52] 2025-11-23 00:28:23,067 | INFO     | intersect: -4455155403.318122
[2025-11-23 01:33:52] 2025-11-23 00:28:23,069 | INFO     | chi2: 2.545175506041879
[2025-11-23 01:33:52] 2025-11-23 00:28:23,069 | INFO     | current chi2=2.545175506041879 (change=43.54756560548395 %)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,071 | INFO     | sum of square deviations: 594077261530.5
[2025-11-23 01:33:52] 2025-11-23 00:28:23,110 | INFO     | sum of deviations: 1625632883735.5002
[2025-11-23 01:33:52] 2025-11-23 00:28:23,111 | INFO     | mean x: 1763819191.5
[2025-11-23 01:33:52] 2025-11-23 00:28:23,111 | INFO     | mean y: 2327988.3196457326
[2025-11-23 01:33:52] 2025-11-23 00:28:23,111 | INFO     | intersect: -4824186447.326626
[2025-11-23 01:33:52] 2025-11-23 00:28:23,113 | INFO     | chi2: 2.1803057821953655
[2025-11-23 01:33:52] 2025-11-23 00:28:23,113 | INFO     | current chi2=2.1803057821953655 (change=14.335739243928975 %)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,113 | INFO     | right removable region: 1241
[2025-11-23 01:33:52] 2025-11-23 00:28:23,115 | INFO     | sum of square deviations: 601281033808.0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,156 | INFO     | sum of deviations: 1034195368596.0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,156 | INFO     | mean x: 1763819649.0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,157 | INFO     | mean y: 2325144.298315958
[2025-11-23 01:33:52] 2025-11-23 00:28:23,157 | INFO     | intersect: -3031421156.465432
[2025-11-23 01:33:52] 2025-11-23 00:28:23,159 | INFO     | chi2: 2.7356124876202976
[2025-11-23 01:33:52] 2025-11-23 00:28:23,159 | INFO     | current chi2=2.7356124876202976 (change=39.32364030708119 %)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,160 | INFO     | sum of square deviations: 594077261530.5
[2025-11-23 01:33:52] 2025-11-23 00:28:23,203 | INFO     | sum of deviations: 1011835189838.4995
[2025-11-23 01:33:52] 2025-11-23 00:28:23,203 | INFO     | mean x: 1763819801.5
[2025-11-23 01:33:52] 2025-11-23 00:28:23,203 | INFO     | mean y: 2325617.3389694043
[2025-11-23 01:33:52] 2025-11-23 00:28:23,203 | INFO     | intersect: -3001820575.857874
[2025-11-23 01:33:52] 2025-11-23 00:28:23,205 | INFO     | chi2: 2.7325957677561683
[2025-11-23 01:33:52] 2025-11-23 00:28:23,205 | INFO     | current chi2=2.7325957677561683 (change=0.11027584783229155 %)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,205 | INFO     | left removable region: 20
[2025-11-23 01:33:52] 2025-11-23 00:28:23,207 | INFO     | sum of square deviations: 564449541370.0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,247 | INFO     | sum of deviations: 1380217997306.0112
[2025-11-23 01:33:52] 2025-11-23 00:28:23,248 | INFO     | mean x: 1763819771.0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,248 | INFO     | mean y: 2334142.69041769
[2025-11-23 01:33:52] 2025-11-23 00:28:23,248 | INFO     | intersect: -4310639141.03233
[2025-11-23 01:33:52] 2025-11-23 00:28:23,250 | INFO     | chi2: 0.3179958678942478
[2025-11-23 01:33:52] 2025-11-23 00:28:23,250 | INFO     | current memory leak: 2.45 B/s (using 1221 data points, chi2=0.32)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,251 | INFO     | could have reported an average CPU frequency of 2600 MHz (46 samples)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,251 | INFO     | ..............................
