Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:22:00 (3558076): wrapper (7.7.26015): starting
21:22:00 (3558076): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 21:22:00] Arguments: --nthreads 3
[2025-11-21 21:22:00] Threads: 3
[2025-11-21 21:22:00] Checking for CVMFS
[2025-11-21 21:22:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:22:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:22:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:22:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:22:00] 2.9.2.0 2923852 4687 80716 153142 3 81 35513037 36864001 0 130560 0 1760263 99.868 326070 4733 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 21:22:00] CVMFS is ok
[2025-11-21 21:22:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:22:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 21:22:00] Further information can be found at the LHC@home message board.
[2025-11-21 21:22:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:22:00] Checking for apptainer binary...
[2025-11-21 21:22:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:22:00] Running /usr/bin/apptainer --version
[2025-11-21 21:22:00] apptainer version 1.4.1-1.1
[2025-11-21 21:22:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:22:00] magicA161a
[2025-11-21 21:22:00] apptainer works
[2025-11-21 21:22:02] Set ATHENA_PROC_NUMBER=3
[2025-11-21 21:22:02] Set ATHENA_CORE_NUMBER=3
[2025-11-21 21:22:02] Starting ATLAS job with PandaID=6892526954
[2025-11-21 21:22:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 05:00:52]  *** The last 200 lines of the pilot log: ***
[2025-11-22 05:00:52] 2025-11-22 04:00:21,721 | INFO     | --- collectZombieJob: --- 10, [3568236]
[2025-11-22 05:00:52] 2025-11-22 04:00:21,722 | INFO     | zombie collector waiting for pid 3568236
[2025-11-22 05:00:52] 2025-11-22 04:00:21,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 05:00:52] 2025-11-22 04:00:21,722 | INFO     | collected zombie processes
[2025-11-22 05:00:52] 2025-11-22 04:00:21,722 | INFO     | will attempt to kill all subprocesses of pid=3568236
[2025-11-22 05:00:52] 2025-11-22 04:00:21,764 | INFO     | process IDs to be killed: [3568236] (in reverse order)
[2025-11-22 05:00:52] 2025-11-22 04:00:21,788 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 05:00:52] 2025-11-22 04:00:21,789 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 05:00:52] 2025-11-22 04:00:21,790 | INFO     | did not find any defunct processes belonging to 3568236
[2025-11-22 05:00:52] 2025-11-22 04:00:21,791 | INFO     | did not find any defunct processes belonging to 3568236
[2025-11-22 05:00:52] 2025-11-22 04:00:21,791 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 05:00:52] 2025-11-22 04:00:21,791 | INFO     | ready for new job
[2025-11-22 05:00:52] 2025-11-22 04:00:21,791 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 05:00:52] 2025-11-22 04:00:21,793 | INFO     | ***************************************
[2025-11-22 05:00:52] 2025-11-22 04:00:21,793 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 05:00:52] 2025-11-22 04:00:21,793 | INFO     | ***************************************
[2025-11-22 05:00:52] 2025-11-22 04:00:21,793 | INFO     | 
[2025-11-22 05:00:52] 2025-11-22 04:00:21,793 | INFO     | architecture information:
[2025-11-22 05:00:52] 2025-11-22 04:00:21,793 | INFO     | executing command: cat /etc/os-release
[2025-11-22 05:00:52] 2025-11-22 04:00:21,801 | INFO     | cat /etc/os-release:
[2025-11-22 05:00:52] NAME="CentOS Linux"
[2025-11-22 05:00:52] VERSION="7 (Core)"
[2025-11-22 05:00:52] ID="centos"
[2025-11-22 05:00:52] ID_LIKE="rhel fedora"
[2025-11-22 05:00:52] VERSION_ID="7"
[2025-11-22 05:00:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 05:00:52] ANSI_COLOR="0;31"
[2025-11-22 05:00:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 05:00:52] HOME_URL="https://www.centos.org/"
[2025-11-22 05:00:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 05:00:52] 
[2025-11-22 05:00:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 05:00:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 05:00:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 05:00:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 05:00:52] 
[2025-11-22 05:00:52] 2025-11-22 04:00:21,802 | INFO     | ***************************************
