Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:47:37 (1721131): wrapper (7.7.26015): starting
23:47:37 (1721131): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 23:47:37] Arguments: --nthreads 4
[2025-11-20 23:47:37] Threads: 4
[2025-11-20 23:47:37] Checking for CVMFS
[2025-11-20 23:47:37] No cvmfs_config command found, will try listing directly
[2025-11-20 23:47:37] CVMFS is ok
[2025-11-20 23:47:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:47:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:47:37] Further information can be found at the LHC@home message board.
[2025-11-20 23:47:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:47:37] Checking for apptainer binary...
[2025-11-20 23:47:37] which: no apptainer in ((null))
[2025-11-20 23:47:37] apptainer is not installed, using version from CVMFS
[2025-11-20 23:47:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:47:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-11-20 23:47:37] apptainer works
[2025-11-20 23:47:37] Set ATHENA_PROC_NUMBER=4
[2025-11-20 23:47:37] Set ATHENA_CORE_NUMBER=4
[2025-11-20 23:47:37] Starting ATLAS job with PandaID=6892526575
[2025-11-20 23:47:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:44:55]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:44:55] 2025-11-21 17:40:49,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:44:55] 2025-11-21 17:40:50,728 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 18:44:55] 2025-11-21 17:40:50,738 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2735.747140625
[2025-11-21 18:44:55] 2025-11-21 17:40:50,751 | INFO     | using path: /scratch/boinc/var/slot48/slots/1/PanDA_Pilot-6892526575/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 18:44:55] 2025-11-21 17:40:50,752 | INFO     | extracted standard info from prmon json
[2025-11-21 18:44:55] 2025-11-21 17:40:50,752 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 18:44:55] 2025-11-21 17:40:50,752 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 18:44:55] 2025-11-21 17:40:50,773 | INFO     | fitting pss+swap vs Time
[2025-11-21 18:44:55] 2025-11-21 17:40:50,775 | INFO     | sum of square deviations: 428682978474.7655
[2025-11-21 18:44:55] 2025-11-21 17:40:50,799 | INFO     | sum of deviations: 1171741233846.2449
[2025-11-21 18:44:55] 2025-11-21 17:40:50,799 | INFO     | mean x: 1763712840.6633751
[2025-11-21 18:44:55] 2025-11-21 17:40:50,799 | INFO     | mean y: 2286995.339317774
[2025-11-21 18:44:55] 2025-11-21 17:40:50,800 | INFO     | intersect: -4818560026.444218
[2025-11-21 18:44:55] 2025-11-21 17:40:50,801 | INFO     | chi2: 4.074223488994733
[2025-11-21 18:44:55] 2025-11-21 17:40:50,803 | INFO     | sum of square deviations: 422936721592.1313
[2025-11-21 18:44:55] 2025-11-21 17:40:50,826 | INFO     | sum of deviations: 1417263627427.4778
[2025-11-21 18:44:55] 2025-11-21 17:40:50,827 | INFO     | mean x: 1763712688.1641119
[2025-11-21 18:44:55] 2025-11-21 17:40:50,827 | INFO     | mean y: 2293508.991884581
[2025-11-21 18:44:55] 2025-11-21 17:40:50,827 | INFO     | intersect: -5907918857.429039
[2025-11-21 18:44:55] 2025-11-21 17:40:50,829 | INFO     | chi2: 1.73572747196009
[2025-11-21 18:44:55] 2025-11-21 17:40:50,829 | INFO     | current chi2=1.73572747196009 (change=57.3973426679065 %)
[2025-11-21 18:44:55] 2025-11-21 17:40:50,830 | INFO     | sum of square deviations: 417242047071.997
[2025-11-21 18:44:55] 2025-11-21 17:40:50,854 | INFO     | sum of deviations: 1419394274336.3596
[2025-11-21 18:44:55] 2025-11-21 17:40:50,855 | INFO     | mean x: 1763712535.664855
