Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:12:32 (3757012): wrapper (7.7.26015): starting
10:12:32 (3757012): wrapper: running run_atlas (--nthreads 9)
[2025-11-19 10:12:32] Arguments: --nthreads 9
[2025-11-19 10:12:32] Threads: 9
[2025-11-19 10:12:32] Checking for CVMFS
[2025-11-19 10:12:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 10:12:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 10:12:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 10:12:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 10:12:35] 2.13.2.0 5239 23822 166748 153048 3 336 33657315 39288832 7735 16776704 0 11435042 99.597 11481863 36485 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 10:12:35] CVMFS is ok
[2025-11-19 10:12:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 10:12:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 10:12:35] Further information can be found at the LHC@home message board.
[2025-11-19 10:12:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 10:12:35] Checking for apptainer binary...
[2025-11-19 10:12:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 10:12:35] Running /usr/bin/apptainer --version
[2025-11-19 10:12:35] apptainer version 1.4.4-1.el9
[2025-11-19 10:12:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 10:12:36] c-210-6.aglt2.org
[2025-11-19 10:12:36] apptainer works
[2025-11-19 10:12:36] Set ATHENA_PROC_NUMBER=9
[2025-11-19 10:12:36] Set ATHENA_CORE_NUMBER=9
[2025-11-19 10:12:36] Starting ATLAS job with PandaID=6892522103
[2025-11-19 10:12:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 12:17:57]  *** The last 200 lines of the pilot log: ***
[2025-11-20 12:17:57] 2025-11-20 17:17:11,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 12:17:57] 2025-11-20 17:17:13,395 | INFO     | time since job start (93801s) is within the limit (172800.0s)
[2025-11-20 12:17:57] 2025-11-20 17:17:14,328 | INFO     | monitor loop #5994: job 0:6892522103 is in state 'finished'
[2025-11-20 12:17:57] 2025-11-20 17:17:14,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 12:17:57] 2025-11-20 17:17:15,208 | INFO     | PID=3761878 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 12:17:57] 2025-11-20 17:17:15,208 | INFO     | .. there are 8 such processes running
[2025-11-20 12:17:57] 2025-11-20 17:17:16,212 | INFO     | time since job start (93804s) is within the limit (172800.0s)
[2025-11-20 12:17:57] 2025-11-20 17:17:16,837 | INFO     | monitor loop #5995: job 0:6892522103 is in state 'finished'
[2025-11-20 12:17:57] 2025-11-20 17:17:16,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 12:17:57] 2025-11-20 17:17:18,232 | INFO     | time since job start (93806s) is within the limit (172800.0s)
[2025-11-20 12:17:57] 2025-11-20 17:17:19,347 | INFO     | monitor loop #5996: job 0:6892522103 is in state 'finished'
[2025-11-20 12:17:57] 2025-11-20 17:17:19,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 12:17:57] 2025-11-20 17:17:20,239 | INFO     | time since job start (93808s) is within the limit (172800.0s)
[2025-11-20 12:17:57] 2025-11-20 17:17:21,642 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 12:17:57] 2025-11-20 17:17:21,687 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2784000000006
[2025-11-20 12:17:57] 2025-11-20 17:17:21,797 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6892522103/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 12:17:57] 2025-11-20 17:17:21,798 | INFO     | extracted standard info from prmon json
[2025-11-20 12:17:57] 2025-11-20 17:17:21,851 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 12:17:57] 2025-11-20 17:17:21,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 12:17:57] 2025-11-20 17:17:21,917 | INFO     | fitting pss+swap vs Time
[2025-11-20 12:17:57] 2025-11-20 17:17:21,920 | INFO     | sum of square deviations: 1121488737116.8613
