Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
01:28:22 (51068): wrapper (7.7.26015): starting
01:28:22 (51068): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 01:28:22] Arguments: --nthreads 12
[2025-11-21 01:28:22] Threads: 12
[2025-11-21 01:28:22] Checking for CVMFS
[2025-11-21 01:28:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 01:28:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 01:28:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 01:28:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 01:28:22] 2.13.3.0 15893 13 42084 153102 2 90 3360990 20480000 1892 130560 0 117284 99.981 2910 383 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-21 01:28:22] CVMFS is ok
[2025-11-21 01:28:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 01:28:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 01:28:22] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 01:28:22] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 01:28:22] Further information can be found at the LHC@home message board.
[2025-11-21 01:28:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:28:22] Checking for apptainer binary...
[2025-11-21 01:28:22] apptainer is not installed, using version from CVMFS
[2025-11-21 01:28:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:28:22] pascal-Intel-Z790-Workstation
[2025-11-21 01:28:22] apptainer works
[2025-11-21 01:28:22] Set ATHENA_PROC_NUMBER=12
[2025-11-21 01:28:22] Set ATHENA_CORE_NUMBER=12
[2025-11-21 01:28:22] Starting ATLAS job with PandaID=6892534812
[2025-11-21 01:28:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 07:37:43]  *** The last 200 lines of the pilot log: ***
[2025-11-21 07:37:43] 2025-11-21 06:37:09,826 | INFO     | time since job start (22107s) is within the limit (172800.0s)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,018 | INFO     | monitor loop #1642: job 0:6892534812 is in state 'finished'
[2025-11-21 07:37:43] 2025-11-21 06:37:11,018 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,043 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 07:37:43] 2025-11-21 06:37:11,047 | INFO     | found 24 cores (24 cores per socket, 1 socket) , CPU MHz: 2221.1600000000003
[2025-11-21 07:37:43] 2025-11-21 06:37:11,051 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6892534812/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,052 | INFO     | extracted standard info from prmon json
[2025-11-21 07:37:43] 2025-11-21 06:37:11,052 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 07:37:43] 2025-11-21 06:37:11,052 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 07:37:43] 2025-11-21 06:37:11,056 | INFO     | fitting pss+swap vs Time
[2025-11-21 07:37:43] 2025-11-21 06:37:11,057 | INFO     | sum of square deviations: 14709417684.70725
[2025-11-21 07:37:43] 2025-11-21 06:37:11,059 | INFO     | sum of deviations: 299850016585.40906
[2025-11-21 07:37:43] 2025-11-21 06:37:11,059 | INFO     | mean x: 1763695959.839779
[2025-11-21 07:37:43] 2025-11-21 06:37:11,059 | INFO     | mean y: 3413499.6104972376
[2025-11-21 07:37:43] 2025-11-21 06:37:11,060 | INFO     | intersect: -35949353234.27547
[2025-11-21 07:37:43] 2025-11-21 06:37:11,060 | INFO     | chi2: 5.708677929256036
[2025-11-21 07:37:43] 2025-11-21 06:37:11,060 | INFO     | sum of square deviations: 14108318346.62192
[2025-11-21 07:37:43] 2025-11-21 06:37:11,062 | INFO     | sum of deviations: 422846669976.3701
[2025-11-21 07:37:43] 2025-11-21 06:37:11,063 | INFO     | mean x: 1763695807.3445377
[2025-11-21 07:37:43] 2025-11-21 06:37:11,063 | INFO     | mean y: 3444653.907563025
[2025-11-21 07:37:43] 2025-11-21 06:37:11,063 | INFO     | intersect: -52857065058.470055
[2025-11-21 07:37:43] 2025-11-21 06:37:11,063 | INFO     | chi2: 3.2156787484656117