[2025-11-21 18:44:55] 2025-11-21 17:40:50,855 | INFO     | mean y: 2293565.0144927534
[2025-11-21 18:44:55] 2025-11-21 17:40:50,855 | INFO     | intersect: -5997589457.958942
[2025-11-21 18:44:55] 2025-11-21 17:40:50,856 | INFO     | chi2: 1.714168698467146
[2025-11-21 18:44:55] 2025-11-21 17:40:50,857 | INFO     | current chi2=1.714168698467146 (change=1.2420598187916214 %)
[2025-11-21 18:44:55] 2025-11-21 17:40:50,857 | INFO     | right removable region: 1103
[2025-11-21 18:44:55] 2025-11-21 17:40:50,858 | INFO     | sum of square deviations: 422936610572.1319
[2025-11-21 18:44:55] 2025-11-21 17:40:50,881 | INFO     | sum of deviations: 992995115159.8756
[2025-11-21 18:44:55] 2025-11-21 17:40:50,882 | INFO     | mean x: 1763712993.1641119
[2025-11-21 18:44:55] 2025-11-21 17:40:50,882 | INFO     | mean y: 2291730.1325518484
[2025-11-21 18:44:55] 2025-11-21 17:40:50,882 | INFO     | intersect: -4138655974.5052614
[2025-11-21 18:44:55] 2025-11-21 17:40:50,884 | INFO     | chi2: 2.4423078187648284
[2025-11-21 18:44:55] 2025-11-21 17:40:50,884 | INFO     | current chi2=2.4423078187648284 (change=40.054642918780104 %)
[2025-11-21 18:44:55] 2025-11-21 17:40:50,885 | INFO     | sum of square deviations: 417241825031.9971
[2025-11-21 18:44:55] 2025-11-21 17:40:50,909 | INFO     | sum of deviations: 963484270327.2402
[2025-11-21 18:44:55] 2025-11-21 17:40:50,909 | INFO     | mean x: 1763713145.664855
[2025-11-21 18:44:55] 2025-11-21 17:40:50,909 | INFO     | mean y: 2292519.954710145
[2025-11-21 18:44:55] 2025-11-21 17:40:50,909 | INFO     | intersect: -4070429271.7476177
[2025-11-21 18:44:55] 2025-11-21 17:40:50,911 | INFO     | chi2: 2.4331149482812506
[2025-11-21 18:44:55] 2025-11-21 17:40:50,911 | INFO     | current chi2=2.4331149482812506 (change=0.3764009766888005 %)
[2025-11-21 18:44:55] 2025-11-21 17:40:50,911 | INFO     | left removable region: 20
[2025-11-21 18:44:55] 2025-11-21 17:40:50,912 | INFO     | sum of square deviations: 393882000935.4144
[2025-11-21 18:44:55] 2025-11-21 17:40:50,935 | INFO     | sum of deviations: 1172711659598.345
[2025-11-21 18:44:55] 2025-11-21 17:40:50,935 | INFO     | mean x: 1763713115.1680517
[2025-11-21 18:44:55] 2025-11-21 17:40:50,936 | INFO     | mean y: 2300060.1024930747
[2025-11-21 18:44:55] 2025-11-21 17:40:50,936 | INFO     | intersect: -5248833348.969531
[2025-11-21 18:44:55] 2025-11-21 17:40:50,937 | INFO     | chi2: 0.06218929990239883
[2025-11-21 18:44:55] 2025-11-21 17:40:50,937 | INFO     | current memory leak: 2.98 B/s (using 1083 data points, chi2=0.06)
[2025-11-21 18:44:55] 2025-11-21 17:40:50,939 | INFO     | could have reported an average CPU frequency of 2690 MHz (41 samples)
[2025-11-21 18:44:55] 2025-11-21 17:40:50,939 | INFO     | ..............................
[2025-11-21 18:44:55] 2025-11-21 17:40:50,939 | INFO     | . Timing measurements:
[2025-11-21 18:44:55] 2025-11-21 17:40:50,939 | INFO     | . get job = 0 s
[2025-11-21 18:44:55] 2025-11-21 17:40:50,939 | INFO     | . initial setup = 1 s
[2025-11-21 18:44:55] 2025-11-21 17:40:50,939 | INFO     | . payload setup = 6 s
[2025-11-21 18:44:55] 2025-11-21 17:40:50,939 | INFO     | . stage-in = 0 s
[2025-11-21 18:44:55] 2025-11-21 17:40:50,940 | INFO     | . payload execution = 67948 s
[2025-11-21 18:44:55] 2025-11-21 17:40:50,940 | INFO     | . stage-out = 2 s
[2025-11-21 18:44:55] 2025-11-21 17:40:50,940 | INFO     | . log creation = 0 s
[2025-11-21 18:44:55] 2025-11-21 17:40:50,940 | INFO     | ..............................
