Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:09:30 (112118): wrapper (7.7.26015): starting
22:09:30 (112118): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 22:09:30] Arguments: --nthreads 4
[2025-11-22 22:09:30] Threads: 4
[2025-11-22 22:09:30] Checking for CVMFS
[2025-11-22 22:09:30] No cvmfs_config command found, will try listing directly
[2025-11-22 22:09:30] CVMFS is ok
[2025-11-22 22:09:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 22:09:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 22:09:30] Further information can be found at the LHC@home message board.
[2025-11-22 22:09:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:09:30] Checking for apptainer binary...
[2025-11-22 22:09:30] which: no apptainer in ((null))
[2025-11-22 22:09:30] apptainer is not installed, using version from CVMFS
[2025-11-22 22:09:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:09:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-22 22:09:31] apptainer works
[2025-11-22 22:09:31] Set ATHENA_PROC_NUMBER=4
[2025-11-22 22:09:31] Set ATHENA_CORE_NUMBER=4
[2025-11-22 22:09:31] Starting ATLAS job with PandaID=6892528460
[2025-11-22 22:09:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 14:40:34]  *** The last 200 lines of the pilot log: ***
[2025-11-23 14:40:34] 2025-11-23 13:36:22,806 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 14:40:34] 2025-11-23 13:36:22,827 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2721.7013046875013
[2025-11-23 14:40:34] 2025-11-23 13:36:22,853 | INFO     | monitor loop #3919: job 0:6892528460 is in state 'finished'
[2025-11-23 14:40:34] 2025-11-23 13:36:22,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 14:40:34] 2025-11-23 13:36:22,856 | INFO     | using path: /scratch/boinc/var/slot104/slots/0/PanDA_Pilot-6892528460/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 14:40:34] 2025-11-23 13:36:22,857 | INFO     | extracted standard info from prmon json
[2025-11-23 14:40:34] 2025-11-23 13:36:22,857 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 14:40:34] 2025-11-23 13:36:22,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 14:40:34] 2025-11-23 13:36:22,874 | INFO     | fitting pss+swap vs Time
[2025-11-23 14:40:34] 2025-11-23 13:36:22,876 | INFO     | sum of square deviations: 283006865997.1554
[2025-11-23 14:40:34] 2025-11-23 13:36:22,897 | INFO     | sum of deviations: 661028494449.0868
[2025-11-23 14:40:34] 2025-11-23 13:36:22,897 | INFO     | mean x: 1763875373.5742269
[2025-11-23 14:40:34] 2025-11-23 13:36:22,897 | INFO     | mean y: 2270575.283505155
[2025-11-23 14:40:34] 2025-11-23 13:36:22,897 | INFO     | intersect: -4117671456.798894
[2025-11-23 14:40:34] 2025-11-23 13:36:22,898 | INFO     | chi2: 4.603150057092048
[2025-11-23 14:40:34] 2025-11-23 13:36:22,899 | INFO     | sum of square deviations: 278653048184.6278
[2025-11-23 14:40:34] 2025-11-23 13:36:22,920 | INFO     | sum of deviations: 892345181754.2839
[2025-11-23 14:40:34] 2025-11-23 13:36:22,920 | INFO     | mean x: 1763875221.0746114
[2025-11-23 14:40:34] 2025-11-23 13:36:22,920 | INFO     | mean y: 2278675.0932642487
[2025-11-23 14:40:34] 2025-11-23 13:36:22,920 | INFO     | intersect: -5646270892.176578
[2025-11-23 14:40:34] 2025-11-23 13:36:22,921 | INFO     | chi2: 2.052325548072559
[2025-11-23 14:40:34] 2025-11-23 13:36:22,922 | INFO     | current chi2=2.052325548072559 (change=55.41475896683941 %)
[2025-11-23 14:40:34] 2025-11-23 13:36:22,923 | INFO     | sum of square deviations: 274344056190.74936
[2025-11-23 14:40:34] 2025-11-23 13:36:22,944 | INFO     | sum of deviations: 921815677648.2133