[2025-11-23 01:33:52] 2025-11-23 00:28:23,252 | INFO     | . Timing measurements:
[2025-11-23 01:33:52] 2025-11-23 00:28:23,252 | INFO     | . get job = 0 s
[2025-11-23 01:33:52] 2025-11-23 00:28:23,252 | INFO     | . initial setup = 1 s
[2025-11-23 01:33:52] 2025-11-23 00:28:23,252 | INFO     | . payload setup = 5 s
[2025-11-23 01:33:52] 2025-11-23 00:28:23,252 | INFO     | . stage-in = 0 s
[2025-11-23 01:33:52] 2025-11-23 00:28:23,252 | INFO     | . payload execution = 76351 s
[2025-11-23 01:33:52] 2025-11-23 00:28:23,252 | INFO     | . stage-out = 3 s
[2025-11-23 01:33:52] 2025-11-23 00:28:23,253 | INFO     | . log creation = 0 s
[2025-11-23 01:33:52] 2025-11-23 00:28:23,253 | INFO     | ..............................
[2025-11-23 01:33:52] 2025-11-23 00:28:23,363 | INFO     | 
[2025-11-23 01:33:52] 2025-11-23 00:28:23,363 | INFO     | job summary report
[2025-11-23 01:33:52] 2025-11-23 00:28:23,363 | INFO     | --------------------------------------------------
[2025-11-23 01:33:52] 2025-11-23 00:28:23,363 | INFO     | PanDA job id: 6892543843
[2025-11-23 01:33:52] 2025-11-23 00:28:23,363 | INFO     | task id: 47493029
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | errors: (none)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | pilot state: finished 
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | transexitcode: 0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | exeerrorcode: 0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | exeerrordiag: 
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | exitcode: 0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | exitmsg: OK
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | cpuconsumptiontime: 301939 s
[2025-11-23 01:33:52] 2025-11-23 00:28:23,364 | INFO     | nevents: 1000
[2025-11-23 01:33:52] 2025-11-23 00:28:23,365 | INFO     | neventsw: 0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,365 | INFO     | pid: 2410096
[2025-11-23 01:33:52] 2025-11-23 00:28:23,365 | INFO     | pgrp: 2410096
[2025-11-23 01:33:52] 2025-11-23 00:28:23,365 | INFO     | corecount: 4
[2025-11-23 01:33:52] 2025-11-23 00:28:23,365 | INFO     | event service: False
[2025-11-23 01:33:52] 2025-11-23 00:28:23,365 | INFO     | sizes: {0: 2298807, 1: 2298807, 4: 2299097, 11: 2299125, 76361: 2359040, 76365: 2368056, 76367: 2368240, 76372: 2368486}
[2025-11-23 01:33:52] 2025-11-23 00:28:23,365 | INFO     | --------------------------------------------------
[2025-11-23 01:33:52] 2025-11-23 00:28:23,365 | INFO     | 
[2025-11-23 01:33:52] 2025-11-23 00:28:23,365 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-11-23 01:33:52] 2025-11-23 00:28:23,384 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,384 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,385 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,385 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,385 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,385 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,385 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,386 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,386 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,386 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,386 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,386 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,386 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 01:33:52] 2025-11-23 00:28:23,387 | INFO     | job 6892543843 has completed (purged errors)
[2025-11-23 01:33:52] 2025-11-23 00:28:23,387 | INFO     | overall cleanup function is called
[2025-11-23 01:33:52] 2025-11-23 00:28:24,400 | INFO     | --- collectZombieJob: --- 10, [2410096]
[2025-11-23 01:33:52] 2025-11-23 00:28:24,400 | INFO     | zombie collector waiting for pid 2410096