[2025-11-22 05:00:52] 2025-11-22 04:00:22,305 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-22 05:00:52] 2025-11-22 04:00:22,318 | INFO     | sufficient remaining disk space (365933101056 B)
[2025-11-22 05:00:52] 2025-11-22 04:00:22,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 05:00:52] 2025-11-22 04:00:22,318 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 05:00:52] 2025-11-22 04:00:22,318 | INFO     | update_server=False
[2025-11-22 05:00:52] 2025-11-22 04:00:22,318 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 05:00:52] 2025-11-22 04:00:22,318 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 05:00:52] 2025-11-22 04:00:22,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:00:52] 2025-11-22 04:00:22,318 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:00:52] 2025-11-22 04:00:22,318 | INFO     | aborting loop
[2025-11-22 05:00:52] 2025-11-22 04:00:22,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 05:00:52] 2025-11-22 04:00:22,773 | INFO     | all job control threads have been joined
[2025-11-22 05:00:52] 2025-11-22 04:00:23,155 | INFO     | all payload control threads have been joined
[2025-11-22 05:00:52] 2025-11-22 04:00:23,324 | INFO     | [job] retrieve thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:23,324 | INFO     | [job] queue monitor thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:23,324 | INFO     | [job] job monitor thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:23,402 | INFO     | [payload] validate_post thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:23,418 | INFO     | all data control threads have been joined
[2025-11-22 05:00:52] 2025-11-22 04:00:23,675 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:23,741 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:23,779 | INFO     | [job] control thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:24,161 | INFO     | [payload] control thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:24,221 | INFO     | [data] copytool_in thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:24,363 | INFO     | [data] copytool_out thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:24,424 | INFO     | [data] control thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:24,454 | INFO     | [payload] failed_post thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:24,579 | INFO     | [job] validate thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:24,581 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:24,620 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:26,325 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 05:00:52] 2025-11-22 04:00:37,062 | INFO     | [monitor] cgroup control has ended
[2025-11-22 05:00:52] 2025-11-22 04:00:39,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139884459829056)>', '<ExcThread(monitor, started 139883972642560)>']
[2025-11-22 05:00:52] 2025-11-22 04:00:44,134 | INFO     | all workflow threads have been joined
[2025-11-22 05:00:52] 2025-11-22 04:00:44,134 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 05:00:52] 2025-11-22 04:00:44,134 | INFO     | traces error code: 0
[2025-11-22 05:00:52] 2025-11-22 04:00:44,134 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 05:00:52] 2025-11-22 04:00:50,940 | INFO     | 27493s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 05:00:52] 2025-11-22 04:00:51,998 | INFO     | PID=3561794 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 05:00:52] 2025-11-22 04:00:51,999 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 05:00:52] 2025-11-22 04:00:51,999 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 05:00:52] 2025-11-22 04:00:51,999 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 05:00:52] 2025-11-22 04:00:51,999 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 05:00:52] 2025-11-22 04:00:51,999 | INFO     | [monitor] control thread has ended
[2025-11-22 05:00:52] 2025-11-22 04:00:52,044 [wrapper] ==== pilot stdout END ====
[2025-11-22 05:00:52] 2025-11-22 04:00:52,047 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 05:00:52] 2025-11-22 04:00:52,049 [wrapper] pilotpid: 3561794
[2025-11-22 05:00:52] 2025-11-22 04:00:52,052 [wrapper] Pilot exit status: 0
[2025-11-22 05:00:52] 2025-11-22 04:00:52,059 [wrapper] pandaids: 6892526954
[2025-11-22 05:00:52] 2025-11-22 04:00:52,074 [wrapper] cleanup supervisor_pilot 3616187 3561795
[2025-11-22 05:00:52] 2025-11-22 04:00:52,076 [wrapper] Test setup, not cleaning
