Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:53:42 (2411820): wrapper (7.7.26015): starting
02:53:42 (2411820): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 02:53:42] Arguments: --nthreads 8
[2025-11-19 02:53:42] Threads: 8
[2025-11-19 02:53:42] Checking for CVMFS
[2025-11-19 02:53:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 02:53:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 02:53:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 02:53:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 02:53:43] 2.11.3.0 52815 18210 230444 153041 3 328 24171180 45568000 10777 130560 0 109405969 99.819 62240452 29112 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-19 02:53:43] CVMFS is ok
[2025-11-19 02:53:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 02:53:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 02:53:43] Further information can be found at the LHC@home message board.
[2025-11-19 02:53:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 02:53:43] Checking for apptainer binary...
[2025-11-19 02:53:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 02:53:43] Running /usr/bin/apptainer --version
[2025-11-19 02:53:43] apptainer version 1.4.1-1.el9
[2025-11-19 02:53:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 02:53:43] wns0013.triumf.lcg
[2025-11-19 02:53:43] apptainer works
[2025-11-19 02:53:43] Set ATHENA_PROC_NUMBER=8
[2025-11-19 02:53:43] Set ATHENA_CORE_NUMBER=8
[2025-11-19 02:53:43] Starting ATLAS job with PandaID=6892548737
[2025-11-19 02:53:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 02:59:07]  *** The last 200 lines of the pilot log: ***
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 02:59:07] 2025-11-19 10:58:22,920 | WARNING  | wrong length of table data, x=[1763549682.0, 1763549743.0], y=[2106.0, 374995.0] (must be same and length>=4)
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | ..............................
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . Timing measurements:
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . get job = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . initial setup = 3 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . payload setup = 12 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . stage-in = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | . payload execution = 95 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | . stage-out = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | . log creation = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | ..............................
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892548737/pilotlog.txt
[2025-11-19 02:59:07] 2025-11-19 10:58:22,936 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-19 02:59:07] - Log from pilotlog.txt -
[2025-11-19 02:59:07] 2025-11-19 10:58:22,918 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892548737/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | INFO     | extracted standard info from prmon json
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 02:59:07] 2025-11-19 10:58:22,920 | WARNING  | wrong length of table data, x=[1763549682.0, 1763549743.0], y=[2106.0, 374995.0] (must be same and length>=4)
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | ..............................
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . Timing measurements:
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . get job = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . initial setup = 3 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . payload setup = 12 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . stage-in = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | . payload execution = 95 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | . stage-out = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | . log creation = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | ..............................
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892548737/pilotlog.txt
[2025-11-19 02:59:07] 2025-11-19 10:58:22,937 | WARNING  | 
[2025-11-19 02:59:07] [begin log extracts]
[2025-11-19 02:59:07] - Log from pilotlog.txt -
[2025-11-19 02:59:07] 2025-11-19 10:58:22,918 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892548737/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | INFO     | extracted standard info from prmon json
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 02:59:07] 2025-11-19 10:58:22,919 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 02:59:07] 2025-11-19 10:58:22,920 | WARNING  | wrong length of table data, x=[1763549682.0, 1763549743.0], y=[2106.0, 374995.0] (must be same and length>=4)
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | ..............................
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . Timing measurements:
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . get job = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . initial setup = 3 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . payload setup = 12 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,921 | INFO     | . stage-in = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | . payload execution = 95 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | . stage-out = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | . log creation = 0 s
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | ..............................
