Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:00:56 (3620889): wrapper (7.7.26015): starting
05:00:56 (3620889): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 05:00:56] Arguments: --nthreads 3
[2025-11-22 05:00:56] Threads: 3
[2025-11-22 05:00:56] Checking for CVMFS
[2025-11-22 05:00:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 05:00:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 05:00:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 05:00:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 05:00:57] 2.9.2.0 2923852 5146 82212 153157 1 81 35567514 36864001 0 130560 0 1935620 99.879 344466 4916 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 05:00:57] CVMFS is ok
[2025-11-22 05:00:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 05:00:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 05:00:57] Further information can be found at the LHC@home message board.
[2025-11-22 05:00:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 05:00:57] Checking for apptainer binary...
[2025-11-22 05:00:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 05:00:57] Running /usr/bin/apptainer --version
[2025-11-22 05:00:57] apptainer version 1.4.1-1.1
[2025-11-22 05:00:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 05:00:57] magicA161a
[2025-11-22 05:00:57] apptainer works
[2025-11-22 05:00:57] Set ATHENA_PROC_NUMBER=3
[2025-11-22 05:00:57] Set ATHENA_CORE_NUMBER=3
[2025-11-22 05:00:57] Starting ATLAS job with PandaID=6892528026
[2025-11-22 05:00:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 12:41:40]  *** The last 200 lines of the pilot log: ***
[2025-11-22 12:41:40] 2025-11-22 11:40:51,390 | INFO     | all job control threads have been joined
[2025-11-22 12:41:40] 2025-11-22 11:40:51,687 | INFO     | [data] control thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:51,780 | INFO     | [job] job monitor thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:51,805 | INFO     | [data] copytool_out thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:51,834 | INFO     | [data] copytool_in thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:51,847 | INFO     | [payload] failed_post thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:52,196 | INFO     | [job] validate thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:52,200 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:52,212 | INFO     | [payload] control thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:52,280 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:52,300 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:52,396 | INFO     | [job] control thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:52,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:41:40] 2025-11-22 11:40:53,770 | INFO     | [job] queue monitor thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:40:54,666 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:41:00,633 | INFO     | job.realtimelogging is not enabled
[2025-11-22 12:41:40] 2025-11-22 11:41:01,638 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 12:41:40] 2025-11-22 11:41:19,693 | INFO     | PID=3624607 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 12:41:40] 2025-11-22 11:41:19,694 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 12:41:40] 2025-11-22 11:41:19,694 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 12:41:40] 2025-11-22 11:41:19,694 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 12:41:40] 2025-11-22 11:41:34,502 | INFO     | [monitor] cgroup control has ended
[2025-11-22 12:41:40] 2025-11-22 11:41:35,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140188391315264)>', '<ExcThread(monitor, started 140187891902208)>']
[2025-11-22 12:41:40] 2025-11-22 11:41:35,777 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 12:41:40] 2025-11-22 11:41:35,777 | INFO     | [monitor] control thread has ended
[2025-11-22 12:41:40] 2025-11-22 11:41:40,145 | INFO     | all workflow threads have been joined
[2025-11-22 12:41:40] 2025-11-22 11:41:40,145 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 12:41:40] 2025-11-22 11:41:40,145 | INFO     | traces error code: 0
[2025-11-22 12:41:40] 2025-11-22 11:41:40,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 12:41:40] 2025-11-22 11:41:40,194 [wrapper] ==== pilot stdout END ====
[2025-11-22 12:41:40] 2025-11-22 11:41:40,196 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 12:41:40] 2025-11-22 11:41:40,199 [wrapper] pilotpid: 3624607
[2025-11-22 12:41:40] 2025-11-22 11:41:40,201 [wrapper] Pilot exit status: 0
[2025-11-22 12:41:40] 2025-11-22 11:41:40,209 [wrapper] pandaids: 6892528026