[2025-11-23 14:40:34] 2025-11-23 13:36:22,945 | INFO     | mean x: 1763875068.5739584
[2025-11-23 14:40:34] 2025-11-23 13:36:22,945 | INFO     | mean y: 2279714.2645833334
[2025-11-23 14:40:34] 2025-11-23 13:36:22,945 | INFO     | intersect: -5924466846.972263
[2025-11-23 14:40:34] 2025-11-23 13:36:22,946 | INFO     | chi2: 1.913592098269157
[2025-11-23 14:40:34] 2025-11-23 13:36:22,946 | INFO     | current chi2=1.913592098269157 (change=6.759816927372636 %)
[2025-11-23 14:40:34] 2025-11-23 13:36:22,946 | INFO     | right removable region: 959
[2025-11-23 14:40:34] 2025-11-23 13:36:22,947 | INFO     | sum of square deviations: 278653004264.62787
[2025-11-23 14:40:34] 2025-11-23 13:36:22,968 | INFO     | sum of deviations: 494494231845.7572
[2025-11-23 14:40:34] 2025-11-23 13:36:22,971 | INFO     | mean x: 1763875526.0746114
[2025-11-23 14:40:34] 2025-11-23 13:36:22,971 | INFO     | mean y: 2276396.7533678757
[2025-11-23 14:40:34] 2025-11-23 13:36:22,971 | INFO     | intersect: -3127875656.1183476
[2025-11-23 14:40:34] 2025-11-23 13:36:22,972 | INFO     | chi2: 2.8141934022214192
[2025-11-23 14:40:34] 2025-11-23 13:36:22,972 | INFO     | current chi2=2.8141934022214192 (change=38.863748361068374 %)
[2025-11-23 14:40:34] 2025-11-23 13:36:22,973 | INFO     | sum of square deviations: 274344027094.60013
[2025-11-23 14:40:34] 2025-11-23 13:36:22,993 | INFO     | sum of deviations: 459292775548.57495
[2025-11-23 14:40:34] 2025-11-23 13:36:22,993 | INFO     | mean x: 1763875678.575
[2025-11-23 14:40:34] 2025-11-23 13:36:22,994 | INFO     | mean y: 2277641.790625
[2025-11-23 14:40:34] 2025-11-23 13:36:22,994 | INFO     | intersect: -2950713041.8956814
[2025-11-23 14:40:34] 2025-11-23 13:36:22,995 | INFO     | chi2: 2.779878971767634
[2025-11-23 14:40:34] 2025-11-23 13:36:22,995 | INFO     | current chi2=2.779878971767634 (change=1.2193344788136704 %)
[2025-11-23 14:40:34] 2025-11-23 13:36:22,995 | INFO     | left removable region: 20
[2025-11-23 14:40:34] 2025-11-23 13:36:22,996 | INFO     | sum of square deviations: 256731252971.6313
[2025-11-23 14:40:34] 2025-11-23 13:36:23,015 | INFO     | sum of deviations: 669554553927.5748
[2025-11-23 14:40:34] 2025-11-23 13:36:23,015 | INFO     | mean x: 1763875648.0756123
[2025-11-23 14:40:34] 2025-11-23 13:36:23,015 | INFO     | mean y: 2288643.217252396
[2025-11-23 14:40:34] 2025-11-23 13:36:23,015 | INFO     | intersect: -4597895241.919162
[2025-11-23 14:40:34] 2025-11-23 13:36:23,016 | INFO     | chi2: 0.062108315102383134
[2025-11-23 14:40:34] 2025-11-23 13:36:23,016 | INFO     | current memory leak: 2.61 B/s (using 939 data points, chi2=0.06)
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | could have reported an average CPU frequency of 2697 MHz (36 samples)
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | ..............................
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | . Timing measurements:
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | . get job = 0 s
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | . initial setup = 1 s
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | . payload setup = 9 s
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | . stage-in = 0 s
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | . payload execution = 59138 s
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | . stage-out = 2 s
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | . log creation = 0 s
[2025-11-23 14:40:34] 2025-11-23 13:36:23,018 | INFO     | ..............................