[2025-11-22 05:00:52] 2025-11-22 04:00:52,079 [wrapper] apfmon messages muted
[2025-11-22 05:00:52] 2025-11-22 04:00:52,081 [wrapper] ==== wrapper stdout END ====
[2025-11-22 05:00:52] 2025-11-22 04:00:52,083 [wrapper] ==== wrapper stderr END ====
[2025-11-22 05:00:52]  *** Error codes and diagnostics ***
[2025-11-22 05:00:52]     "exeErrorCode": 0,
[2025-11-22 05:00:52]     "exeErrorDiag": "",
[2025-11-22 05:00:52]     "pilotErrorCode": 0,
[2025-11-22 05:00:52]     "pilotErrorDiag": "",
[2025-11-22 05:00:52]  *** Listing of results directory ***
[2025-11-22 05:00:52] total 1298780
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:10 queuedata.json
[2025-11-22 05:00:52] -rwx------ 1 boinc boinc     36292 Nov 19 08:10 runpilot2-wrapper.sh
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc       100 Nov 21 21:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 05:00:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 21:22 run_atlas
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc       105 Nov 21 21:22 job.xml
[2025-11-22 05:00:52] -rw-r--r-- 2 boinc boinc 409591248 Nov 21 21:22 EVNT.47493027._000120.pool.root.1
[2025-11-22 05:00:52] -rw-r--r-- 2 boinc boinc    590096 Nov 21 21:22 input.tar.gz
[2025-11-22 05:00:52] -rw-r--r-- 2 boinc boinc     15120 Nov 21 21:22 start_atlas.sh
[2025-11-22 05:00:52] drwxrwx--x 2 boinc boinc      4096 Nov 21 21:22 shared
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc         0 Nov 21 21:22 boinc_setup_complete
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc      6448 Nov 21 21:22 init_data.xml
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc         0 Nov 21 21:22 boinc_lockfile
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc      2773 Nov 21 21:22 pandaJob.out
[2025-11-22 05:00:52] -rw------- 1 boinc boinc    989798 Nov 21 21:22 agis_schedconf.cvmfs.json
[2025-11-22 05:00:52] drwx------ 5 boinc boinc      4096 Nov 21 21:22 pilot3
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc       531 Nov 22 04:56 boinc_task_state.xml
[2025-11-22 05:00:52] -rw------- 1 boinc boinc 906393044 Nov 22 04:59 HITS.47493029._001155.pool.root.1
[2025-11-22 05:00:52] -rw------- 1 boinc boinc      1022 Nov 22 05:00 memory_monitor_summary.json
[2025-11-22 05:00:52] -rw------- 1 boinc boinc   1526164 Nov 22 05:00 agis_ddmendpoints.agis.ALL.json
[2025-11-22 05:00:52] -rw------- 1 boinc boinc   1152015 Nov 22 05:00 log.47493029._001155.job.log.tgz.1
[2025-11-22 05:00:52] -rw------- 1 boinc boinc        95 Nov 22 05:00 pilot_heartbeat.json
[2025-11-22 05:00:52] -rw------- 1 boinc boinc      8564 Nov 22 05:00 heartbeat.json
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc      8192 Nov 22 05:00 boinc_mmap_file
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc        28 Nov 22 05:00 wrapper_checkpoint.txt
[2025-11-22 05:00:52] -rw------- 1 boinc boinc       863 Nov 22 05:00 pilotlog.txt
[2025-11-22 05:00:52] -rw------- 1 boinc boinc   3874987 Nov 22 05:00 log.47493029._001155.job.log.1
[2025-11-22 05:00:52] -rw------- 1 boinc boinc       353 Nov 22 05:00 output.list
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc       620 Nov 22 05:00 runtime_log
[2025-11-22 05:00:52] -rw------- 1 boinc boinc   5048320 Nov 22 05:00 result.tar.gz
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc      8798 Nov 22 05:00 runtime_log.err
[2025-11-22 05:00:52] -rw------- 1 boinc boinc       669 Nov 22 05:00 PtyKDmIWrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTjGKDmEfc7en.diag
[2025-11-22 05:00:52] -rw-r--r-- 1 boinc boinc     10979 Nov 22 05:00 stderr.txt
[2025-11-22 05:00:52] HITS file was successfully produced:
[2025-11-22 05:00:52] -rw------- 1 boinc boinc 906393044 Nov 22 04:59 shared/HITS.pool.root.1
[2025-11-22 05:00:52]  *** Contents of shared directory: ***
[2025-11-22 05:00:52] total 1290680
[2025-11-22 05:00:52] -rw-r--r-- 2 boinc boinc 409591248 Nov 21 21:22 ATLAS.root_0
[2025-11-22 05:00:52] -rw-r--r-- 2 boinc boinc    590096 Nov 21 21:22 input.tar.gz
[2025-11-22 05:00:52] -rw-r--r-- 2 boinc boinc     15120 Nov 21 21:22 start_atlas.sh
[2025-11-22 05:00:52] -rw------- 1 boinc boinc 906393044 Nov 22 04:59 HITS.pool.root.1
[2025-11-22 05:00:52] -rw------- 1 boinc boinc   5048320 Nov 22 05:00 result.tar.gz
05:00:53 (3558076): run_atlas exited; CPU time 81124.045959
05:00:53 (3558076): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN