Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
17:32:18 (299951): wrapper (7.7.26015): starting
17:32:18 (299951): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 17:32:18] Arguments: --nthreads 12
[2025-11-20 17:32:18] Threads: 12
[2025-11-20 17:32:18] Checking for CVMFS
[2025-11-20 17:32:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:32:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:32:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:32:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:32:18] 2.12.7.0 2523782 2181 73816 153098 0 84 2795775 4194305 2162 130560 0 4987264 99.953 267164 1795 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2025-11-20 17:32:18] CVMFS is ok
[2025-11-20 17:32:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:32:18] Checking for apptainer binary...
[2025-11-20 17:32:18] apptainer is not installed, using version from CVMFS
[2025-11-20 17:32:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:32:19] Trebeth
[2025-11-20 17:32:19] apptainer works
[2025-11-20 17:32:19] Set ATHENA_PROC_NUMBER=12
[2025-11-20 17:32:19] Set ATHENA_CORE_NUMBER=12
[2025-11-20 17:32:19] Starting ATLAS job with PandaID=6892522266
[2025-11-20 17:32:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:25:07]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:25:07] 2025-11-21 04:24:24,764 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:25:07] 2025-11-21 04:24:24,765 | INFO     | sum of square deviations: 12844031411.352625
[2025-11-20 23:25:07] 2025-11-21 04:24:24,766 | INFO     | sum of deviations: 400034245520.3581
[2025-11-20 23:25:07] 2025-11-21 04:24:24,766 | INFO     | mean x: 1763688492.4046242
[2025-11-20 23:25:07] 2025-11-21 04:24:24,766 | INFO     | mean y: 3353786.0260115606
[2025-11-20 23:25:07] 2025-11-21 04:24:24,766 | INFO     | intersect: -54927670033.20962
[2025-11-20 23:25:07] 2025-11-21 04:24:24,767 | INFO     | chi2: 9.757232255139415
[2025-11-20 23:25:07] 2025-11-21 04:24:24,767 | INFO     | sum of square deviations: 12295307279.700943
[2025-11-20 23:25:07] 2025-11-21 04:24:24,769 | INFO     | sum of deviations: 542427385352.8681
[2025-11-20 23:25:07] 2025-11-21 04:24:24,769 | INFO     | mean x: 1763688339.9178886
[2025-11-20 23:25:07] 2025-11-21 04:24:24,769 | INFO     | mean y: 3393377.3167155427
[2025-11-20 23:25:07] 2025-11-21 04:24:24,769 | INFO     | intersect: -77804572949.67612
[2025-11-20 23:25:07] 2025-11-21 04:24:24,769 | INFO     | chi2: 6.285927427630854
[2025-11-20 23:25:07] 2025-11-21 04:24:24,769 | INFO     | current chi2=6.285927427630854 (change=35.576736688625246 %)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,769 | INFO     | sum of square deviations: 11762402676.139885
[2025-11-20 23:25:07] 2025-11-21 04:24:24,771 | INFO     | sum of deviations: 566224229547.777
[2025-11-20 23:25:07] 2025-11-21 04:24:24,771 | INFO     | mean x: 1763688187.4255953
[2025-11-20 23:25:07] 2025-11-21 04:24:24,771 | INFO     | mean y: 3400094.4910714286
[2025-11-20 23:25:07] 2025-11-21 04:24:24,771 | INFO     | intersect: -84897874975.21277
[2025-11-20 23:25:07] 2025-11-21 04:24:24,771 | INFO     | chi2: 5.827260712705501
[2025-11-20 23:25:07] 2025-11-21 04:24:24,771 | INFO     | current chi2=5.827260712705501 (change=7.296723040568471 %)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,771 | INFO     | right removable region: 335
[2025-11-20 23:25:07] 2025-11-21 04:24:24,771 | INFO     | sum of square deviations: 12295116349.700943
[2025-11-20 23:25:07] 2025-11-21 04:24:24,773 | INFO     | sum of deviations: 256577926400.45743