[2025-11-21 07:37:43] 2025-11-21 06:37:11,063 | INFO     | current chi2=3.2156787484656117 (change=43.67034209469435 %)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,064 | INFO     | sum of square deviations: 13523823971.01994
[2025-11-21 07:37:43] 2025-11-21 06:37:11,066 | INFO     | sum of deviations: 463540439264.4828
[2025-11-21 07:37:43] 2025-11-21 06:37:11,066 | INFO     | mean x: 1763695654.8494318
[2025-11-21 07:37:43] 2025-11-21 06:37:11,066 | INFO     | mean y: 3455209.914772727
[2025-11-21 07:37:43] 2025-11-21 06:37:11,066 | INFO     | intersect: -60448696513.5676
[2025-11-21 07:37:43] 2025-11-21 06:37:11,066 | INFO     | chi2: 2.6955160519630192
[2025-11-21 07:37:43] 2025-11-21 06:37:11,066 | INFO     | current chi2=2.6955160519630192 (change=16.175829029898974 %)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,066 | INFO     | right removable region: 351
[2025-11-21 07:37:43] 2025-11-21 06:37:11,067 | INFO     | sum of square deviations: 14108265154.308075
[2025-11-21 07:37:43] 2025-11-21 06:37:11,069 | INFO     | sum of deviations: 171965300952.29965
[2025-11-21 07:37:43] 2025-11-21 06:37:11,069 | INFO     | mean x: 1763696112.3417368
[2025-11-21 07:37:43] 2025-11-21 06:37:11,069 | INFO     | mean y: 3445853.6778711486
[2025-11-21 07:37:43] 2025-11-21 06:37:11,069 | INFO     | intersect: -21494203178.99814
[2025-11-21 07:37:43] 2025-11-21 06:37:11,070 | INFO     | chi2: 3.1961147310108533
[2025-11-21 07:37:43] 2025-11-21 06:37:11,070 | INFO     | current chi2=3.1961147310108533 (change=44.01304871954169 %)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,070 | INFO     | sum of square deviations: 13523718074.40625
[2025-11-21 07:37:43] 2025-11-21 06:37:11,072 | INFO     | sum of deviations: 138274326153.09375
[2025-11-21 07:37:43] 2025-11-21 06:37:11,072 | INFO     | mean x: 1763696264.84375
[2025-11-21 07:37:43] 2025-11-21 06:37:11,073 | INFO     | mean y: 3454632.4744318184
[2025-11-21 07:37:43] 2025-11-21 06:37:11,073 | INFO     | intersect: -18029597462.97936
[2025-11-21 07:37:43] 2025-11-21 06:37:11,073 | INFO     | chi2: 3.1015556337890207
[2025-11-21 07:37:43] 2025-11-21 06:37:11,073 | INFO     | current chi2=3.1015556337890207 (change=2.9585639183836774 %)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,073 | INFO     | left removable region: 20
[2025-11-21 07:37:43] 2025-11-21 06:37:11,073 | INFO     | sum of square deviations: 11244811446.217577
[2025-11-21 07:37:43] 2025-11-21 06:37:11,075 | INFO     | sum of deviations: 257894448814.7009
[2025-11-21 07:37:43] 2025-11-21 06:37:11,075 | INFO     | mean x: 1763696234.3595166
[2025-11-21 07:37:43] 2025-11-21 06:37:11,076 | INFO     | mean y: 3510185.3806646527
[2025-11-21 07:37:43] 2025-11-21 06:37:11,076 | INFO     | intersect: -40446031402.060394
[2025-11-21 07:37:43] 2025-11-21 06:37:11,076 | INFO     | chi2: 0.030228473458718347
[2025-11-21 07:37:43] 2025-11-21 06:37:11,076 | INFO     | current memory leak: 22.93 B/s (using 331 data points, chi2=0.03)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | could have reported an average CPU frequency of 2452 MHz (16 samples)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | ..............................
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | . Timing measurements:
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | . get job = 0 s
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | . initial setup = 7 s
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | . payload setup = 5 s
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | . stage-in = 0 s
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | . payload execution = 22074 s
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | . stage-out = 3 s
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | . log creation = 0 s
[2025-11-21 07:37:43] 2025-11-21 06:37:11,077 | INFO     | ..............................
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | 
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | job summary report
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | --------------------------------------------------
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | PanDA job id: 6892534812
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | task id: 47493029
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | errors: (none)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | pilot state: finished 
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | transexitcode: 0
[2025-11-21 07:37:43] 2025-11-21 06:37:11,137 | INFO     | exeerrorcode: 0
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | exeerrordiag: 
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | exitcode: 0
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | exitmsg: OK
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | cpuconsumptiontime: 204571 s
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | nevents: 1000
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | neventsw: 0
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | pid: 61585
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | pgrp: 61585
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | corecount: 12
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | event service: False
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | sizes: {0: 2298796, 4: 2299058, 11: 2299086, 22083: 2334475, 22089: 2343525, 22093: 2343715}
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | --------------------------------------------------
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | 
[2025-11-21 07:37:43] 2025-11-21 06:37:11,138 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-21 07:37:43] 2025-11-21 06:37:11,157 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,157 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,157 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,157 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,157 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,157 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,157 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,157 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,157 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | job 6892534812 has completed (purged errors)
[2025-11-21 07:37:43] 2025-11-21 06:37:11,158 | INFO     | overall cleanup function is called
[2025-11-21 07:37:43] 2025-11-21 06:37:12,172 | INFO     | --- collectZombieJob: --- 10, [61585]
[2025-11-21 07:37:43] 2025-11-21 06:37:12,172 | INFO     | zombie collector waiting for pid 61585
[2025-11-21 07:37:43] 2025-11-21 06:37:12,172 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 07:37:43] 2025-11-21 06:37:12,172 | INFO     | collected zombie processes
[2025-11-21 07:37:43] 2025-11-21 06:37:12,172 | INFO     | will attempt to kill all subprocesses of pid=61585
[2025-11-21 07:37:43] 2025-11-21 06:37:12,287 | INFO     | process IDs to be killed: [61585] (in reverse order)
[2025-11-21 07:37:43] 2025-11-21 06:37:12,331 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 07:37:43] 2025-11-21 06:37:12,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 07:37:43] 2025-11-21 06:37:12,335 | INFO     | did not find any defunct processes belonging to 61585
[2025-11-21 07:37:43] 2025-11-21 06:37:12,339 | INFO     | did not find any defunct processes belonging to 61585
[2025-11-21 07:37:43] 2025-11-21 06:37:12,340 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 07:37:43] 2025-11-21 06:37:12,340 | INFO     | ready for new job
[2025-11-21 07:37:43] 2025-11-21 06:37:12,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 07:37:43] 2025-11-21 06:37:12,342 | INFO     | ***************************************
[2025-11-21 07:37:43] 2025-11-21 06:37:12,342 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 07:37:43] 2025-11-21 06:37:12,342 | INFO     | ***************************************
[2025-11-21 07:37:43] 2025-11-21 06:37:12,342 | INFO     | 
[2025-11-21 07:37:43] 2025-11-21 06:37:12,343 | INFO     | architecture information:
[2025-11-21 07:37:43] 2025-11-21 06:37:12,344 | INFO     | executing command: cat /etc/os-release
[2025-11-21 07:37:43] 2025-11-21 06:37:12,354 | INFO     | cat /etc/os-release:
[2025-11-21 07:37:43] NAME="CentOS Linux"
[2025-11-21 07:37:43] VERSION="7 (Core)"
[2025-11-21 07:37:43] ID="centos"
[2025-11-21 07:37:43] ID_LIKE="rhel fedora"
[2025-11-21 07:37:43] VERSION_ID="7"
[2025-11-21 07:37:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 07:37:43] ANSI_COLOR="0;31"
[2025-11-21 07:37:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 07:37:43] HOME_URL="https://www.centos.org/"