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 02:59:07] 2025-11-19 10:58:22,922 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892548737/pilotlog.txt
[2025-11-19 02:59:07] [end log extracts]
[2025-11-19 02:59:07] 2025-11-19 10:58:22,937 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-19 02:59:07] 2025-11-19 10:58:22,938 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-19 02:59:07] 2025-11-19 10:58:23,017 | INFO     | 
[2025-11-19 02:59:07] 2025-11-19 10:58:23,017 | INFO     | job summary report
[2025-11-19 02:59:07] 2025-11-19 10:58:23,017 | INFO     | --------------------------------------------------
[2025-11-19 02:59:07] 2025-11-19 10:58:23,017 | INFO     | PanDA job id: 6892548737
[2025-11-19 02:59:07] 2025-11-19 10:58:23,017 | INFO     | task id: 47493029
[2025-11-19 02:59:07] 2025-11-19 10:58:23,017 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-19 02:56:06,818 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-19 02:59:07] 2025-11-19 10:58:23,017 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | pilot state: failed 
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | transexitcode: 65
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | exeerrorcode: 65
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | exitcode: 65
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | cpuconsumptiontime: 51 s
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | nevents: 0
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | neventsw: 0
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | pid: 2422114
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | pgrp: 2422114
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | corecount: 8
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | event service: False
[2025-11-19 02:59:07] 2025-11-19 10:58:23,018 | INFO     | sizes: {0: 2297191, 9: 2297453, 11: 2297481, 112: 2322887, 113: 2327177, 116: 2327205, 241: 2327527}
[2025-11-19 02:59:07] 2025-11-19 10:58:23,019 | INFO     | --------------------------------------------------
[2025-11-19 02:59:07] 2025-11-19 10:58:23,019 | INFO     | 
[2025-11-19 02:59:07] 2025-11-19 10:58:23,019 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-19 02:59:07] 2025-11-19 10:58:23,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,035 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,035 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 02:59:07] 2025-11-19 10:58:23,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 02:59:07] 2025-11-19 10:58:23,037 | INFO     | job 6892548737 has completed (purged errors)
[2025-11-19 02:59:07] 2025-11-19 10:58:23,037 | INFO     | overall cleanup function is called
[2025-11-19 02:59:07] 2025-11-19 10:58:24,044 | INFO     | --- collectZombieJob: --- 10, [2422114]
[2025-11-19 02:59:07] 2025-11-19 10:58:24,044 | INFO     | zombie collector waiting for pid 2422114
[2025-11-19 02:59:07] 2025-11-19 10:58:24,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 02:59:07] 2025-11-19 10:58:24,044 | INFO     | collected zombie processes
[2025-11-19 02:59:07] 2025-11-19 10:58:24,044 | INFO     | will attempt to kill all subprocesses of pid=2422114
[2025-11-19 02:59:07] 2025-11-19 10:58:24,318 | INFO     | process IDs to be killed: [2422114] (in reverse order)
[2025-11-19 02:59:07] 2025-11-19 10:58:24,383 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 02:59:07] 2025-11-19 10:58:24,384 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 02:59:07] 2025-11-19 10:58:24,401 | INFO     | did not find any defunct processes belonging to 2422114
[2025-11-19 02:59:07] 2025-11-19 10:58:24,408 | INFO     | did not find any defunct processes belonging to 2422114
[2025-11-19 02:59:07] 2025-11-19 10:58:24,409 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 02:59:07] 2025-11-19 10:58:24,409 | INFO     | ready for new job
[2025-11-19 02:59:07] 2025-11-19 10:58:24,409 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 02:59:07] 2025-11-19 10:58:24,411 | INFO     | ***************************************
[2025-11-19 02:59:07] 2025-11-19 10:58:24,411 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 02:59:07] 2025-11-19 10:58:24,411 | INFO     | ***************************************
[2025-11-19 02:59:07] 2025-11-19 10:58:24,411 | INFO     | 
[2025-11-19 02:59:07] 2025-11-19 10:58:24,412 | INFO     | architecture information:
[2025-11-19 02:59:07] 2025-11-19 10:58:24,413 | INFO     | executing command: cat /etc/os-release
[2025-11-19 02:59:07] 2025-11-19 10:58:24,431 | INFO     | cat /etc/os-release:
[2025-11-19 02:59:07] NAME="CentOS Linux"
[2025-11-19 02:59:07] VERSION="7 (Core)"
[2025-11-19 02:59:07] ID="centos"
[2025-11-19 02:59:07] ID_LIKE="rhel fedora"