[2025-11-20 23:25:07] 2025-11-21 04:24:24,773 | INFO     | mean x: 1763688644.9178886
[2025-11-20 23:25:07] 2025-11-21 04:24:24,773 | INFO     | mean y: 3393615.302052786
[2025-11-20 23:25:07] 2025-11-21 04:24:24,773 | INFO     | intersect: -36801754254.654564
[2025-11-20 23:25:07] 2025-11-21 04:24:24,773 | INFO     | chi2: 6.423219748969094
[2025-11-20 23:25:07] 2025-11-21 04:24:24,773 | INFO     | current chi2=6.423219748969094 (change=34.16965404727556 %)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,774 | INFO     | sum of square deviations: 11762062050.425629
[2025-11-20 23:25:07] 2025-11-21 04:24:24,775 | INFO     | sum of deviations: 134995613747.96707
[2025-11-20 23:25:07] 2025-11-21 04:24:24,775 | INFO     | mean x: 1763688797.4315476
[2025-11-20 23:25:07] 2025-11-21 04:24:24,775 | INFO     | mean y: 3428392.8898809524
[2025-11-20 23:25:07] 2025-11-21 04:24:24,775 | INFO     | intersect: -20238791946.448498
[2025-11-20 23:25:07] 2025-11-21 04:24:24,775 | INFO     | chi2: 4.212151972771276
[2025-11-20 23:25:07] 2025-11-21 04:24:24,776 | INFO     | current chi2=4.212151972771276 (change=34.423044245881314 %)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,776 | INFO     | sum of square deviations: 11244738435.401781
[2025-11-20 23:25:07] 2025-11-21 04:24:24,777 | INFO     | sum of deviations: 102853299562.78555
[2025-11-20 23:25:07] 2025-11-21 04:24:24,777 | INFO     | mean x: 1763688949.9305136
[2025-11-20 23:25:07] 2025-11-21 04:24:24,777 | INFO     | mean y: 3437853.5558912386
[2025-11-20 23:25:07] 2025-11-21 04:24:24,777 | INFO     | intersect: -16128660633.650604
[2025-11-20 23:25:07] 2025-11-21 04:24:24,778 | INFO     | chi2: 4.1149129848381545
[2025-11-20 23:25:07] 2025-11-21 04:24:24,778 | INFO     | current chi2=4.1149129848381545 (change=2.3085346531109616 %)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,778 | INFO     | left removable region: 30
[2025-11-20 23:25:07] 2025-11-21 04:24:24,778 | INFO     | sum of square deviations: 8797709642.262297
[2025-11-20 23:25:07] 2025-11-21 04:24:24,779 | INFO     | sum of deviations: 218286316079.65573
[2025-11-20 23:25:07] 2025-11-21 04:24:24,779 | INFO     | mean x: 1763689071.9508197
[2025-11-20 23:25:07] 2025-11-21 04:24:24,779 | INFO     | mean y: 3505130.5770491804
[2025-11-20 23:25:07] 2025-11-21 04:24:24,779 | INFO     | intersect: -43756655852.309494
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | chi2: 0.0363532924983207
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | current memory leak: 24.81 B/s (using 305 data points, chi2=0.04)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | could have reported an average CPU frequency of 3006 MHz (15 samples)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | ..............................
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | . Timing measurements:
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | . get job = 0 s
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | . initial setup = 2 s
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | . payload setup = 4 s
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | . stage-in = 0 s
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | . payload execution = 21086 s
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | . stage-out = 3 s
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | . log creation = 0 s
[2025-11-20 23:25:07] 2025-11-21 04:24:24,780 | INFO     | ..............................