[2025-11-21 07:37:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 07:37:43] 
[2025-11-21 07:37:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 07:37:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 07:37:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 07:37:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 07:37:43] 
[2025-11-21 07:37:43] 2025-11-21 06:37:12,354 | INFO     | ***************************************
[2025-11-21 07:37:43] 2025-11-21 06:37:12,857 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-21 07:37:43] 2025-11-21 06:37:12,869 | INFO     | sufficient remaining disk space (408816713728 B)
[2025-11-21 07:37:43] 2025-11-21 06:37:12,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 07:37:43] 2025-11-21 06:37:12,869 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 07:37:43] 2025-11-21 06:37:12,869 | INFO     | update_server=False
[2025-11-21 07:37:43] 2025-11-21 06:37:12,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 07:37:43] 2025-11-21 06:37:12,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:37:43] 2025-11-21 06:37:12,870 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:37:43] 2025-11-21 06:37:12,870 | INFO     | aborting loop
[2025-11-21 07:37:43] 2025-11-21 06:37:12,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 07:37:43] 2025-11-21 06:37:12,994 | INFO     | all data control threads have been joined
[2025-11-21 07:37:43] 2025-11-21 06:37:13,038 | INFO     | all payload control threads have been joined
[2025-11-21 07:37:43] 2025-11-21 06:37:13,085 | INFO     | all job control threads have been joined
[2025-11-21 07:37:43] 2025-11-21 06:37:13,874 | INFO     | [job] retrieve thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:13,875 | INFO     | [job] job monitor thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:13,875 | INFO     | [job] queue monitor thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:13,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 07:37:43] 2025-11-21 06:37:13,999 | INFO     | [data] control thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:14,032 | INFO     | [payload] validate_post thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:14,043 | INFO     | [payload] control thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:14,090 | INFO     | [job] control thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:14,318 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:14,602 | INFO     | [job] validate thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:14,709 | INFO     | [data] copytool_in thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:14,773 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:14,857 | INFO     | [payload] failed_post thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:14,875 | INFO     | [data] copytool_out thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:15,085 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:15,146 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:17,904 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 07:37:43] 2025-11-21 06:37:19,040 | INFO     | [monitor] cgroup control has ended
[2025-11-21 07:37:43] 2025-11-21 06:37:19,430 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130335358129984)>', '<ExcThread(monitor, started 130335029298944)>']
[2025-11-21 07:37:43] 2025-11-21 06:37:24,455 | INFO     | all workflow threads have been joined
[2025-11-21 07:37:43] 2025-11-21 06:37:24,455 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 07:37:43] 2025-11-21 06:37:24,455 | INFO     | traces error code: 0
[2025-11-21 07:37:43] 2025-11-21 06:37:24,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 07:37:43] 2025-11-21 06:37:43,029 | INFO     | PID=54919 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 07:37:43] 2025-11-21 06:37:43,030 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 07:37:43] 2025-11-21 06:37:43,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 07:37:43] 2025-11-21 06:37:43,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 07:37:43] 2025-11-21 06:37:43,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 07:37:43] 2025-11-21 06:37:43,030 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 07:37:43] 2025-11-21 06:37:43,030 | INFO     | [monitor] control thread has ended
[2025-11-21 07:37:43] 2025-11-21 06:37:43,110 [wrapper] ==== pilot stdout END ====
[2025-11-21 07:37:43] 2025-11-21 06:37:43,113 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 07:37:43] 2025-11-21 06:37:43,115 [wrapper] pilotpid: 54919
[2025-11-21 07:37:43] 2025-11-21 06:37:43,117 [wrapper] Pilot exit status: 0
[2025-11-21 07:37:43] 2025-11-21 06:37:43,125 [wrapper] pandaids: 6892534812