[2025-11-23 14:40:34] 2025-11-23 13:36:23,287 | INFO     | 
[2025-11-23 14:40:34] 2025-11-23 13:36:23,288 | INFO     | job summary report
[2025-11-23 14:40:34] 2025-11-23 13:36:23,288 | INFO     | --------------------------------------------------
[2025-11-23 14:40:34] 2025-11-23 13:36:23,288 | INFO     | PanDA job id: 6892528460
[2025-11-23 14:40:34] 2025-11-23 13:36:23,288 | INFO     | task id: 47493029
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | errors: (none)
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | pilot state: finished 
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | transexitcode: 0
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | exeerrorcode: 0
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | exeerrordiag: 
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | exitcode: 0
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | exitmsg: OK
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | cpuconsumptiontime: 228116 s
[2025-11-23 14:40:34] 2025-11-23 13:36:23,289 | INFO     | nevents: 1000
[2025-11-23 14:40:34] 2025-11-23 13:36:23,290 | INFO     | neventsw: 0
[2025-11-23 14:40:34] 2025-11-23 13:36:23,290 | INFO     | pid: 124044
[2025-11-23 14:40:34] 2025-11-23 13:36:23,290 | INFO     | pgrp: 124044
[2025-11-23 14:40:34] 2025-11-23 13:36:23,290 | INFO     | corecount: 4
[2025-11-23 14:40:34] 2025-11-23 13:36:23,290 | INFO     | event service: False
[2025-11-23 14:40:34] 2025-11-23 13:36:23,290 | INFO     | sizes: {0: 2298808, 7: 2299070, 11: 2299098, 59151: 2353707, 59152: 2353706, 59155: 2362780, 59158: 2362964, 59180: 2363210}
[2025-11-23 14:40:34] 2025-11-23 13:36:23,290 | INFO     | --------------------------------------------------
[2025-11-23 14:40:34] 2025-11-23 13:36:23,290 | INFO     | 
[2025-11-23 14:40:34] 2025-11-23 13:36:23,290 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2025-11-23 14:40:34] 2025-11-23 13:36:23,324 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,325 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,325 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,325 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,326 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,326 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,328 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,328 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,328 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 14:40:34] 2025-11-23 13:36:23,328 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,328 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 14:40:34] 2025-11-23 13:36:23,328 | INFO     | job 6892528460 has completed (purged errors)
[2025-11-23 14:40:34] 2025-11-23 13:36:23,329 | INFO     | overall cleanup function is called
[2025-11-23 14:40:34] 2025-11-23 13:36:24,349 | INFO     | --- collectZombieJob: --- 10, [124044]
[2025-11-23 14:40:34] 2025-11-23 13:36:24,350 | INFO     | zombie collector waiting for pid 124044
[2025-11-23 14:40:34] 2025-11-23 13:36:24,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 14:40:34] 2025-11-23 13:36:24,350 | INFO     | collected zombie processes
[2025-11-23 14:40:34] 2025-11-23 13:36:24,350 | INFO     | will attempt to kill all subprocesses of pid=124044
[2025-11-23 14:40:34] 2025-11-23 13:36:25,261 | INFO     | process IDs to be killed: [124044] (in reverse order)
[2025-11-23 14:40:34] 2025-11-23 13:36:25,551 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 14:40:34] 2025-11-23 13:36:25,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 14:40:34] 2025-11-23 13:36:25,582 | INFO     | did not find any defunct processes belonging to 124044
[2025-11-23 14:40:34] 2025-11-23 13:36:25,613 | INFO     | did not find any defunct processes belonging to 124044
[2025-11-23 14:40:34] 2025-11-23 13:36:25,615 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 14:40:34] 2025-11-23 13:36:25,615 | INFO     | ready for new job
[2025-11-23 14:40:34] 2025-11-23 13:36:25,615 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 14:40:34] 2025-11-23 13:36:25,621 | INFO     | ***************************************
[2025-11-23 14:40:34] 2025-11-23 13:36:25,621 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 14:40:34] 2025-11-23 13:36:25,621 | INFO     | ***************************************
[2025-11-23 14:40:34] 2025-11-23 13:36:25,621 | INFO     | 
[2025-11-23 14:40:34] 2025-11-23 13:36:25,629 | INFO     | architecture information:
[2025-11-23 14:40:34] 2025-11-23 13:36:25,630 | INFO     | executing command: cat /etc/os-release
[2025-11-23 14:40:34] 2025-11-23 13:36:25,649 | INFO     | cat /etc/os-release:
[2025-11-23 14:40:34] NAME="CentOS Linux"
[2025-11-23 14:40:34] VERSION="7 (Core)"
[2025-11-23 14:40:34] ID="centos"
[2025-11-23 14:40:34] ID_LIKE="rhel fedora"