[2025-11-21 18:44:55] 2025-11-21 17:40:50,969 | INFO     | time since job start (67983s) is within the limit (172800.0s)
[2025-11-21 18:44:55] 2025-11-21 17:40:51,511 | INFO     | 
[2025-11-21 18:44:55] 2025-11-21 17:40:51,511 | INFO     | job summary report
[2025-11-21 18:44:55] 2025-11-21 17:40:51,511 | INFO     | --------------------------------------------------
[2025-11-21 18:44:55] 2025-11-21 17:40:51,511 | INFO     | PanDA job id: 6892526575
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | task id: 47493029
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | errors: (none)
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | pilot state: finished 
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | transexitcode: 0
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | exeerrorcode: 0
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | exeerrordiag: 
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | exitcode: 0
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | exitmsg: OK
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | cpuconsumptiontime: 252997 s
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | nevents: 1000
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | neventsw: 0
[2025-11-21 18:44:55] 2025-11-21 17:40:51,512 | INFO     | pid: 1731896
[2025-11-21 18:44:55] 2025-11-21 17:40:51,513 | INFO     | pgrp: 1731896
[2025-11-21 18:44:55] 2025-11-21 17:40:51,513 | INFO     | corecount: 4
[2025-11-21 18:44:55] 2025-11-21 17:40:51,513 | INFO     | event service: False
[2025-11-21 18:44:55] 2025-11-21 17:40:51,513 | INFO     | sizes: {0: 2298807, 4: 2299069, 11: 2299097, 67958: 2357255, 67960: 2366271, 67963: 2366327, 67968: 2366797}
[2025-11-21 18:44:55] 2025-11-21 17:40:51,513 | INFO     | --------------------------------------------------
[2025-11-21 18:44:55] 2025-11-21 17:40:51,513 | INFO     | 
[2025-11-21 18:44:55] 2025-11-21 17:40:51,513 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/1
[2025-11-21 18:44:55] 2025-11-21 17:40:51,535 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,535 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,535 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,535 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,535 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,536 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,537 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,537 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 18:44:55] 2025-11-21 17:40:51,537 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,537 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 18:44:55] 2025-11-21 17:40:51,537 | INFO     | job 6892526575 has completed (purged errors)
[2025-11-21 18:44:55] 2025-11-21 17:40:51,537 | INFO     | overall cleanup function is called
[2025-11-21 18:44:55] 2025-11-21 17:40:52,550 | INFO     | --- collectZombieJob: --- 10, [1731896]
[2025-11-21 18:44:55] 2025-11-21 17:40:52,550 | INFO     | zombie collector waiting for pid 1731896
[2025-11-21 18:44:55] 2025-11-21 17:40:52,550 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 18:44:55] 2025-11-21 17:40:52,550 | INFO     | collected zombie processes
[2025-11-21 18:44:55] 2025-11-21 17:40:52,550 | INFO     | will attempt to kill all subprocesses of pid=1731896
[2025-11-21 18:44:55] 2025-11-21 17:40:52,952 | INFO     | process IDs to be killed: [1731896] (in reverse order)
[2025-11-21 18:44:55] 2025-11-21 17:40:53,075 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 18:44:55] 2025-11-21 17:40:53,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 18:44:55] 2025-11-21 17:40:53,089 | INFO     | did not find any defunct processes belonging to 1731896
[2025-11-21 18:44:55] 2025-11-21 17:40:53,102 | INFO     | did not find any defunct processes belonging to 1731896
[2025-11-21 18:44:55] 2025-11-21 17:40:53,104 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 18:44:55] 2025-11-21 17:40:53,104 | INFO     | ready for new job
[2025-11-21 18:44:55] 2025-11-21 17:40:53,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 18:44:55] 2025-11-21 17:40:53,110 | INFO     | ***************************************
[2025-11-21 18:44:55] 2025-11-21 17:40:53,110 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 18:44:55] 2025-11-21 17:40:53,110 | INFO     | ***************************************
[2025-11-21 18:44:55] 2025-11-21 17:40:53,110 | INFO     | 
[2025-11-21 18:44:55] 2025-11-21 17:40:53,114 | INFO     | architecture information:
[2025-11-21 18:44:55] 2025-11-21 17:40:53,115 | INFO     | executing command: cat /etc/os-release
[2025-11-21 18:44:55] 2025-11-21 17:40:53,132 | INFO     | cat /etc/os-release:
[2025-11-21 18:44:55] NAME="CentOS Linux"