[2025-11-20 23:25:07] 2025-11-21 04:24:24,825 | INFO     | 
[2025-11-20 23:25:07] 2025-11-21 04:24:24,825 | INFO     | job summary report
[2025-11-20 23:25:07] 2025-11-21 04:24:24,825 | INFO     | --------------------------------------------------
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | PanDA job id: 6892522266
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | task id: 47493029
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | errors: (none)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | pilot state: finished 
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | transexitcode: 0
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | exeerrorcode: 0
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | exeerrordiag: 
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | exitcode: 0
[2025-11-20 23:25:07] 2025-11-21 04:24:24,826 | INFO     | exitmsg: OK
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | cpuconsumptiontime: 239469 s
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | nevents: 1000
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | neventsw: 0
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | pid: 324420
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | pgrp: 324420
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | corecount: 12
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | event service: False
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | sizes: {0: 2298799, 3: 2299061, 11: 2299089, 21094: 2333578, 21098: 2342586, 21099: 2342642, 21103: 2343016}
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | --------------------------------------------------
[2025-11-20 23:25:07] 2025-11-21 04:24:24,827 | INFO     | 
[2025-11-20 23:25:07] 2025-11-21 04:24:24,828 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-20 23:25:07] 2025-11-21 04:24:24,847 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,847 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,847 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,847 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,849 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,849 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,849 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,849 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:25:07] 2025-11-21 04:24:24,849 | INFO     | job 6892522266 has completed (purged errors)
[2025-11-20 23:25:07] 2025-11-21 04:24:24,849 | INFO     | overall cleanup function is called
[2025-11-20 23:25:07] 2025-11-21 04:24:25,866 | INFO     | --- collectZombieJob: --- 10, [324420]
[2025-11-20 23:25:07] 2025-11-21 04:24:25,866 | INFO     | zombie collector waiting for pid 324420
[2025-11-20 23:25:07] 2025-11-21 04:24:25,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:25:07] 2025-11-21 04:24:25,867 | INFO     | collected zombie processes
[2025-11-20 23:25:07] 2025-11-21 04:24:25,867 | INFO     | will attempt to kill all subprocesses of pid=324420
[2025-11-20 23:25:07] 2025-11-21 04:24:26,026 | INFO     | process IDs to be killed: [324420] (in reverse order)
[2025-11-20 23:25:07] 2025-11-21 04:24:26,099 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:25:07] 2025-11-21 04:24:26,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:25:07] 2025-11-21 04:24:26,106 | INFO     | did not find any defunct processes belonging to 324420
[2025-11-20 23:25:07] 2025-11-21 04:24:26,111 | INFO     | did not find any defunct processes belonging to 324420
[2025-11-20 23:25:07] 2025-11-21 04:24:26,113 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:25:07] 2025-11-21 04:24:26,113 | INFO     | ready for new job
[2025-11-20 23:25:07] 2025-11-21 04:24:26,114 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:25:07] 2025-11-21 04:24:26,116 | INFO     | ***************************************
[2025-11-20 23:25:07] 2025-11-21 04:24:26,116 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:25:07] 2025-11-21 04:24:26,116 | INFO     | ***************************************
[2025-11-20 23:25:07] 2025-11-21 04:24:26,116 | INFO     | 
[2025-11-20 23:25:07] 2025-11-21 04:24:26,137 | INFO     | architecture information:
[2025-11-20 23:25:07] 2025-11-21 04:24:26,138 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:25:07] 2025-11-21 04:24:26,148 | INFO     | cat /etc/os-release:
[2025-11-20 23:25:07] NAME="CentOS Linux"
[2025-11-20 23:25:07] VERSION="7 (Core)"
[2025-11-20 23:25:07] ID="centos"
[2025-11-20 23:25:07] ID_LIKE="rhel fedora"
[2025-11-20 23:25:07] VERSION_ID="7"
[2025-11-20 23:25:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:25:07] ANSI_COLOR="0;31"