[2025-11-19 02:59:07] VERSION_ID="7"
[2025-11-19 02:59:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 02:59:07] ANSI_COLOR="0;31"
[2025-11-19 02:59:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 02:59:07] HOME_URL="https://www.centos.org/"
[2025-11-19 02:59:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 02:59:07] 
[2025-11-19 02:59:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 02:59:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 02:59:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 02:59:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 02:59:07] 
[2025-11-19 02:59:07] 2025-11-19 10:58:24,432 | INFO     | ***************************************
[2025-11-19 02:59:07] 2025-11-19 10:58:24,934 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-19 02:59:07] 2025-11-19 10:58:24,950 | INFO     | sufficient remaining disk space (1308175106048 B)
[2025-11-19 02:59:07] 2025-11-19 10:58:24,950 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 02:59:07] 2025-11-19 10:58:24,950 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 02:59:07] 2025-11-19 10:58:24,950 | INFO     | update_server=False
[2025-11-19 02:59:07] 2025-11-19 10:58:24,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 02:59:07] 2025-11-19 10:58:24,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 02:59:07] 2025-11-19 10:58:24,951 | INFO     | aborting loop
[2025-11-19 02:59:07] 2025-11-19 10:58:24,951 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 02:59:07] 2025-11-19 10:58:25,527 | INFO     | all payload control threads have been joined
[2025-11-19 02:59:07] 2025-11-19 10:58:25,855 | INFO     | all data control threads have been joined
[2025-11-19 02:59:07] 2025-11-19 10:58:25,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 02:59:07] 2025-11-19 10:58:25,955 | INFO     | [job] retrieve thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:25,956 | INFO     | [job] job monitor thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:25,956 | INFO     | [job] queue monitor thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:25,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 02:59:07] 2025-11-19 10:58:26,017 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:26,315 | INFO     | all job control threads have been joined
[2025-11-19 02:59:07] 2025-11-19 10:58:26,511 | INFO     | [payload] validate_post thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:26,553 | INFO     | [payload] control thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:26,722 | INFO     | [data] copytool_in thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:26,870 | INFO     | [data] control thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:26,896 | INFO     | [payload] failed_post thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:27,017 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:27,222 | INFO     | [job] validate thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:27,236 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:27,265 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:27,321 | INFO     | [job] control thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:27,979 | INFO     | [data] copytool_out thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:29,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 02:59:07] 2025-11-19 10:58:54,540 | INFO     | PID=2415491 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 02:59:07] 2025-11-19 10:58:54,548 | INFO     | .. there are 19 such processes running
[2025-11-19 02:59:07] 2025-11-19 10:58:54,548 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 02:59:07] 2025-11-19 10:58:54,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 02:59:07] 2025-11-19 10:58:54,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 02:59:07] 2025-11-19 10:59:00,589 | INFO     | [monitor] cgroup control has ended
[2025-11-19 02:59:07] 2025-11-19 10:59:01,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140588623513408)>', '<ExcThread(monitor, started 140588062058240)>']
[2025-11-19 02:59:07] 2025-11-19 10:59:02,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 02:59:07] 2025-11-19 10:59:02,595 | INFO     | [monitor] control thread has ended
[2025-11-19 02:59:07] 2025-11-19 10:59:06,765 | INFO     | all workflow threads have been joined
[2025-11-19 02:59:07] 2025-11-19 10:59:06,765 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 02:59:07] 2025-11-19 10:59:06,766 | INFO     | traces error code: 0
[2025-11-19 02:59:07] 2025-11-19 10:59:06,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 02:59:07] 2025-11-19 10:59:06,932 [wrapper] ==== pilot stdout END ====