[2025-11-21 18:44:55] VERSION="7 (Core)"
[2025-11-21 18:44:55] ID="centos"
[2025-11-21 18:44:55] ID_LIKE="rhel fedora"
[2025-11-21 18:44:55] VERSION_ID="7"
[2025-11-21 18:44:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 18:44:55] ANSI_COLOR="0;31"
[2025-11-21 18:44:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 18:44:55] HOME_URL="https://www.centos.org/"
[2025-11-21 18:44:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 18:44:55] 
[2025-11-21 18:44:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 18:44:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 18:44:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 18:44:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 18:44:55] 
[2025-11-21 18:44:55] 2025-11-21 17:40:53,132 | INFO     | ***************************************
[2025-11-21 18:44:55] 2025-11-21 17:40:53,635 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/1
[2025-11-21 18:44:55] 2025-11-21 17:40:53,652 | INFO     | sufficient remaining disk space (663394189312 B)
[2025-11-21 18:44:55] 2025-11-21 17:40:53,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 18:44:55] 2025-11-21 17:40:53,652 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 18:44:55] 2025-11-21 17:40:53,653 | INFO     | update_server=False
[2025-11-21 18:44:55] 2025-11-21 17:40:53,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 18:44:55] 2025-11-21 17:40:53,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:44:55] 2025-11-21 17:40:53,653 | INFO     | aborting loop
[2025-11-21 18:44:55] 2025-11-21 17:40:53,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:44:55] 2025-11-21 17:40:53,936 | INFO     | all payload control threads have been joined
[2025-11-21 18:44:55] 2025-11-21 17:40:54,225 | INFO     | all job control threads have been joined
[2025-11-21 18:44:55] 2025-11-21 17:40:54,492 | INFO     | all data control threads have been joined
[2025-11-21 18:44:55] 2025-11-21 17:40:54,658 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:54,659 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:54,941 | INFO     | [payload] control thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:55,017 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:55,230 | INFO     | [job] control thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:55,277 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:55,386 | INFO     | [job] validate thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:55,497 | INFO     | [data] control thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:55,556 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:55,818 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:56,004 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:56,019 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:56,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:44:55] 2025-11-21 17:40:56,116 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:40:56,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:44:55] 2025-11-21 17:40:57,065 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:41:00,570 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:41:04,298 | INFO     | job.realtimelogging is not enabled
[2025-11-21 18:44:55] 2025-11-21 17:41:05,303 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:44:55] 2025-11-21 17:41:24,555 | INFO     | PID=1724936 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 18:44:55] 2025-11-21 17:41:24,556 | INFO     | .. there are 5 such processes running
[2025-11-21 18:44:55] 2025-11-21 17:41:24,556 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:44:55] 2025-11-21 17:41:24,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:44:55] 2025-11-21 17:41:24,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:44:55] 2025-11-21 17:41:41,925 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:44:55] 2025-11-21 17:41:42,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23121602283328)>', '<ExcThread(monitor, started 23120614258432)>']
[2025-11-21 18:44:55] 2025-11-21 17:41:43,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:44:55] 2025-11-21 17:41:43,654 | INFO     | [monitor] control thread has ended
[2025-11-21 18:44:55] 2025-11-21 17:41:47,930 | INFO     | all workflow threads have been joined
[2025-11-21 18:44:55] 2025-11-21 17:41:47,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:44:55] 2025-11-21 17:41:47,930 | INFO     | traces error code: 0
[2025-11-21 18:44:55] 2025-11-21 17:41:47,931 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:44:55] 2025-11-21 17:41:48,140 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:44:55] 2025-11-21 17:41:48,143 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:44:55] 2025-11-21 17:41:48,145 [wrapper] pilotpid: 1724936