[2025-11-23 01:33:52] 2025-11-23 00:28:24,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 01:33:52] 2025-11-23 00:28:24,401 | INFO     | collected zombie processes
[2025-11-23 01:33:52] 2025-11-23 00:28:24,401 | INFO     | will attempt to kill all subprocesses of pid=2410096
[2025-11-23 01:33:52] 2025-11-23 00:28:24,723 | INFO     | process IDs to be killed: [2410096] (in reverse order)
[2025-11-23 01:33:52] 2025-11-23 00:28:24,808 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 01:33:52] 2025-11-23 00:28:24,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 01:33:52] 2025-11-23 00:28:24,818 | INFO     | did not find any defunct processes belonging to 2410096
[2025-11-23 01:33:52] 2025-11-23 00:28:24,828 | INFO     | did not find any defunct processes belonging to 2410096
[2025-11-23 01:33:52] 2025-11-23 00:28:24,830 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:33:52] 2025-11-23 00:28:24,830 | INFO     | ready for new job
[2025-11-23 01:33:52] 2025-11-23 00:28:24,830 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 01:33:52] 2025-11-23 00:28:24,836 | INFO     | ***************************************
[2025-11-23 01:33:52] 2025-11-23 00:28:24,836 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 01:33:52] 2025-11-23 00:28:24,836 | INFO     | ***************************************
[2025-11-23 01:33:52] 2025-11-23 00:28:24,836 | INFO     | 
[2025-11-23 01:33:52] 2025-11-23 00:28:24,839 | INFO     | architecture information:
[2025-11-23 01:33:52] 2025-11-23 00:28:24,839 | INFO     | executing command: cat /etc/os-release
[2025-11-23 01:33:52] 2025-11-23 00:28:24,854 | INFO     | cat /etc/os-release:
[2025-11-23 01:33:52] NAME="CentOS Linux"
[2025-11-23 01:33:52] VERSION="7 (Core)"
[2025-11-23 01:33:52] ID="centos"
[2025-11-23 01:33:52] ID_LIKE="rhel fedora"
[2025-11-23 01:33:52] VERSION_ID="7"
[2025-11-23 01:33:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 01:33:52] ANSI_COLOR="0;31"
[2025-11-23 01:33:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 01:33:52] HOME_URL="https://www.centos.org/"
[2025-11-23 01:33:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 01:33:52] 
[2025-11-23 01:33:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 01:33:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 01:33:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 01:33:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 01:33:52] 
[2025-11-23 01:33:52] 2025-11-23 00:28:24,854 | INFO     | ***************************************
[2025-11-23 01:33:52] 2025-11-23 00:28:25,355 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-11-23 01:33:52] 2025-11-23 00:28:25,370 | INFO     | sufficient remaining disk space (1664772734976 B)
[2025-11-23 01:33:52] 2025-11-23 00:28:25,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 01:33:52] 2025-11-23 00:28:25,371 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 01:33:52] 2025-11-23 00:28:25,371 | INFO     | update_server=False
[2025-11-23 01:33:52] 2025-11-23 00:28:25,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 01:33:52] 2025-11-23 00:28:25,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:33:52] 2025-11-23 00:28:25,372 | INFO     | aborting loop
[2025-11-23 01:33:52] 2025-11-23 00:28:25,466 | INFO     | all data control threads have been joined
[2025-11-23 01:33:52] 2025-11-23 00:28:26,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 01:33:52] 2025-11-23 00:28:26,375 | INFO     | [job] retrieve thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:26,375 | INFO     | [job] job monitor thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:26,379 | INFO     | [data] copytool_in thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:26,472 | INFO     | [data] control thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:26,560 | INFO     | all job control threads have been joined