[2025-11-19 02:59:07] 2025-11-19 10:59:06,934 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 02:59:07] 2025-11-19 10:59:06,936 [wrapper] pilotpid: 2415491
[2025-11-19 02:59:07] 2025-11-19 10:59:06,940 [wrapper] Pilot exit status: 0
[2025-11-19 02:59:07] 2025-11-19 10:59:06,983 [wrapper] pandaids: 6892548737
[2025-11-19 02:59:07] 2025-11-19 10:59:07,019 [wrapper] cleanup supervisor_pilot 2415497 2415492
[2025-11-19 02:59:07] 2025-11-19 10:59:07,028 [wrapper] Test setup, not cleaning
[2025-11-19 02:59:07] 2025-11-19 10:59:07,035 [wrapper] apfmon messages muted
[2025-11-19 02:59:07] 2025-11-19 10:59:07,038 [wrapper] ==== wrapper stdout END ====
[2025-11-19 02:59:07] 2025-11-19 10:59:07,040 [wrapper] ==== wrapper stderr END ====
[2025-11-19 02:59:07]  *** Error codes and diagnostics ***
[2025-11-19 02:59:07]     "exeErrorCode": 65,
[2025-11-19 02:59:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-19 02:59:07]     "pilotErrorCode": 1305,
[2025-11-19 02:59:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-19 02:59:07]  *** Listing of results directory ***
[2025-11-19 02:59:07] total 404520
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc    576529 Nov 19 00:32 pilot3.tar.gz
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc      5112 Nov 19 00:42 queuedata.json
[2025-11-19 02:59:07] -rwx------. 1 boinc boinc     36292 Nov 19 00:43 runpilot2-wrapper.sh
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc       100 Nov 19 02:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 02:59:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 02:53 run_atlas
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc       105 Nov 19 02:53 job.xml
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc      6445 Nov 19 02:53 init_data.xml
[2025-11-19 02:59:07] -rw-r--r--. 2 boinc boinc 410009446 Nov 19 02:53 EVNT.47493027._000342.pool.root.1
[2025-11-19 02:59:07] -rw-r--r--. 2 boinc boinc     15120 Nov 19 02:53 start_atlas.sh
[2025-11-19 02:59:07] drwxrwx--x. 2 boinc boinc      4096 Nov 19 02:53 shared
[2025-11-19 02:59:07] -rw-r--r--. 2 boinc boinc    590101 Nov 19 02:53 input.tar.gz
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc         0 Nov 19 02:53 boinc_lockfile
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc      2770 Nov 19 02:53 pandaJob.out
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc    989442 Nov 19 02:53 agis_schedconf.cvmfs.json
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc   1525063 Nov 19 02:53 agis_ddmendpoints.agis.ALL.json
[2025-11-19 02:59:07] drwx------. 5 boinc boinc      4096 Nov 19 02:54 pilot3
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc       524 Nov 19 02:55 boinc_task_state.xml
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc       986 Nov 19 02:56 memory_monitor_summary.json
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc     48363 Nov 19 02:56 log.47493029._003371.job.log.tgz.1
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc        95 Nov 19 02:58 pilot_heartbeat.json
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc     10326 Nov 19 02:58 heartbeat.json
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc      8192 Nov 19 02:59 boinc_mmap_file
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc        23 Nov 19 02:59 wrapper_checkpoint.txt
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc      4823 Nov 19 02:59 pilotlog.txt
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc     99141 Nov 19 02:59 log.47493029._003371.job.log.1
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc       186 Nov 19 02:59 output.list
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc       620 Nov 19 02:59 runtime_log
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc    174080 Nov 19 02:59 result.tar.gz
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc       645 Nov 19 02:59 vXKNDmRxsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmP8FKDmsicyFm.diag
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc      8526 Nov 19 02:59 runtime_log.err
[2025-11-19 02:59:07] -rw-r--r--. 1 boinc boinc     22463 Nov 19 02:59 stderr.txt
[2025-11-19 02:59:07] No HITS result produced
[2025-11-19 02:59:07]  *** Contents of shared directory: ***
[2025-11-19 02:59:07] total 401172
[2025-11-19 02:59:07] -rw-r--r--. 2 boinc boinc 410009446 Nov 19 02:53 ATLAS.root_0
[2025-11-19 02:59:07] -rw-r--r--. 2 boinc boinc     15120 Nov 19 02:53 start_atlas.sh
[2025-11-19 02:59:07] -rw-r--r--. 2 boinc boinc    590101 Nov 19 02:53 input.tar.gz
[2025-11-19 02:59:07] -rw-------. 1 boinc boinc    174080 Nov 19 02:59 result.tar.gz
02:59:08 (2411820): run_atlas exited; CPU time 51.813668
02:59:08 (2411820): called boinc_finish(0)

</stderr_txt>
]]>

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