[2025-11-20 23:25:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:25:07] HOME_URL="https://www.centos.org/"
[2025-11-20 23:25:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:25:07] 
[2025-11-20 23:25:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:25:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:25:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:25:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:25:07] 
[2025-11-20 23:25:07] 2025-11-21 04:24:26,148 | INFO     | ***************************************
[2025-11-20 23:25:07] 2025-11-21 04:24:26,651 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-20 23:25:07] 2025-11-21 04:24:26,665 | INFO     | sufficient remaining disk space (388700831744 B)
[2025-11-20 23:25:07] 2025-11-21 04:24:26,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:25:07] 2025-11-21 04:24:26,666 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:25:07] 2025-11-21 04:24:26,666 | INFO     | update_server=False
[2025-11-20 23:25:07] 2025-11-21 04:24:26,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:25:07] 2025-11-21 04:24:26,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:25:07] 2025-11-21 04:24:26,666 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:25:07] 2025-11-21 04:24:26,886 | INFO     | all job control threads have been joined
[2025-11-20 23:25:07] 2025-11-21 04:24:26,897 | INFO     | all data control threads have been joined
[2025-11-20 23:25:07] 2025-11-21 04:24:27,003 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 23:25:07] 2025-11-21 04:24:27,004 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 23:25:07] 2025-11-21 04:24:27,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:25:07] 2025-11-21 04:24:27,004 | INFO     | will abort loop
[2025-11-20 23:25:07] 2025-11-21 04:24:27,307 | INFO     | all payload control threads have been joined
[2025-11-20 23:25:07] 2025-11-21 04:24:27,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:25:07] 2025-11-21 04:24:27,670 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:27,671 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:27,678 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:27,768 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:27,892 | INFO     | [job] control thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:27,902 | INFO     | [data] control thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:28,006 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:28,180 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:28,313 | INFO     | [payload] control thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:28,366 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:28,428 | INFO     | [job] validate thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:28,496 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:28,670 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:28,867 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:28,892 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:31,579 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:25:07] 2025-11-21 04:24:57,021 | INFO     | PID=304116 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 23:25:07] 2025-11-21 04:24:57,021 | INFO     | .. there are 4 such processes running
[2025-11-20 23:25:07] 2025-11-21 04:24:57,022 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:25:07] 2025-11-21 04:24:57,022 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:25:07] 2025-11-21 04:24:57,022 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:25:07] 2025-11-21 04:25:02,097 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:25:07] 2025-11-21 04:25:02,590 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683799340864)>', '<ExcThread(monitor, started 139683006772992)>']
[2025-11-20 23:25:07] 2025-11-21 04:25:03,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:25:07] 2025-11-21 04:25:03,046 | INFO     | [monitor] control thread has ended
[2025-11-20 23:25:07] 2025-11-21 04:25:07,616 | INFO     | all workflow threads have been joined
[2025-11-20 23:25:07] 2025-11-21 04:25:07,616 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:25:07] 2025-11-21 04:25:07,616 | INFO     | traces error code: 0
[2025-11-20 23:25:07] 2025-11-21 04:25:07,617 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:25:07] 2025-11-21 04:25:07,720 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:25:07] 2025-11-21 04:25:07,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:25:07] 2025-11-21 04:25:07,724 [wrapper] pilotpid: 304116
[2025-11-20 23:25:07] 2025-11-21 04:25:07,726 [wrapper] Pilot exit status: 0