[2025-11-23 01:33:52] 2025-11-23 00:28:26,568 | INFO     | [payload] failed_post thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:26,866 | INFO     | all payload control threads have been joined
[2025-11-23 01:33:52] 2025-11-23 00:28:26,883 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:27,151 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:27,565 | INFO     | [job] control thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:27,569 | INFO     | [job] validate thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:27,692 | INFO     | [payload] validate_post thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:27,790 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:27,872 | INFO     | [payload] control thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:28,135 | INFO     | [data] copytool_out thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:28,285 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 01:33:52] 2025-11-23 00:28:28,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:33:52] 2025-11-23 00:28:29,375 | INFO     | [job] queue monitor thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:32,291 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:35,989 | INFO     | job.realtimelogging is not enabled
[2025-11-23 01:33:52] 2025-11-23 00:28:36,990 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 01:33:52] 2025-11-23 00:28:56,573 | INFO     | PID=2403369 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 01:33:52] 2025-11-23 00:28:56,574 | INFO     | .. there are 2 such processes running
[2025-11-23 01:33:52] 2025-11-23 00:28:56,575 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 01:33:52] 2025-11-23 00:28:56,575 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 01:33:52] 2025-11-23 00:28:56,575 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 01:33:52] 2025-11-23 00:29:18,483 | INFO     | [monitor] cgroup control has ended
[2025-11-23 01:33:52] 2025-11-23 00:29:18,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22757205309248)>', '<ExcThread(monitor, started 22756074706688)>']
[2025-11-23 01:33:52] 2025-11-23 00:29:19,652 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 01:33:52] 2025-11-23 00:29:19,652 | INFO     | [monitor] control thread has ended
[2025-11-23 01:33:52] 2025-11-23 00:29:23,751 | INFO     | all workflow threads have been joined
[2025-11-23 01:33:52] 2025-11-23 00:29:23,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 01:33:52] 2025-11-23 00:29:23,751 | INFO     | traces error code: 0
[2025-11-23 01:33:52] 2025-11-23 00:29:23,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 01:33:52] 2025-11-23 00:29:23,875 [wrapper] ==== pilot stdout END ====
[2025-11-23 01:33:52] 2025-11-23 00:29:23,878 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 01:33:52] 2025-11-23 00:29:23,881 [wrapper] pilotpid: 2403369
[2025-11-23 01:33:52] 2025-11-23 00:29:23,883 [wrapper] Pilot exit status: 0
[2025-11-23 01:33:52] 2025-11-23 00:29:23,892 [wrapper] pandaids: 6892543843
[2025-11-23 01:33:52] 2025-11-23 00:29:23,949 [wrapper] cleanup supervisor_pilot 3130315 2403370
[2025-11-23 01:33:52] 2025-11-23 00:29:23,952 [wrapper] Test setup, not cleaning
[2025-11-23 01:33:52] 2025-11-23 00:29:23,954 [wrapper] apfmon messages muted
[2025-11-23 01:33:52] 2025-11-23 00:29:23,957 [wrapper] ==== wrapper stdout END ====
[2025-11-23 01:33:52] 2025-11-23 00:29:23,959 [wrapper] ==== wrapper stderr END ====
[2025-11-23 01:33:52]  *** Error codes and diagnostics ***
[2025-11-23 01:33:52]     "exeErrorCode": 0,
[2025-11-23 01:33:52]     "exeErrorDiag": "",
[2025-11-23 01:33:52]     "pilotErrorCode": 0,
[2025-11-23 01:33:52]     "pilotErrorDiag": "",
[2025-11-23 01:33:52]  *** Listing of results directory ***
[2025-11-23 01:33:52] total 1321288