[2025-11-23 14:40:34] VERSION_ID="7"
[2025-11-23 14:40:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 14:40:34] ANSI_COLOR="0;31"
[2025-11-23 14:40:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 14:40:34] HOME_URL="https://www.centos.org/"
[2025-11-23 14:40:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 14:40:34] 
[2025-11-23 14:40:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 14:40:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 14:40:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 14:40:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 14:40:34] 
[2025-11-23 14:40:34] 2025-11-23 13:36:25,650 | INFO     | ***************************************
[2025-11-23 14:40:34] 2025-11-23 13:36:26,153 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2025-11-23 14:40:34] 2025-11-23 13:36:26,180 | INFO     | sufficient remaining disk space (3322702462976 B)
[2025-11-23 14:40:34] 2025-11-23 13:36:26,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 14:40:34] 2025-11-23 13:36:26,181 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 14:40:34] 2025-11-23 13:36:26,181 | INFO     | update_server=False
[2025-11-23 14:40:34] 2025-11-23 13:36:26,181 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 14:40:34] 2025-11-23 13:36:26,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 14:40:34] 2025-11-23 13:36:26,361 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:40:34] 2025-11-23 13:36:26,362 | INFO     | aborting loop
[2025-11-23 14:40:34] 2025-11-23 13:36:26,630 | INFO     | all data control threads have been joined
[2025-11-23 14:40:34] 2025-11-23 13:36:26,682 | INFO     | all job control threads have been joined
[2025-11-23 14:40:34] 2025-11-23 13:36:27,187 | INFO     | [job] retrieve thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:27,367 | INFO     | [job] job monitor thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:27,375 | INFO     | [payload] failed_post thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:27,445 | INFO     | all payload control threads have been joined
[2025-11-23 14:40:34] 2025-11-23 13:36:27,636 | INFO     | [data] control thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:27,688 | INFO     | [job] control thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:27,787 | INFO     | [payload] validate_post thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:28,082 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:28,122 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:28,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:40:34] 2025-11-23 13:36:28,136 | INFO     | [data] copytool_in thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:28,187 | INFO     | [data] copytool_out thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:28,195 | INFO     | [job] validate thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:28,451 | INFO     | [payload] control thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:28,622 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:29,128 | INFO     | [job] queue monitor thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:29,550 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 14:40:34] 2025-11-23 13:36:33,557 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:36,803 | INFO     | job.realtimelogging is not enabled
[2025-11-23 14:40:34] 2025-11-23 13:36:37,809 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 14:40:34] 2025-11-23 13:36:55,442 | INFO     | PID=116124 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 14:40:34] 2025-11-23 13:36:55,442 | INFO     | .. there are 12 such processes running
[2025-11-23 14:40:34] 2025-11-23 13:36:55,443 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 14:40:34] 2025-11-23 13:36:55,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 14:40:34] 2025-11-23 13:36:55,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 14:40:34] 2025-11-23 13:37:23,980 | INFO     | [monitor] cgroup control has ended
[2025-11-23 14:40:34] 2025-11-23 13:37:24,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23080585787200)>', '<ExcThread(monitor, started 23080011294464)>']
[2025-11-23 14:40:34] 2025-11-23 13:37:24,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 14:40:34] 2025-11-23 13:37:24,595 | INFO     | [monitor] control thread has ended
[2025-11-23 14:40:34] 2025-11-23 13:37:29,559 | INFO     | all workflow threads have been joined
[2025-11-23 14:40:34] 2025-11-23 13:37:29,560 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 14:40:34] 2025-11-23 13:37:29,560 | INFO     | traces error code: 0
[2025-11-23 14:40:34] 2025-11-23 13:37:29,560 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 14:40:34] 2025-11-23 13:37:29,698 [wrapper] ==== pilot stdout END ====