[2025-11-20 12:17:57] 2025-11-20 17:17:21,933 | INFO     | monitor loop #5997: job 0:6892522103 is in state 'finished'
[2025-11-20 12:17:57] 2025-11-20 17:17:21,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 12:17:57] 2025-11-20 17:17:22,199 | INFO     | sum of deviations: 7092045495796.366
[2025-11-20 12:17:57] 2025-11-20 17:17:22,199 | INFO     | mean x: 1763612156.6710098
[2025-11-20 12:17:57] 2025-11-20 17:17:22,199 | INFO     | mean y: 3084170.0918566776
[2025-11-20 12:17:57] 2025-11-20 17:17:22,199 | INFO     | intersect: -11149607103.656559
[2025-11-20 12:17:57] 2025-11-20 17:17:22,201 | INFO     | chi2: 18.16270682370937
[2025-11-20 12:17:57] 2025-11-20 17:17:22,257 | INFO     | sum of square deviations: 1110566070166.2878
[2025-11-20 12:17:57] 2025-11-20 17:17:22,306 | INFO     | time since job start (93810s) is within the limit (172800.0s)
[2025-11-20 12:17:57] 2025-11-20 17:17:23,091 | INFO     | sum of deviations: 7635144175459.8125
[2025-11-20 12:17:57] 2025-11-20 17:17:23,091 | INFO     | mean x: 1763612004.1784313
[2025-11-20 12:17:57] 2025-11-20 17:17:23,091 | INFO     | mean y: 3091751.2790849674
[2025-11-20 12:17:57] 2025-11-20 17:17:23,091 | INFO     | intersect: -12121744657.110146
[2025-11-20 12:17:57] 2025-11-20 17:17:23,141 | INFO     | chi2: 15.040334763109634
[2025-11-20 12:17:57] 2025-11-20 17:17:23,141 | INFO     | current chi2=15.040334763109634 (change=17.19111634023532 %)
[2025-11-20 12:17:57] 2025-11-20 17:17:23,141 | INFO     | right removable region: 1529
[2025-11-20 12:17:57] 2025-11-20 17:17:23,193 | INFO     | sum of square deviations: 1110563756183.572
[2025-11-20 12:17:57] 2025-11-20 17:17:23,770 | INFO     | sum of deviations: 6447599993096.972
[2025-11-20 12:17:57] 2025-11-20 17:17:23,771 | INFO     | mean x: 1763612309.1797385
[2025-11-20 12:17:57] 2025-11-20 17:17:23,771 | INFO     | mean y: 3093165.4437908498
[2025-11-20 12:17:57] 2025-11-20 17:17:23,771 | INFO     | intersect: -10235910808.15016
[2025-11-20 12:17:57] 2025-11-20 17:17:23,824 | INFO     | chi2: 14.214560959975964
[2025-11-20 12:17:57] 2025-11-20 17:17:23,825 | INFO     | current chi2=14.214560959975964 (change=21.737651232576997 %)
[2025-11-20 12:17:57] 2025-11-20 17:17:23,825 | INFO     | left removable region: 10
[2025-11-20 12:17:57] 2025-11-20 17:17:23,878 | INFO     | sum of square deviations: 1086781783682.3025
[2025-11-20 12:17:57] 2025-11-20 17:17:24,101 | INFO     | sum of deviations: 6541194140865.46
[2025-11-20 12:17:57] 2025-11-20 17:17:24,101 | INFO     | mean x: 1763612278.6978276
[2025-11-20 12:17:57] 2025-11-20 17:17:24,101 | INFO     | mean y: 3110650.4127715603
[2025-11-20 12:17:57] 2025-11-20 17:17:24,101 | INFO     | intersect: -10611835677.716846
[2025-11-20 12:17:57] 2025-11-20 17:17:24,105 | INFO     | chi2: 7.273876188052113
[2025-11-20 12:17:57] 2025-11-20 17:17:24,106 | INFO     | current memory leak: 6.02 B/s (using 1519 data points, chi2=7.27)
[2025-11-20 12:17:57] 2025-11-20 17:17:24,107 | INFO     | could have reported an average CPU frequency of 2597 MHz (54 samples)
[2025-11-20 12:17:57] 2025-11-20 17:17:24,107 | INFO     | ..............................
[2025-11-20 12:17:57] 2025-11-20 17:17:24,107 | INFO     | . Timing measurements:
[2025-11-20 12:17:57] 2025-11-20 17:17:24,107 | INFO     | . get job = 0 s
[2025-11-20 12:17:57] 2025-11-20 17:17:24,108 | INFO     | . initial setup = 4 s
[2025-11-20 12:17:57] 2025-11-20 17:17:24,108 | INFO     | . payload setup = 39 s
[2025-11-20 12:17:57] 2025-11-20 17:17:24,108 | INFO     | . stage-in = 0 s
[2025-11-20 12:17:57] 2025-11-20 17:17:24,108 | INFO     | . payload execution = 93652 s
[2025-11-20 12:17:57] 2025-11-20 17:17:24,108 | INFO     | . stage-out = 8 s
[2025-11-20 12:17:57] 2025-11-20 17:17:24,108 | INFO     | . log creation = 2 s
[2025-11-20 12:17:57] 2025-11-20 17:17:24,108 | INFO     | ..............................
