Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:21:00 (257801): wrapper (7.7.26015): starting
00:21:00 (257801): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 00:21:00] Arguments: --nthreads 4
[2025-11-21 00:21:00] Threads: 4
[2025-11-21 00:21:00] Checking for CVMFS
[2025-11-21 00:21:00] No cvmfs_config command found, will try listing directly
[2025-11-21 00:21:01] CVMFS is ok
[2025-11-21 00:21:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:21:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:21:01] Further information can be found at the LHC@home message board.
[2025-11-21 00:21:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:21:01] Checking for apptainer binary...
[2025-11-21 00:21:01] which: no apptainer in ((null))
[2025-11-21 00:21:01] apptainer is not installed, using version from CVMFS
[2025-11-21 00:21:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:21:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-21 00:21:02] apptainer works
[2025-11-21 00:21:02] Set ATHENA_PROC_NUMBER=4
[2025-11-21 00:21:02] Set ATHENA_CORE_NUMBER=4
[2025-11-21 00:21:02] Starting ATLAS job with PandaID=6892528031
[2025-11-21 00:21:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 15:45:44]  *** The last 200 lines of the pilot log: ***
[2025-11-21 15:45:44] 2025-11-21 14:43:18,457 | INFO     | time since job start (55316s) is within the limit (172800.0s)
[2025-11-21 15:45:44] 2025-11-21 14:43:19,413 | INFO     | monitor loop #3744: job 0:6892528031 is in state 'finished'
[2025-11-21 15:45:44] 2025-11-21 14:43:19,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:45:44] 2025-11-21 14:43:19,867 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 15:45:44] 2025-11-21 14:43:19,887 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2694.1416718749997
[2025-11-21 15:45:44] 2025-11-21 14:43:19,912 | INFO     | using path: /scratch/boinc/var/slot104/slots/1/PanDA_Pilot-6892528031/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 15:45:44] 2025-11-21 14:43:19,912 | INFO     | extracted standard info from prmon json
[2025-11-21 15:45:44] 2025-11-21 14:43:19,913 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 15:45:44] 2025-11-21 14:43:19,913 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 15:45:44] 2025-11-21 14:43:19,927 | INFO     | fitting pss+swap vs Time
[2025-11-21 15:45:44] 2025-11-21 14:43:19,928 | INFO     | sum of square deviations: 230601691142.5
[2025-11-21 15:45:44] 2025-11-21 14:43:19,948 | INFO     | sum of deviations: 548802725817.0
[2025-11-21 15:45:44] 2025-11-21 14:43:19,948 | INFO     | mean x: 1763708521.5
[2025-11-21 15:45:44] 2025-11-21 14:43:19,948 | INFO     | mean y: 2280643.6710816775
[2025-11-21 15:45:44] 2025-11-21 14:43:19,948 | INFO     | intersect: -4195121549.47997
[2025-11-21 15:45:44] 2025-11-21 14:43:19,949 | INFO     | chi2: 3.8099709082600035
[2025-11-21 15:45:44] 2025-11-21 14:43:19,950 | INFO     | sum of square deviations: 226804810650.0
[2025-11-21 15:45:44] 2025-11-21 14:43:19,969 | INFO     | sum of deviations: 702652117735.9998
[2025-11-21 15:45:44] 2025-11-21 14:43:19,969 | INFO     | mean x: 1763708369.0
[2025-11-21 15:45:44] 2025-11-21 14:43:19,969 | INFO     | mean y: 2286814.227524972
[2025-11-21 15:45:44] 2025-11-21 14:43:19,969 | INFO     | intersect: -5461765808.796308
[2025-11-21 15:45:44] 2025-11-21 14:43:19,970 | INFO     | chi2: 2.1134476708599177
[2025-11-21 15:45:44] 2025-11-21 14:43:19,970 | INFO     | current chi2=2.1134476708599177 (change=44.52850896373065 %)
[2025-11-21 15:45:44] 2025-11-21 14:43:19,971 | INFO     | sum of square deviations: 223049837920.0