[2025-11-22 12:41:40] 2025-11-22 11:41:40,225 [wrapper] cleanup supervisor_pilot 3677793 3624608
[2025-11-22 12:41:40] 2025-11-22 11:41:40,227 [wrapper] Test setup, not cleaning
[2025-11-22 12:41:40] 2025-11-22 11:41:40,229 [wrapper] apfmon messages muted
[2025-11-22 12:41:40] 2025-11-22 11:41:40,232 [wrapper] ==== wrapper stdout END ====
[2025-11-22 12:41:40] 2025-11-22 11:41:40,234 [wrapper] ==== wrapper stderr END ====
[2025-11-22 12:41:40]  *** Error codes and diagnostics ***
[2025-11-22 12:41:40]     "exeErrorCode": 0,
[2025-11-22 12:41:40]     "exeErrorDiag": "",
[2025-11-22 12:41:40]     "pilotErrorCode": 0,
[2025-11-22 12:41:40]     "pilotErrorDiag": "",
[2025-11-22 12:41:40]  *** Listing of results directory ***
[2025-11-22 12:41:40] total 1301500
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-22 12:41:40] -rwx------ 1 boinc boinc     36292 Nov 19 08:11 runpilot2-wrapper.sh
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:12 queuedata.json
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc       100 Nov 22 05:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 12:41:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 05:00 run_atlas
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc       105 Nov 22 05:00 job.xml
[2025-11-22 12:41:40] -rw-r--r-- 2 boinc boinc 408711848 Nov 22 05:00 EVNT.47493027._000146.pool.root.1
[2025-11-22 12:41:40] -rw-r--r-- 2 boinc boinc    590095 Nov 22 05:00 input.tar.gz
[2025-11-22 12:41:40] -rw-r--r-- 2 boinc boinc     15120 Nov 22 05:00 start_atlas.sh
[2025-11-22 12:41:40] drwxrwx--x 2 boinc boinc      4096 Nov 22 05:00 shared
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc         0 Nov 22 05:00 boinc_setup_complete
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc      6448 Nov 22 05:00 init_data.xml
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc         0 Nov 22 05:00 boinc_lockfile
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc      2773 Nov 22 05:00 pandaJob.out
[2025-11-22 12:41:40] -rw------- 1 boinc boinc    989752 Nov 22 05:01 agis_schedconf.cvmfs.json
[2025-11-22 12:41:40] drwx------ 5 boinc boinc      4096 Nov 22 05:01 pilot3
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc       531 Nov 22 12:35 boinc_task_state.xml
[2025-11-22 12:41:40] -rw------- 1 boinc boinc 910038387 Nov 22 12:40 HITS.47493029._001414.pool.root.1
[2025-11-22 12:41:40] -rw------- 1 boinc boinc      1021 Nov 22 12:40 memory_monitor_summary.json
[2025-11-22 12:41:40] -rw------- 1 boinc boinc   1526164 Nov 22 12:40 agis_ddmendpoints.agis.ALL.json
[2025-11-22 12:41:40] -rw------- 1 boinc boinc   1150553 Nov 22 12:40 log.47493029._001414.job.log.tgz.1
[2025-11-22 12:41:40] -rw------- 1 boinc boinc      8564 Nov 22 12:40 heartbeat.json
[2025-11-22 12:41:40] -rw------- 1 boinc boinc        95 Nov 22 12:41 pilot_heartbeat.json
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc      8192 Nov 22 12:41 boinc_mmap_file
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc        28 Nov 22 12:41 wrapper_checkpoint.txt
[2025-11-22 12:41:40] -rw------- 1 boinc boinc      4824 Nov 22 12:41 pilotlog.txt
[2025-11-22 12:41:40] -rw------- 1 boinc boinc   3887552 Nov 22 12:41 log.47493029._001414.job.log.1
[2025-11-22 12:41:40] -rw------- 1 boinc boinc       353 Nov 22 12:41 output.list
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc       620 Nov 22 12:41 runtime_log
[2025-11-22 12:41:40] -rw------- 1 boinc boinc   5058560 Nov 22 12:41 result.tar.gz
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc      8798 Nov 22 12:41 runtime_log.err
[2025-11-22 12:41:40] -rw------- 1 boinc boinc       669 Nov 22 12:41 JGfLDmHXrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPlGKDm8KY0on.diag
[2025-11-22 12:41:40] -rw-r--r-- 1 boinc boinc      6429 Nov 22 12:41 stderr.txt
[2025-11-22 12:41:40] HITS file was successfully produced:
[2025-11-22 12:41:40] -rw------- 1 boinc boinc 910038387 Nov 22 12:40 shared/HITS.pool.root.1
[2025-11-22 12:41:40]  *** Contents of shared directory: ***
[2025-11-22 12:41:40] total 1293392
[2025-11-22 12:41:40] -rw-r--r-- 2 boinc boinc 408711848 Nov 22 05:00 ATLAS.root_0
[2025-11-22 12:41:40] -rw-r--r-- 2 boinc boinc    590095 Nov 22 05:00 input.tar.gz
[2025-11-22 12:41:40] -rw-r--r-- 2 boinc boinc     15120 Nov 22 05:00 start_atlas.sh
[2025-11-22 12:41:40] -rw------- 1 boinc boinc 910038387 Nov 22 12:40 HITS.pool.root.1
[2025-11-22 12:41:40] -rw------- 1 boinc boinc   5058560 Nov 22 12:41 result.tar.gz
12:41:41 (3620889): run_atlas exited; CPU time 81246.462708
12:41:41 (3620889): called boinc_finish(0)

</stderr_txt>
]]>

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