[2025-11-20 12:17:57] 2025-11-20 17:17:24,214 | INFO     | 
[2025-11-20 12:17:57] 2025-11-20 17:17:24,214 | INFO     | job summary report
[2025-11-20 12:17:57] 2025-11-20 17:17:24,214 | INFO     | --------------------------------------------------
[2025-11-20 12:17:57] 2025-11-20 17:17:24,214 | INFO     | PanDA job id: 6892522103
[2025-11-20 12:17:57] 2025-11-20 17:17:24,214 | INFO     | task id: 47493029
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | errors: (none)
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | pilot state: finished 
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | transexitcode: 0
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | exeerrorcode: 0
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | exeerrordiag: 
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | exitcode: 0
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | exitmsg: OK
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | cpuconsumptiontime: 301306 s
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | nevents: 1000
[2025-11-20 12:17:57] 2025-11-20 17:17:24,215 | INFO     | neventsw: 0
[2025-11-20 12:17:57] 2025-11-20 17:17:24,216 | INFO     | pid: 3769112
[2025-11-20 12:17:57] 2025-11-20 17:17:24,216 | INFO     | pgrp: 3769112
[2025-11-20 12:17:57] 2025-11-20 17:17:24,216 | INFO     | corecount: 9
[2025-11-20 12:17:57] 2025-11-20 17:17:24,216 | INFO     | event service: False
[2025-11-20 12:17:57] 2025-11-20 17:17:24,216 | INFO     | sizes: {0: 2297025, 1: 2297053, 2: 2297224, 12: 2297252, 23: 2297280, 28: 2297570, 34: 2297726, 93696: 2367346, 93705: 2377936, 93708: 2377992, 93748: 2378238}
[2025-11-20 12:17:57] 2025-11-20 17:17:24,216 | INFO     | --------------------------------------------------
[2025-11-20 12:17:57] 2025-11-20 17:17:24,216 | INFO     | 
[2025-11-20 12:17:57] 2025-11-20 17:17:24,216 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-20 12:17:57] 2025-11-20 17:17:24,335 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,335 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,335 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,336 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,336 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,336 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,349 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,349 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,349 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,349 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,349 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,350 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,350 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,350 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,350 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,350 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,350 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,350 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 12:17:57] 2025-11-20 17:17:24,350 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,350 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 12:17:57] 2025-11-20 17:17:24,351 | INFO     | job 6892522103 has completed (purged errors)
[2025-11-20 12:17:57] 2025-11-20 17:17:24,351 | INFO     | overall cleanup function is called
[2025-11-20 12:17:57] 2025-11-20 17:17:25,411 | INFO     | --- collectZombieJob: --- 10, [3769112]
[2025-11-20 12:17:57] 2025-11-20 17:17:25,411 | INFO     | zombie collector waiting for pid 3769112
[2025-11-20 12:17:57] 2025-11-20 17:17:25,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 12:17:57] 2025-11-20 17:17:25,411 | INFO     | collected zombie processes
[2025-11-20 12:17:57] 2025-11-20 17:17:25,412 | INFO     | will attempt to kill all subprocesses of pid=3769112
[2025-11-20 12:17:57] 2025-11-20 17:17:26,097 | INFO     | process IDs to be killed: [3769112] (in reverse order)
[2025-11-20 12:17:57] 2025-11-20 17:17:26,345 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 12:17:57] 2025-11-20 17:17:26,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 12:17:57] 2025-11-20 17:17:26,371 | INFO     | did not find any defunct processes belonging to 3769112
[2025-11-20 12:17:57] 2025-11-20 17:17:26,394 | INFO     | did not find any defunct processes belonging to 3769112
[2025-11-20 12:17:57] 2025-11-20 17:17:26,404 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 12:17:57] 2025-11-20 17:17:26,405 | INFO     | ready for new job
[2025-11-20 12:17:57] 2025-11-20 17:17:26,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 12:17:57] 2025-11-20 17:17:26,412 | INFO     | ***************************************
[2025-11-20 12:17:57] 2025-11-20 17:17:26,413 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 12:17:57] 2025-11-20 17:17:26,413 | INFO     | ***************************************
[2025-11-20 12:17:57] 2025-11-20 17:17:26,413 | INFO     | 
[2025-11-20 12:17:57] 2025-11-20 17:17:26,415 | INFO     | architecture information:
[2025-11-20 12:17:57] 2025-11-20 17:17:26,418 | INFO     | executing command: cat /etc/os-release
[2025-11-20 12:17:57] 2025-11-20 17:17:26,469 | INFO     | cat /etc/os-release:
[2025-11-20 12:17:57] NAME="CentOS Linux"
[2025-11-20 12:17:57] VERSION="7 (Core)"
[2025-11-20 12:17:57] ID="centos"
[2025-11-20 12:17:57] ID_LIKE="rhel fedora"
[2025-11-20 12:17:57] VERSION_ID="7"
[2025-11-20 12:17:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 12:17:57] ANSI_COLOR="0;31"
[2025-11-20 12:17:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 12:17:57] HOME_URL="https://www.centos.org/"
[2025-11-20 12:17:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 12:17:57] 
[2025-11-20 12:17:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 12:17:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 12:17:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 12:17:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 12:17:57] 
[2025-11-20 12:17:57] 2025-11-20 17:17:26,470 | INFO     | ***************************************
[2025-11-20 12:17:57] 2025-11-20 17:17:26,973 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-20 12:17:57] 2025-11-20 17:17:27,207 | INFO     | sufficient remaining disk space (49866080256 B)
[2025-11-20 12:17:57] 2025-11-20 17:17:27,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 12:17:57] 2025-11-20 17:17:27,207 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 12:17:57] 2025-11-20 17:17:27,208 | INFO     | update_server=False
[2025-11-20 12:17:57] 2025-11-20 17:17:27,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 12:17:57] 2025-11-20 17:17:27,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 12:17:57] 2025-11-20 17:17:27,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 12:17:57] 2025-11-20 17:17:28,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 12:17:57] 2025-11-20 17:17:28,084 | INFO     | aborting loop
[2025-11-20 12:17:57] 2025-11-20 17:17:28,216 | INFO     | [job] retrieve thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:28,237 | INFO     | all data control threads have been joined
[2025-11-20 12:17:57] 2025-11-20 17:17:28,280 | INFO     | [payload] failed_post thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:28,358 | INFO     | all job control threads have been joined
[2025-11-20 12:17:57] 2025-11-20 17:17:28,401 | INFO     | [payload] validate_post thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:28,566 | INFO     | all payload control threads have been joined
[2025-11-20 12:17:57] 2025-11-20 17:17:28,728 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,078 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,079 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,091 | INFO     | [job] job monitor thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 12:17:57] 2025-11-20 17:17:29,241 | INFO     | [data] copytool_in thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,243 | INFO     | [data] control thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,346 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,364 | INFO     | [job] control thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,504 | INFO     | [data] copytool_out thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,572 | INFO     | [payload] control thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:29,706 | INFO     | [job] validate thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:30,240 | INFO     | [job] queue monitor thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:31,218 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 12:17:57] 2025-11-20 17:17:40,223 | INFO     | [monitor] cgroup control has ended
[2025-11-20 12:17:57] 2025-11-20 17:17:40,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349853570880)>', '<ExcThread(monitor, started 140349481654016)>']
[2025-11-20 12:17:57] 2025-11-20 17:17:45,516 | INFO     | all workflow threads have been joined
[2025-11-20 12:17:57] 2025-11-20 17:17:45,516 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 12:17:57] 2025-11-20 17:17:45,518 | INFO     | traces error code: 0
[2025-11-20 12:17:57] 2025-11-20 17:17:45,518 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 12:17:57] 2025-11-20 17:17:54,522 | INFO     | 93816s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 12:17:57] 2025-11-20 17:17:56,042 | INFO     | PID=3761878 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 12:17:57] 2025-11-20 17:17:56,043 | INFO     | .. there are 8 such processes running
[2025-11-20 12:17:57] 2025-11-20 17:17:56,043 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 12:17:57] 2025-11-20 17:17:56,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 12:17:57] 2025-11-20 17:17:56,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 12:17:57] 2025-11-20 17:17:56,043 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 12:17:57] 2025-11-20 17:17:56,043 | INFO     | [monitor] control thread has ended
[2025-11-20 12:17:57] 2025-11-20 17:17:56,287 [wrapper] ==== pilot stdout END ====