[2025-11-21 15:45:44] 2025-11-21 14:43:19,990 | INFO     | sum of deviations: 688486263690.5004
[2025-11-21 15:45:44] 2025-11-21 14:43:19,990 | INFO     | mean x: 1763708216.5
[2025-11-21 15:45:44] 2025-11-21 14:43:19,990 | INFO     | mean y: 2286238.9274553573
[2025-11-21 15:45:44] 2025-11-21 14:43:19,991 | INFO     | intersect: -5441738699.812214
[2025-11-21 15:45:44] 2025-11-21 14:43:19,991 | INFO     | chi2: 2.1127826895515938
[2025-11-21 15:45:44] 2025-11-21 14:43:19,992 | INFO     | current chi2=2.1127826895515938 (change=0.03146429019713386 %)
[2025-11-21 15:45:44] 2025-11-21 14:43:19,992 | INFO     | right removable region: 895
[2025-11-21 15:45:44] 2025-11-21 14:43:19,993 | INFO     | sum of square deviations: 226804810650.0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,010 | INFO     | sum of deviations: 381367184477.0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,010 | INFO     | mean x: 1763708674.0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,011 | INFO     | mean y: 2287355.28190899
[2025-11-21 15:45:44] 2025-11-21 14:43:20,011 | INFO     | intersect: -2963349084.7626357
[2025-11-21 15:45:44] 2025-11-21 14:43:20,012 | INFO     | chi2: 1.8434712449010628
[2025-11-21 15:45:44] 2025-11-21 14:43:20,012 | INFO     | current chi2=1.8434712449010628 (change=51.61455850215487 %)
[2025-11-21 15:45:44] 2025-11-21 14:43:20,013 | INFO     | sum of square deviations: 223049837920.0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,030 | INFO     | sum of deviations: 370529907702.00024
[2025-11-21 15:45:44] 2025-11-21 14:43:20,030 | INFO     | mean x: 1763708826.5
[2025-11-21 15:45:44] 2025-11-21 14:43:20,030 | INFO     | mean y: 2287794.9598214286
[2025-11-21 15:45:44] 2025-11-21 14:43:20,030 | INFO     | intersect: -2927581488.0236425
[2025-11-21 15:45:44] 2025-11-21 14:43:20,031 | INFO     | chi2: 1.842163377195349
[2025-11-21 15:45:44] 2025-11-21 14:43:20,031 | INFO     | current chi2=1.842163377195349 (change=0.07094592385595286 %)
[2025-11-21 15:45:44] 2025-11-21 14:43:20,032 | INFO     | left removable region: 20
[2025-11-21 15:45:44] 2025-11-21 14:43:20,033 | INFO     | sum of square deviations: 207731336750.0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,051 | INFO     | sum of deviations: 515195695026.00006
[2025-11-21 15:45:44] 2025-11-21 14:43:20,051 | INFO     | mean x: 1763708796.0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,051 | INFO     | mean y: 2293127.754285714
[2025-11-21 15:45:44] 2025-11-21 14:43:20,051 | INFO     | intersect: -4371891302.937728
[2025-11-21 15:45:44] 2025-11-21 14:43:20,052 | INFO     | chi2: 0.11394821156822679
[2025-11-21 15:45:44] 2025-11-21 14:43:20,052 | INFO     | current memory leak: 2.48 B/s (using 875 data points, chi2=0.11)
[2025-11-21 15:45:44] 2025-11-21 14:43:20,053 | INFO     | could have reported an average CPU frequency of 2689 MHz (34 samples)
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | ..............................
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | . Timing measurements:
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | . get job = 0 s
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | . initial setup = 1 s
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | . payload setup = 11 s
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | . stage-in = 0 s
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | . payload execution = 55272 s
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | . stage-out = 2 s
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | . log creation = 0 s
[2025-11-21 15:45:44] 2025-11-21 14:43:20,054 | INFO     | ..............................