[2025-11-20 23:25:07] 2025-11-21 04:25:07,732 [wrapper] pandaids: 6892522266
[2025-11-20 23:25:07] 2025-11-21 04:25:07,763 [wrapper] cleanup supervisor_pilot  557055 304117
[2025-11-20 23:25:07] 2025-11-21 04:25:07,764 [wrapper] Test setup, not cleaning
[2025-11-20 23:25:07] 2025-11-21 04:25:07,766 [wrapper] apfmon messages muted
[2025-11-20 23:25:07] 2025-11-21 04:25:07,767 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:25:07] 2025-11-21 04:25:07,768 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:25:07]  *** Error codes and diagnostics ***
[2025-11-20 23:25:07]     "exeErrorCode": 0,
[2025-11-20 23:25:07]     "exeErrorDiag": "",
[2025-11-20 23:25:07]     "pilotErrorCode": 0,
[2025-11-20 23:25:07]     "pilotErrorDiag": "",
[2025-11-20 23:25:07]  *** Listing of results directory ***
[2025-11-20 23:25:07] total 1295928
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-20 23:25:07] -rwx------ 1 boinc boinc     36292 Nov 19 02:04 runpilot2-wrapper.sh
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc      5112 Nov 19 02:04 queuedata.json
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc       100 Nov 20 17:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:25:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 17:32 run_atlas
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc       105 Nov 20 17:32 job.xml
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc      7602 Nov 20 17:32 init_data.xml
[2025-11-20 23:25:07] -rw-r--r-- 2 boinc boinc 408811855 Nov 20 17:32 EVNT.47493027._000036.pool.root.1
[2025-11-20 23:25:07] -rw-r--r-- 2 boinc boinc     15120 Nov 20 17:32 start_atlas.sh
[2025-11-20 23:25:07] drwxrwx--x 2 boinc boinc      4096 Nov 20 17:32 shared
[2025-11-20 23:25:07] -rw-r--r-- 2 boinc boinc    590097 Nov 20 17:32 input.tar.gz
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc         0 Nov 20 17:32 boinc_lockfile
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc      2771 Nov 20 17:32 pandaJob.out
[2025-11-20 23:25:07] -rw------- 1 boinc boinc    989825 Nov 20 17:32 agis_schedconf.cvmfs.json
[2025-11-20 23:25:07] drwx------ 5 boinc boinc      4096 Nov 20 17:32 pilot3
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc       532 Nov 20 23:15 boinc_task_state.xml
[2025-11-20 23:25:07] -rw------- 1 boinc boinc 904011961 Nov 20 23:23 HITS.47493029._000285.pool.root.1
[2025-11-20 23:25:07] -rw------- 1 boinc boinc      1045 Nov 20 23:24 memory_monitor_summary.json
[2025-11-20 23:25:07] -rw------- 1 boinc boinc   1526164 Nov 20 23:24 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:25:07] -rw------- 1 boinc boinc   2110143 Nov 20 23:24 log.47493029._000285.job.log.tgz.1
[2025-11-20 23:25:07] -rw------- 1 boinc boinc      8593 Nov 20 23:24 heartbeat.json
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc      8192 Nov 20 23:24 boinc_mmap_file
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc        29 Nov 20 23:24 wrapper_checkpoint.txt
[2025-11-20 23:25:07] -rw------- 1 boinc boinc        95 Nov 20 23:24 pilot_heartbeat.json
[2025-11-20 23:25:07] -rw------- 1 boinc boinc      5016 Nov 20 23:25 pilotlog.txt
[2025-11-20 23:25:07] -rw------- 1 boinc boinc   3028755 Nov 20 23:25 log.47493029._000285.job.log.1
[2025-11-20 23:25:07] -rw------- 1 boinc boinc       353 Nov 20 23:25 output.list
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc       620 Nov 20 23:25 runtime_log
[2025-11-20 23:25:07] -rw------- 1 boinc boinc   5160960 Nov 20 23:25 result.tar.gz
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc      8773 Nov 20 23:25 runtime_log.err
[2025-11-20 23:25:07] -rw------- 1 boinc boinc       658 Nov 20 23:25 CvoMDmMQrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYcGKDmkpf3Ho.diag
[2025-11-20 23:25:07] -rw-r--r-- 1 boinc boinc     20857 Nov 20 23:25 stderr.txt
[2025-11-20 23:25:07] HITS file was successfully produced:
[2025-11-20 23:25:07] -rw------- 1 boinc boinc 904011961 Nov 20 23:23 shared/HITS.pool.root.1
[2025-11-20 23:25:07]  *** Contents of shared directory: ***
[2025-11-20 23:25:07] total 1287704
[2025-11-20 23:25:07] -rw-r--r-- 2 boinc boinc 408811855 Nov 20 17:32 ATLAS.root_0
[2025-11-20 23:25:07] -rw-r--r-- 2 boinc boinc     15120 Nov 20 17:32 start_atlas.sh
[2025-11-20 23:25:07] -rw-r--r-- 2 boinc boinc    590097 Nov 20 17:32 input.tar.gz
[2025-11-20 23:25:07] -rw------- 1 boinc boinc 904011961 Nov 20 23:23 HITS.pool.root.1
[2025-11-20 23:25:07] -rw------- 1 boinc boinc   5160960 Nov 20 23:25 result.tar.gz
23:25:09 (299951): run_atlas exited; CPU time 239279.220491
23:25:09 (299951): called boinc_finish(0)

</stderr_txt>
]]>

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