[2025-11-21 07:37:43] 2025-11-21 06:37:43,150 [wrapper] cleanup supervisor_pilot  106751 54920
[2025-11-21 07:37:43] 2025-11-21 06:37:43,152 [wrapper] Test setup, not cleaning
[2025-11-21 07:37:43] 2025-11-21 06:37:43,154 [wrapper] apfmon messages muted
[2025-11-21 07:37:43] 2025-11-21 06:37:43,156 [wrapper] ==== wrapper stdout END ====
[2025-11-21 07:37:43] 2025-11-21 06:37:43,158 [wrapper] ==== wrapper stderr END ====
[2025-11-21 07:37:43]  *** Error codes and diagnostics ***
[2025-11-21 07:37:43]     "exeErrorCode": 0,
[2025-11-21 07:37:43]     "exeErrorDiag": "",
[2025-11-21 07:37:43]     "pilotErrorCode": 0,
[2025-11-21 07:37:43]     "pilotErrorDiag": "",
[2025-11-21 07:37:43]  *** Listing of results directory ***
[2025-11-21 07:37:43] total 1304196
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc      5112 nov.  19 08:27 queuedata.json
[2025-11-21 07:37:43] -rwx------ 1 boinc boinc     36292 nov.  19 08:27 runpilot2-wrapper.sh
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc    576529 nov.  19 08:27 pilot3.tar.gz
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc       100 nov.  21 01:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 07:37:43] -rwxr-xr-x 1 boinc boinc      7986 nov.  21 01:28 run_atlas
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc       105 nov.  21 01:28 job.xml
[2025-11-21 07:37:43] -rw-r--r-- 2 boinc boinc 410479087 nov.  21 01:28 EVNT.47493027._000179.pool.root.1
[2025-11-21 07:37:43] drwxrwx--x 2 boinc boinc      4096 nov.  21 01:28 shared
[2025-11-21 07:37:43] -rw-r--r-- 2 boinc boinc    590091 nov.  21 01:28 input.tar.gz
[2025-11-21 07:37:43] -rw-r--r-- 2 boinc boinc     15120 nov.  21 01:28 start_atlas.sh
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc         0 nov.  21 01:28 boinc_setup_complete
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc      9545 nov.  21 01:28 init_data.xml
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc         0 nov.  21 01:28 boinc_lockfile
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc      2773 nov.  21 01:28 pandaJob.out
[2025-11-21 07:37:43] -rw------- 1 boinc boinc    989817 nov.  21 01:28 agis_schedconf.cvmfs.json
[2025-11-21 07:37:43] drwx------ 5 boinc boinc      4096 nov.  21 01:28 pilot3
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc       532 nov.  21 07:27 boinc_task_state.xml
[2025-11-21 07:37:43] -rw------- 1 boinc boinc 910680541 nov.  21 07:36 HITS.47493029._001749.pool.root.1
[2025-11-21 07:37:43] -rw------- 1 boinc boinc      1022 nov.  21 07:36 memory_monitor_summary.json
[2025-11-21 07:37:43] -rw------- 1 boinc boinc        95 nov.  21 07:36 pilot_heartbeat.json
[2025-11-21 07:37:43] -rw------- 1 boinc boinc   1526164 nov.  21 07:37 agis_ddmendpoints.agis.ALL.json
[2025-11-21 07:37:43] -rw------- 1 boinc boinc   2114508 nov.  21 07:37 log.47493029._001749.job.log.tgz.1
[2025-11-21 07:37:43] -rw------- 1 boinc boinc      8598 nov.  21 07:37 heartbeat.json
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc        29 nov.  21 07:37 wrapper_checkpoint.txt
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc      8192 nov.  21 07:37 boinc_mmap_file
[2025-11-21 07:37:43] -rw------- 1 boinc boinc       815 nov.  21 07:37 pilotlog.txt
[2025-11-21 07:37:43] -rw------- 1 boinc boinc   3093475 nov.  21 07:37 log.47493029._001749.job.log.1
[2025-11-21 07:37:43] -rw------- 1 boinc boinc       353 nov.  21 07:37 output.list
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc       620 nov.  21 07:37 runtime_log
[2025-11-21 07:37:43] -rw------- 1 boinc boinc   5222400 nov.  21 07:37 result.tar.gz
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc      8764 nov.  21 07:37 runtime_log.err
[2025-11-21 07:37:43] -rw------- 1 boinc boinc       670 nov.  21 07:37 C9pKDmhmrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkpGKDmCTckOo.diag
[2025-11-21 07:37:43] -rw-r--r-- 1 boinc boinc     21484 nov.  21 07:37 stderr.txt
[2025-11-21 07:37:43] HITS file was successfully produced:
[2025-11-21 07:37:43] -rw------- 1 boinc boinc 910680541 nov.  21 07:36 shared/HITS.pool.root.1
[2025-11-21 07:37:43]  *** Contents of shared directory: ***
[2025-11-21 07:37:43] total 1295904
[2025-11-21 07:37:43] -rw-r--r-- 2 boinc boinc 410479087 nov.  21 01:28 ATLAS.root_0
[2025-11-21 07:37:43] -rw-r--r-- 2 boinc boinc    590091 nov.  21 01:28 input.tar.gz
[2025-11-21 07:37:43] -rw-r--r-- 2 boinc boinc     15120 nov.  21 01:28 start_atlas.sh
[2025-11-21 07:37:43] -rw------- 1 boinc boinc 910680541 nov.  21 07:36 HITS.pool.root.1
[2025-11-21 07:37:43] -rw------- 1 boinc boinc   5222400 nov.  21 07:37 result.tar.gz
07:37:44 (51068): run_atlas exited; CPU time 204527.748240
07:37:44 (51068): called boinc_finish(0)

</stderr_txt>
]]>

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