[2025-11-21 15:45:44] 2025-11-21 14:43:20,150 | INFO     | 
[2025-11-21 15:45:44] 2025-11-21 14:43:20,151 | INFO     | job summary report
[2025-11-21 15:45:44] 2025-11-21 14:43:20,151 | INFO     | --------------------------------------------------
[2025-11-21 15:45:44] 2025-11-21 14:43:20,151 | INFO     | PanDA job id: 6892528031
[2025-11-21 15:45:44] 2025-11-21 14:43:20,151 | INFO     | task id: 47493029
[2025-11-21 15:45:44] 2025-11-21 14:43:20,151 | INFO     | errors: (none)
[2025-11-21 15:45:44] 2025-11-21 14:43:20,151 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 15:45:44] 2025-11-21 14:43:20,151 | INFO     | pilot state: finished 
[2025-11-21 15:45:44] 2025-11-21 14:43:20,151 | INFO     | transexitcode: 0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | exeerrorcode: 0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | exeerrordiag: 
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | exitcode: 0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | exitmsg: OK
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | cpuconsumptiontime: 219265 s
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | nevents: 1000
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | neventsw: 0
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | pid: 269713
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | pgrp: 269713
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | corecount: 4
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | event service: False
[2025-11-21 15:45:44] 2025-11-21 14:43:20,152 | INFO     | sizes: {0: 2298637, 1: 2298836, 7: 2299098, 11: 2299126, 55287: 2351906, 55290: 2360924, 55293: 2361108, 55299: 2361354}
[2025-11-21 15:45:44] 2025-11-21 14:43:20,153 | INFO     | --------------------------------------------------
[2025-11-21 15:45:44] 2025-11-21 14:43:20,153 | INFO     | 
[2025-11-21 15:45:44] 2025-11-21 14:43:20,153 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/1
[2025-11-21 15:45:44] 2025-11-21 14:43:20,188 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,189 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,189 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,189 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,189 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,189 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 15:45:44] 2025-11-21 14:43:20,190 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,191 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 15:45:44] 2025-11-21 14:43:20,191 | INFO     | job 6892528031 has completed (purged errors)
[2025-11-21 15:45:44] 2025-11-21 14:43:20,191 | INFO     | overall cleanup function is called
[2025-11-21 15:45:44] 2025-11-21 14:43:21,207 | INFO     | --- collectZombieJob: --- 10, [269713]
[2025-11-21 15:45:44] 2025-11-21 14:43:21,208 | INFO     | zombie collector waiting for pid 269713
[2025-11-21 15:45:44] 2025-11-21 14:43:21,208 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 15:45:44] 2025-11-21 14:43:21,208 | INFO     | collected zombie processes
[2025-11-21 15:45:44] 2025-11-21 14:43:21,208 | INFO     | will attempt to kill all subprocesses of pid=269713
[2025-11-21 15:45:44] 2025-11-21 14:43:22,043 | INFO     | process IDs to be killed: [269713] (in reverse order)
[2025-11-21 15:45:44] 2025-11-21 14:43:22,301 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 15:45:44] 2025-11-21 14:43:22,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 15:45:44] 2025-11-21 14:43:22,335 | INFO     | did not find any defunct processes belonging to 269713
[2025-11-21 15:45:44] 2025-11-21 14:43:22,369 | INFO     | did not find any defunct processes belonging to 269713
[2025-11-21 15:45:44] 2025-11-21 14:43:22,370 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 15:45:44] 2025-11-21 14:43:22,370 | INFO     | ready for new job
[2025-11-21 15:45:44] 2025-11-21 14:43:22,371 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 15:45:44] 2025-11-21 14:43:22,378 | INFO     | ***************************************
[2025-11-21 15:45:44] 2025-11-21 14:43:22,378 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 15:45:44] 2025-11-21 14:43:22,378 | INFO     | ***************************************
[2025-11-21 15:45:44] 2025-11-21 14:43:22,378 | INFO     | 
[2025-11-21 15:45:44] 2025-11-21 14:43:22,386 | INFO     | architecture information:
[2025-11-21 15:45:44] 2025-11-21 14:43:22,387 | INFO     | executing command: cat /etc/os-release
[2025-11-21 15:45:44] 2025-11-21 14:43:22,411 | INFO     | cat /etc/os-release:
[2025-11-21 15:45:44] NAME="CentOS Linux"
[2025-11-21 15:45:44] VERSION="7 (Core)"
[2025-11-21 15:45:44] ID="centos"
[2025-11-21 15:45:44] ID_LIKE="rhel fedora"
[2025-11-21 15:45:44] VERSION_ID="7"
[2025-11-21 15:45:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 15:45:44] ANSI_COLOR="0;31"
[2025-11-21 15:45:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 15:45:44] HOME_URL="https://www.centos.org/"
[2025-11-21 15:45:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 15:45:44] 
[2025-11-21 15:45:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 15:45:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 15:45:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 15:45:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 15:45:44] 
[2025-11-21 15:45:44] 2025-11-21 14:43:22,411 | INFO     | ***************************************
[2025-11-21 15:45:44] 2025-11-21 14:43:22,914 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/1
[2025-11-21 15:45:44] 2025-11-21 14:43:22,937 | INFO     | sufficient remaining disk space (3309820706816 B)
[2025-11-21 15:45:44] 2025-11-21 14:43:22,937 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 15:45:44] 2025-11-21 14:43:22,938 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 15:45:44] 2025-11-21 14:43:22,938 | INFO     | update_server=False
[2025-11-21 15:45:44] 2025-11-21 14:43:22,938 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 15:45:44] 2025-11-21 14:43:22,938 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:45:44] 2025-11-21 14:43:22,939 | INFO     | aborting loop
[2025-11-21 15:45:44] 2025-11-21 14:43:23,110 | INFO     | all data control threads have been joined
[2025-11-21 15:45:44] 2025-11-21 14:43:23,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 15:45:44] 2025-11-21 14:43:23,862 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 15:45:44] 2025-11-21 14:43:23,943 | INFO     | [job] retrieve thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:23,944 | INFO     | [job] job monitor thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:24,116 | INFO     | [data] control thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:24,146 | INFO     | [payload] failed_post thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:24,229 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:24,402 | INFO     | all payload control threads have been joined
[2025-11-21 15:45:44] 2025-11-21 14:43:24,511 | INFO     | all job control threads have been joined
[2025-11-21 15:45:44] 2025-11-21 14:43:24,731 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:24,886 | INFO     | [data] copytool_in thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:24,952 | INFO     | [payload] validate_post thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:24,975 | INFO     | [job] validate thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:25,058 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:25,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:45:44] 2025-11-21 14:43:25,344 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:25,405 | INFO     | [payload] control thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:25,499 | INFO     | [data] copytool_out thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:25,517 | INFO     | [job] control thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:26,166 | INFO     | [job] queue monitor thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:27,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 15:45:44] 2025-11-21 14:43:52,583 | INFO     | PID=262342 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 15:45:44] 2025-11-21 14:43:52,583 | INFO     | .. there are 9 such processes running
[2025-11-21 15:45:44] 2025-11-21 14:43:52,585 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 15:45:44] 2025-11-21 14:43:52,585 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 15:45:44] 2025-11-21 14:43:52,585 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 15:45:44] 2025-11-21 14:43:52,817 | INFO     | [monitor] cgroup control has ended
[2025-11-21 15:45:44] 2025-11-21 14:43:54,771 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22599063451456)>', '<ExcThread(monitor, started 22598826034944)>']
[2025-11-21 15:45:44] 2025-11-21 14:43:55,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 15:45:44] 2025-11-21 14:43:55,600 | INFO     | [monitor] control thread has ended
[2025-11-21 15:45:44] 2025-11-21 14:43:59,796 | INFO     | all workflow threads have been joined
[2025-11-21 15:45:44] 2025-11-21 14:43:59,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 15:45:44] 2025-11-21 14:43:59,796 | INFO     | traces error code: 0
[2025-11-21 15:45:44] 2025-11-21 14:43:59,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 15:45:44] 2025-11-21 14:43:59,947 [wrapper] ==== pilot stdout END ====
[2025-11-21 15:45:44] 2025-11-21 14:43:59,951 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 15:45:44] 2025-11-21 14:43:59,955 [wrapper] pilotpid: 262342