[2025-11-23 14:40:34] 2025-11-23 13:37:29,701 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 14:40:34] 2025-11-23 13:37:29,704 [wrapper] pilotpid: 116124
[2025-11-23 14:40:34] 2025-11-23 13:37:29,708 [wrapper] Pilot exit status: 0
[2025-11-23 14:40:34] 2025-11-23 13:37:29,739 [wrapper] pandaids: 6892528460
[2025-11-23 14:40:34] 2025-11-23 13:37:29,918 [wrapper] cleanup supervisor_pilot 1791578 116125
[2025-11-23 14:40:34] 2025-11-23 13:37:29,923 [wrapper] Test setup, not cleaning
[2025-11-23 14:40:34] 2025-11-23 13:37:29,927 [wrapper] apfmon messages muted
[2025-11-23 14:40:34] 2025-11-23 13:37:29,931 [wrapper] ==== wrapper stdout END ====
[2025-11-23 14:40:34] 2025-11-23 13:37:29,934 [wrapper] ==== wrapper stderr END ====
[2025-11-23 14:40:34]  *** Error codes and diagnostics ***
[2025-11-23 14:40:34]     "exeErrorCode": 0,
[2025-11-23 14:40:34]     "exeErrorDiag": "",
[2025-11-23 14:40:34]     "pilotErrorCode": 0,
[2025-11-23 14:40:34]     "pilotErrorDiag": "",
[2025-11-23 14:40:34]  *** Listing of results directory ***
[2025-11-23 14:40:34] total 1323020
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:12 queuedata.json
[2025-11-23 14:40:34] -rwx------ 1 boinc boinc     36292 Nov 19 08:13 runpilot2-wrapper.sh
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc       100 Nov 22 22:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 14:40:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 22:09 run_atlas
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc       105 Nov 22 22:09 job.xml
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc      6687 Nov 22 22:09 init_data.xml
[2025-11-23 14:40:34] -rw-r--r-- 2 boinc boinc 409654716 Nov 22 22:09 EVNT.47493027._000170.pool.root.1
[2025-11-23 14:40:34] -rw-r--r-- 2 boinc boinc     15120 Nov 22 22:09 start_atlas.sh
[2025-11-23 14:40:34] drwxrwx--x 2 boinc boinc      4096 Nov 22 22:09 shared
[2025-11-23 14:40:34] -rw-r--r-- 2 boinc boinc    590101 Nov 22 22:09 input.tar.gz
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc         0 Nov 22 22:09 boinc_lockfile
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc      2773 Nov 22 22:09 pandaJob.out
[2025-11-23 14:40:34] -rw------- 1 boinc boinc    989768 Nov 22 22:09 agis_schedconf.cvmfs.json
[2025-11-23 14:40:34] drwx------ 5 boinc boinc      4096 Nov 22 22:09 pilot3
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc       532 Nov 23 14:28 boinc_task_state.xml
[2025-11-23 14:40:34] -rw------- 1 boinc boinc 921675373 Nov 23 14:35 HITS.47493029._001652.pool.root.1
[2025-11-23 14:40:34] -rw------- 1 boinc boinc      1039 Nov 23 14:35 memory_monitor_summary.json
[2025-11-23 14:40:34] -rw------- 1 boinc boinc   1526164 Nov 23 14:35 agis_ddmendpoints.agis.ALL.json
[2025-11-23 14:40:34] -rw------- 1 boinc boinc   1689782 Nov 23 14:35 log.47493029._001652.job.log.tgz.1
[2025-11-23 14:40:34] -rw------- 1 boinc boinc      8607 Nov 23 14:36 heartbeat.json
[2025-11-23 14:40:34] -rw------- 1 boinc boinc        95 Nov 23 14:36 pilot_heartbeat.json
[2025-11-23 14:40:34] -rw------- 1 boinc boinc      4907 Nov 23 14:37 pilotlog.txt
[2025-11-23 14:40:34] -rw------- 1 boinc boinc   8065860 Nov 23 14:37 log.47493029._001652.job.log.1
[2025-11-23 14:40:34] -rw------- 1 boinc boinc       353 Nov 23 14:37 output.list
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc       620 Nov 23 14:37 runtime_log
[2025-11-23 14:40:34] -rw------- 1 boinc boinc   9779200 Nov 23 14:37 result.tar.gz
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc      9085 Nov 23 14:37 runtime_log.err
[2025-11-23 14:40:34] -rw------- 1 boinc boinc       670 Nov 23 14:37 rhoNDm1Yrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAzFKDmma5fgn.diag
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc        28 Nov 23 14:40 wrapper_checkpoint.txt
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc      8192 Nov 23 14:40 boinc_mmap_file
[2025-11-23 14:40:34] -rw-r--r-- 1 boinc boinc     21088 Nov 23 14:40 stderr.txt
[2025-11-23 14:40:34] HITS file was successfully produced:
[2025-11-23 14:40:34] -rw------- 1 boinc boinc 921675373 Nov 23 14:35 shared/HITS.pool.root.1
[2025-11-23 14:40:34]  *** Contents of shared directory: ***
[2025-11-23 14:40:34] total 1310288
[2025-11-23 14:40:34] -rw-r--r-- 2 boinc boinc 409654716 Nov 22 22:09 ATLAS.root_0
[2025-11-23 14:40:34] -rw-r--r-- 2 boinc boinc     15120 Nov 22 22:09 start_atlas.sh
[2025-11-23 14:40:34] -rw-r--r-- 2 boinc boinc    590101 Nov 22 22:09 input.tar.gz
[2025-11-23 14:40:34] -rw------- 1 boinc boinc 921675373 Nov 23 14:35 HITS.pool.root.1
[2025-11-23 14:40:34] -rw------- 1 boinc boinc   9779200 Nov 23 14:37 result.tar.gz
14:40:36 (112118): run_atlas exited; CPU time 230925.640926
14:40:36 (112118): called boinc_finish(0)

</stderr_txt>
]]>

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