[2025-11-21 18:44:55] 2025-11-21 17:41:48,148 [wrapper] Pilot exit status: 0
[2025-11-21 18:44:55] 2025-11-21 17:41:48,158 [wrapper] pandaids: 6892526575
[2025-11-21 18:44:55] 2025-11-21 17:41:48,239 [wrapper] cleanup supervisor_pilot 2858068 1724937
[2025-11-21 18:44:55] 2025-11-21 17:41:48,242 [wrapper] Test setup, not cleaning
[2025-11-21 18:44:55] 2025-11-21 17:41:48,245 [wrapper] apfmon messages muted
[2025-11-21 18:44:55] 2025-11-21 17:41:48,248 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:44:55] 2025-11-21 17:41:48,250 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:44:55]  *** Error codes and diagnostics ***
[2025-11-21 18:44:55]     "exeErrorCode": 0,
[2025-11-21 18:44:55]     "exeErrorDiag": "",
[2025-11-21 18:44:55]     "pilotErrorCode": 0,
[2025-11-21 18:44:55]     "pilotErrorDiag": "",
[2025-11-21 18:44:55]  *** Listing of results directory ***
[2025-11-21 18:44:55] total 1318260
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-21 18:44:55] -rwx------ 1 boinc boinc     36292 Nov 19 08:07 runpilot2-wrapper.sh
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:07 queuedata.json
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc       100 Nov 20 22:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:44:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 22:46 run_atlas
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc       105 Nov 20 22:46 job.xml
[2025-11-21 18:44:55] -rw-r--r-- 2 boinc boinc 411767043 Nov 20 23:47 EVNT.47493027._000109.pool.root.1
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc      6633 Nov 20 23:47 init_data.xml
[2025-11-21 18:44:55] -rw-r--r-- 2 boinc boinc     15120 Nov 20 23:47 start_atlas.sh
[2025-11-21 18:44:55] drwxrwx--x 2 boinc boinc      4096 Nov 20 23:47 shared
[2025-11-21 18:44:55] -rw-r--r-- 2 boinc boinc    590097 Nov 20 23:47 input.tar.gz
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:47 boinc_lockfile
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc      2773 Nov 20 23:47 pandaJob.out
[2025-11-21 18:44:55] -rw------- 1 boinc boinc    989825 Nov 20 23:47 agis_schedconf.cvmfs.json
[2025-11-21 18:44:55] drwx------ 5 boinc boinc      4096 Nov 20 23:47 pilot3
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc       531 Nov 21 18:32 boinc_task_state.xml
[2025-11-21 18:44:55] -rw------- 1 boinc boinc 911703614 Nov 21 18:40 HITS.47493029._001048.pool.root.1
[2025-11-21 18:44:55] -rw------- 1 boinc boinc        95 Nov 21 18:40 pilot_heartbeat.json
[2025-11-21 18:44:55] -rw------- 1 boinc boinc      1050 Nov 21 18:40 memory_monitor_summary.json
[2025-11-21 18:44:55] -rw------- 1 boinc boinc   1526164 Nov 21 18:40 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:44:55] -rw------- 1 boinc boinc   1822203 Nov 21 18:40 log.47493029._001048.job.log.tgz.1
[2025-11-21 18:44:55] -rw------- 1 boinc boinc      8638 Nov 21 18:40 heartbeat.json
[2025-11-21 18:44:55] -rw------- 1 boinc boinc      4906 Nov 21 18:41 pilotlog.txt
[2025-11-21 18:44:55] -rw------- 1 boinc boinc   9427881 Nov 21 18:41 log.47493029._001048.job.log.1
[2025-11-21 18:44:55] -rw------- 1 boinc boinc       353 Nov 21 18:41 output.list
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc       620 Nov 21 18:41 runtime_log
[2025-11-21 18:44:55] -rw------- 1 boinc boinc  11274240 Nov 21 18:41 result.tar.gz
[2025-11-21 18:44:55] -rw------- 1 boinc boinc       671 Nov 21 18:41 tmBLDmvSrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzfGKDm9Cg3vn.diag
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc      9070 Nov 21 18:41 runtime_log.err
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc        27 Nov 21 18:44 wrapper_checkpoint.txt
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc      8192 Nov 21 18:44 boinc_mmap_file
[2025-11-21 18:44:55] -rw-r--r-- 1 boinc boinc     21079 Nov 21 18:44 stderr.txt
[2025-11-21 18:44:55] HITS file was successfully produced:
[2025-11-21 18:44:55] -rw------- 1 boinc boinc 911703614 Nov 21 18:40 shared/HITS.pool.root.1
[2025-11-21 18:44:55]  *** Contents of shared directory: ***
[2025-11-21 18:44:55] total 1304072
[2025-11-21 18:44:55] -rw-r--r-- 2 boinc boinc 411767043 Nov 20 23:47 ATLAS.root_0
[2025-11-21 18:44:55] -rw-r--r-- 2 boinc boinc     15120 Nov 20 23:47 start_atlas.sh
[2025-11-21 18:44:55] -rw-r--r-- 2 boinc boinc    590097 Nov 20 23:47 input.tar.gz
[2025-11-21 18:44:55] -rw------- 1 boinc boinc 911703614 Nov 21 18:40 HITS.pool.root.1
[2025-11-21 18:44:55] -rw------- 1 boinc boinc  11274240 Nov 21 18:41 result.tar.gz
18:44:57 (1721131): run_atlas exited; CPU time 255551.394438
18:44:57 (1721131): called boinc_finish(0)

</stderr_txt>
]]>

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