[2025-11-20 12:17:57] 2025-11-20 17:17:56,359 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 12:17:57] 2025-11-20 17:17:56,424 [wrapper] pilotpid: 3761878
[2025-11-20 12:17:57] 2025-11-20 17:17:56,488 [wrapper] Pilot exit status: 0
[2025-11-20 12:17:57] 2025-11-20 17:17:56,687 [wrapper] pandaids: 6892522103
[2025-11-20 12:17:57] 2025-11-20 17:17:57,304 [wrapper] cleanup supervisor_pilot 1748907 3761879
[2025-11-20 12:17:57] 2025-11-20 17:17:57,323 [wrapper] Test setup, not cleaning
[2025-11-20 12:17:57] 2025-11-20 17:17:57,360 [wrapper] apfmon messages muted
[2025-11-20 12:17:57] 2025-11-20 17:17:57,387 [wrapper] ==== wrapper stdout END ====
[2025-11-20 12:17:57] 2025-11-20 17:17:57,411 [wrapper] ==== wrapper stderr END ====
[2025-11-20 12:17:57]  *** Error codes and diagnostics ***
[2025-11-20 12:17:57]     "exeErrorCode": 0,
[2025-11-20 12:17:57]     "exeErrorDiag": "",
[2025-11-20 12:17:57]     "pilotErrorCode": 0,
[2025-11-20 12:17:57]     "pilotErrorDiag": "",
[2025-11-20 12:17:57]  *** Listing of results directory ***
[2025-11-20 12:17:58] total 1325816
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:03 queuedata.json
[2025-11-20 12:17:58] -rwx------. 1 boincer umatlas     36292 Nov 19 02:04 runpilot2-wrapper.sh
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas       100 Nov 19 10:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 12:17:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 10:12 run_atlas
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas       105 Nov 19 10:12 job.xml
[2025-11-20 12:17:58] -rw-r--r--. 2 boincer umatlas 408419157 Nov 19 10:12 EVNT.47493027._000020.pool.root.1
[2025-11-20 12:17:58] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 10:12 start_atlas.sh
[2025-11-20 12:17:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 10:12 shared
[2025-11-20 12:17:58] -rw-r--r--. 2 boincer umatlas    590093 Nov 19 10:12 input.tar.gz
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas         0 Nov 19 10:12 boinc_lockfile
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas      2771 Nov 19 10:12 pandaJob.out
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas    989442 Nov 19 10:13 agis_schedconf.cvmfs.json
[2025-11-20 12:17:58] drwx------. 5 boincer umatlas      4096 Nov 19 10:13 pilot3
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas       533 Nov 20 11:56 boinc_task_state.xml
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas      6661 Nov 20 12:10 init_data.xml
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas 915250779 Nov 20 12:15 HITS.47493029._000159.pool.root.1
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas      1057 Nov 20 12:16 memory_monitor_summary.json
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas   1526164 Nov 20 12:16 agis_ddmendpoints.agis.ALL.json
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas   2697733 Nov 20 12:16 log.47493029._000159.job.log.tgz.1
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas        95 Nov 20 12:17 pilot_heartbeat.json
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas      8630 Nov 20 12:17 heartbeat.json
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 12:17 boinc_mmap_file
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas        29 Nov 20 12:17 wrapper_checkpoint.txt
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas       938 Nov 20 12:17 pilotlog.txt
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas  12326866 Nov 20 12:17 log.47493029._000159.job.log.1
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas       353 Nov 20 12:17 output.list
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas       620 Nov 20 12:17 runtime_log
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas  15042560 Nov 20 12:17 result.tar.gz
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas      8699 Nov 20 12:17 runtime_log.err
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas       660 Nov 20 12:17 hW1KDm7Prf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmaGKDm2YRyPm.diag
[2025-11-20 12:17:58] -rw-r--r--. 1 boincer umatlas     21911 Nov 20 12:17 stderr.txt
[2025-11-20 12:17:58] HITS file was successfully produced:
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas 915250779 Nov 20 12:15 shared/HITS.pool.root.1
[2025-11-20 12:17:58]  *** Contents of shared directory: ***
[2025-11-20 12:17:58] total 1307944
[2025-11-20 12:17:58] -rw-r--r--. 2 boincer umatlas 408419157 Nov 19 10:12 ATLAS.root_0
[2025-11-20 12:17:58] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 10:12 start_atlas.sh
[2025-11-20 12:17:58] -rw-r--r--. 2 boincer umatlas    590093 Nov 19 10:12 input.tar.gz
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas 915250779 Nov 20 12:15 HITS.pool.root.1
[2025-11-20 12:17:58] -rw-------. 1 boincer umatlas  15042560 Nov 20 12:17 result.tar.gz
12:18:19 (3757012): run_atlas exited; CPU time 302531.519561
12:18:19 (3757012): called boinc_finish(0)

</stderr_txt>
]]>

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