[2025-11-23 01:33:52] -rwx------ 1 boinc boinc     36292 Nov 19 09:00 runpilot2-wrapper.sh
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc      5112 Nov 19 09:00 queuedata.json
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc    576529 Nov 19 09:00 pilot3.tar.gz
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc       100 Nov 22 04:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 01:33:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 04:14 run_atlas
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc       105 Nov 22 04:14 job.xml
[2025-11-23 01:33:52] -rw-r--r-- 2 boinc boinc 407660586 Nov 22 04:15 EVNT.47493027._000263.pool.root.1
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc      6421 Nov 22 04:15 init_data.xml
[2025-11-23 01:33:52] -rw-r--r-- 2 boinc boinc     15120 Nov 22 04:15 start_atlas.sh
[2025-11-23 01:33:52] drwxrwx--x 2 boinc boinc      4096 Nov 22 04:15 shared
[2025-11-23 01:33:52] -rw-r--r-- 2 boinc boinc    590089 Nov 22 04:15 input.tar.gz
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc         0 Nov 22 04:15 boinc_lockfile
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc      2773 Nov 22 04:15 pandaJob.out
[2025-11-23 01:33:52] -rw------- 1 boinc boinc    989752 Nov 22 04:15 agis_schedconf.cvmfs.json
[2025-11-23 01:33:52] drwx------ 5 boinc boinc      4096 Nov 22 04:15 pilot3
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc       531 Nov 23 01:14 boinc_task_state.xml
[2025-11-23 01:33:52] -rw------- 1 boinc boinc 916061282 Nov 23 01:27 HITS.47493029._002582.pool.root.1
[2025-11-23 01:33:52] -rw------- 1 boinc boinc      1047 Nov 23 01:28 memory_monitor_summary.json
[2025-11-23 01:33:52] -rw------- 1 boinc boinc   1526164 Nov 23 01:28 agis_ddmendpoints.agis.ALL.json
[2025-11-23 01:33:52] -rw------- 1 boinc boinc   1929316 Nov 23 01:28 log.47493029._002582.job.log.tgz.1
[2025-11-23 01:33:52] -rw------- 1 boinc boinc      8630 Nov 23 01:28 heartbeat.json
[2025-11-23 01:33:52] -rw------- 1 boinc boinc        95 Nov 23 01:28 pilot_heartbeat.json
[2025-11-23 01:33:52] -rw------- 1 boinc boinc      4906 Nov 23 01:29 pilotlog.txt
[2025-11-23 01:33:52] -rw------- 1 boinc boinc  10748242 Nov 23 01:29 log.47493029._002582.job.log.1
[2025-11-23 01:33:52] -rw------- 1 boinc boinc       353 Nov 23 01:29 output.list
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc       620 Nov 23 01:29 runtime_log
[2025-11-23 01:33:52] -rw------- 1 boinc boinc  12697600 Nov 23 01:29 result.tar.gz
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc      9070 Nov 23 01:29 runtime_log.err
[2025-11-23 01:33:52] -rw------- 1 boinc boinc       670 Nov 23 01:29 C15KDm2Hsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5xGKDmpZUj9m.diag
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc        28 Nov 23 01:33 wrapper_checkpoint.txt
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc      8192 Nov 23 01:33 boinc_mmap_file
[2025-11-23 01:33:52] -rw-r--r-- 1 boinc boinc     21019 Nov 23 01:33 stderr.txt
[2025-11-23 01:33:52] HITS file was successfully produced:
[2025-11-23 01:33:52] -rw------- 1 boinc boinc 916061282 Nov 23 01:27 shared/HITS.pool.root.1
[2025-11-23 01:33:52]  *** Contents of shared directory: ***
[2025-11-23 01:33:52] total 1305700
[2025-11-23 01:33:52] -rw-r--r-- 2 boinc boinc 407660586 Nov 22 04:15 ATLAS.root_0
[2025-11-23 01:33:52] -rw-r--r-- 2 boinc boinc     15120 Nov 22 04:15 start_atlas.sh
[2025-11-23 01:33:52] -rw-r--r-- 2 boinc boinc    590089 Nov 22 04:15 input.tar.gz
[2025-11-23 01:33:52] -rw------- 1 boinc boinc 916061282 Nov 23 01:27 HITS.pool.root.1
[2025-11-23 01:33:52] -rw------- 1 boinc boinc  12697600 Nov 23 01:29 result.tar.gz
01:33:54 (2399358): run_atlas exited; CPU time 304759.023707
01:33:54 (2399358): called boinc_finish(0)

</stderr_txt>
]]>

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