[2025-11-21 15:45:44] 2025-11-21 14:43:59,959 [wrapper] Pilot exit status: 0
[2025-11-21 15:45:44] 2025-11-21 14:43:59,974 [wrapper] pandaids: 6892528031
[2025-11-21 15:45:44] 2025-11-21 14:44:00,156 [wrapper] cleanup supervisor_pilot 1606898 262343
[2025-11-21 15:45:44] 2025-11-21 14:44:00,160 [wrapper] Test setup, not cleaning
[2025-11-21 15:45:44] 2025-11-21 14:44:00,163 [wrapper] apfmon messages muted
[2025-11-21 15:45:44] 2025-11-21 14:44:00,167 [wrapper] ==== wrapper stdout END ====
[2025-11-21 15:45:44] 2025-11-21 14:44:00,170 [wrapper] ==== wrapper stderr END ====
[2025-11-21 15:45:44]  *** Error codes and diagnostics ***
[2025-11-21 15:45:44]     "exeErrorCode": 0,
[2025-11-21 15:45:44]     "exeErrorDiag": "",
[2025-11-21 15:45:44]     "pilotErrorCode": 0,
[2025-11-21 15:45:44]     "pilotErrorDiag": "",
[2025-11-21 15:45:44]  *** Listing of results directory ***
[2025-11-21 15:45:44] total 1305972
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:12 queuedata.json
[2025-11-21 15:45:44] -rwx------ 1 boinc boinc     36292 Nov 19 08:12 runpilot2-wrapper.sh
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc       100 Nov 20 23:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 15:45:44] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 23:07 run_atlas
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc       105 Nov 20 23:07 job.xml
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc      6686 Nov 21 00:21 init_data.xml
[2025-11-21 15:45:44] -rw-r--r-- 2 boinc boinc 408711848 Nov 21 00:21 EVNT.47493027._000146.pool.root.1
[2025-11-21 15:45:44] -rw-r--r-- 2 boinc boinc     15120 Nov 21 00:21 start_atlas.sh
[2025-11-21 15:45:44] drwxrwx--x 2 boinc boinc      4096 Nov 21 00:21 shared
[2025-11-21 15:45:44] -rw-r--r-- 2 boinc boinc    590093 Nov 21 00:21 input.tar.gz
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:21 boinc_lockfile
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc      2773 Nov 21 00:21 pandaJob.out
[2025-11-21 15:45:44] -rw------- 1 boinc boinc    989817 Nov 21 00:21 agis_schedconf.cvmfs.json
[2025-11-21 15:45:44] drwx------ 5 boinc boinc      4096 Nov 21 00:21 pilot3
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc       532 Nov 21 15:37 boinc_task_state.xml
[2025-11-21 15:45:44] -rw------- 1 boinc boinc 906127258 Nov 21 15:42 HITS.47493029._001419.pool.root.1
[2025-11-21 15:45:44] -rw------- 1 boinc boinc      1039 Nov 21 15:43 memory_monitor_summary.json
[2025-11-21 15:45:44] -rw------- 1 boinc boinc   1526164 Nov 21 15:43 agis_ddmendpoints.agis.ALL.json
[2025-11-21 15:45:44] -rw------- 1 boinc boinc   1645496 Nov 21 15:43 log.47493029._001419.job.log.tgz.1
[2025-11-21 15:45:44] -rw------- 1 boinc boinc      8594 Nov 21 15:43 heartbeat.json
[2025-11-21 15:45:44] -rw------- 1 boinc boinc        95 Nov 21 15:43 pilot_heartbeat.json
[2025-11-21 15:45:44] -rw------- 1 boinc boinc      4834 Nov 21 15:43 pilotlog.txt
[2025-11-21 15:45:44] -rw------- 1 boinc boinc   7628906 Nov 21 15:44 log.47493029._001419.job.log.1
[2025-11-21 15:45:44] -rw------- 1 boinc boinc       353 Nov 21 15:44 output.list
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc       620 Nov 21 15:44 runtime_log
[2025-11-21 15:45:44] -rw------- 1 boinc boinc   9297920 Nov 21 15:44 result.tar.gz
[2025-11-21 15:45:44] -rw------- 1 boinc boinc       670 Nov 21 15:44 uyTKDm2Xrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqlGKDmdEUHXm.diag
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc      9085 Nov 21 15:44 runtime_log.err
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc        28 Nov 21 15:45 wrapper_checkpoint.txt
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc      8192 Nov 21 15:45 boinc_mmap_file
[2025-11-21 15:45:44] -rw-r--r-- 1 boinc boinc     21060 Nov 21 15:45 stderr.txt
[2025-11-21 15:45:44] HITS file was successfully produced:
[2025-11-21 15:45:44] -rw------- 1 boinc boinc 906127258 Nov 21 15:42 shared/HITS.pool.root.1
[2025-11-21 15:45:44]  *** Contents of shared directory: ***
[2025-11-21 15:45:44] total 1293712
[2025-11-21 15:45:44] -rw-r--r-- 2 boinc boinc 408711848 Nov 21 00:21 ATLAS.root_0
[2025-11-21 15:45:44] -rw-r--r-- 2 boinc boinc     15120 Nov 21 00:21 start_atlas.sh
[2025-11-21 15:45:44] -rw-r--r-- 2 boinc boinc    590093 Nov 21 00:21 input.tar.gz
[2025-11-21 15:45:44] -rw------- 1 boinc boinc 906127258 Nov 21 15:42 HITS.pool.root.1
[2025-11-21 15:45:44] -rw------- 1 boinc boinc   9297920 Nov 21 15:44 result.tar.gz
15:45:46 (257801): run_atlas exited; CPU time 221971.768904
15:45:46 (257801): called boinc_finish(0)

</stderr_txt>
]]>

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