Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:05:37 (1823596): wrapper (7.7.26015): starting
02:05:37 (1823596): wrapper: running run_atlas (--nthreads 12)
[2025-11-19 02:05:37] Arguments: --nthreads 12
[2025-11-19 02:05:37] Threads: 12
[2025-11-19 02:05:37] Checking for CVMFS
[2025-11-19 02:05:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 02:05:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 02:05:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 02:05:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 02:05:38] 2.11.5.0 201091 18068 271560 153039 3 92 22818052 45568000 7907 130560 0 176250002 99.766 134852384 27406 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-19 02:05:38] CVMFS is ok
[2025-11-19 02:05:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 02:05:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 02:05:38] Further information can be found at the LHC@home message board.
[2025-11-19 02:05:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 02:05:38] Checking for apptainer binary...
[2025-11-19 02:05:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 02:05:38] Running /usr/bin/apptainer --version
[2025-11-19 02:05:38] apptainer version 1.4.1-1.el9
[2025-11-19 02:05:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 02:05:38] wns0040.triumf.lcg
[2025-11-19 02:05:38] apptainer works
[2025-11-19 02:05:38] Set ATHENA_PROC_NUMBER=12
[2025-11-19 02:05:38] Set ATHENA_CORE_NUMBER=12
[2025-11-19 02:05:38] Starting ATLAS job with PandaID=6892546226
[2025-11-19 02:05:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 02:09:52]  *** The last 200 lines of the pilot log: ***
[2025-11-19 02:09:52] 2025-11-19 10:08:56,133 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 02:09:52] 2025-11-19 10:08:56,133 | WARNING  | wrong length of table data, x=[1763546769.0], y=[1210.0] (must be same and length>=4)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | could have reported an average CPU frequency of 2785 MHz (4 samples)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | ..............................
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . Timing measurements:
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . get job = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . initial setup = 2 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . payload setup = 4 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . stage-in = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . payload execution = 43 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . stage-out = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . log creation = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | ..............................
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 02:09:52] 2025-11-19 10:08:56,135 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892546226/pilotlog.txt
[2025-11-19 02:09:52] 2025-11-19 10:08:56,143 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-19 02:09:52] - Log from pilotlog.txt -
[2025-11-19 02:09:52] 2025-11-19 10:08:56,132 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892546226/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,132 | INFO     | extracted standard info from prmon json
[2025-11-19 02:09:52] 2025-11-19 10:08:56,132 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 02:09:52] 2025-11-19 10:08:56,132 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 02:09:52] 2025-11-19 10:08:56,133 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 02:09:52] 2025-11-19 10:08:56,133 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 02:09:52] 2025-11-19 10:08:56,133 | WARNING  | wrong length of table data, x=[1763546769.0], y=[1210.0] (must be same and length>=4)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | could have reported an average CPU frequency of 2785 MHz (4 samples)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | ..............................
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . Timing measurements:
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . get job = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . initial setup = 2 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . payload setup = 4 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . stage-in = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . payload execution = 43 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . stage-out = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . log creation = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | ..............................
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 02:09:52] 2025-11-19 10:08:56,135 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892546226/pilotlog.txt
[2025-11-19 02:09:52] 2025-11-19 10:08:56,144 | WARNING  | 
[2025-11-19 02:09:52] [begin log extracts]
[2025-11-19 02:09:52] - Log from pilotlog.txt -
[2025-11-19 02:09:52] 2025-11-19 10:08:56,132 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892546226/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,132 | INFO     | extracted standard info from prmon json
[2025-11-19 02:09:52] 2025-11-19 10:08:56,132 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 02:09:52] 2025-11-19 10:08:56,132 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 02:09:52] 2025-11-19 10:08:56,133 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 02:09:52] 2025-11-19 10:08:56,133 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 02:09:52] 2025-11-19 10:08:56,133 | WARNING  | wrong length of table data, x=[1763546769.0], y=[1210.0] (must be same and length>=4)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | could have reported an average CPU frequency of 2785 MHz (4 samples)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | ..............................
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . Timing measurements:
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . get job = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . initial setup = 2 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . payload setup = 4 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . stage-in = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . payload execution = 43 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . stage-out = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | . log creation = 0 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | ..............................
[2025-11-19 02:09:52] 2025-11-19 10:08:56,134 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 02:09:52] 2025-11-19 10:08:56,135 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892546226/pilotlog.txt
[2025-11-19 02:09:52] [end log extracts]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,144 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,145 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | 
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | job summary report
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | --------------------------------------------------
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | PanDA job id: 6892546226
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | task id: 47493029
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-19 02:06:44,781 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | pilot state: failed 
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | transexitcode: 65
[2025-11-19 02:09:52] 2025-11-19 10:08:56,199 | INFO     | exeerrorcode: 65
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | exitcode: 65
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | cpuconsumptiontime: 37 s
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | nevents: 0
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | neventsw: 0
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | pid: 1835010
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | pgrp: 1835010
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | corecount: 12
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | event service: False
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | sizes: {0: 2297197, 3: 2297459, 10: 2297487, 51: 2322993, 52: 2327283, 55: 2327311, 175: 2327665}
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | --------------------------------------------------
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | 
[2025-11-19 02:09:52] 2025-11-19 10:08:56,200 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-19 02:09:52] 2025-11-19 10:08:56,214 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,216 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,216 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,216 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,216 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 02:09:52] 2025-11-19 10:08:56,216 | INFO     | job 6892546226 has completed (purged errors)
[2025-11-19 02:09:52] 2025-11-19 10:08:56,216 | INFO     | overall cleanup function is called
[2025-11-19 02:09:52] 2025-11-19 10:08:57,223 | INFO     | --- collectZombieJob: --- 10, [1835010]
[2025-11-19 02:09:52] 2025-11-19 10:08:57,223 | INFO     | zombie collector waiting for pid 1835010
[2025-11-19 02:09:52] 2025-11-19 10:08:57,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 02:09:52] 2025-11-19 10:08:57,223 | INFO     | collected zombie processes
[2025-11-19 02:09:52] 2025-11-19 10:08:57,223 | INFO     | will attempt to kill all subprocesses of pid=1835010
[2025-11-19 02:09:52] 2025-11-19 10:08:57,360 | INFO     | process IDs to be killed: [1835010] (in reverse order)
[2025-11-19 02:09:52] 2025-11-19 10:08:57,414 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 02:09:52] 2025-11-19 10:08:57,414 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 02:09:52] 2025-11-19 10:08:57,420 | INFO     | did not find any defunct processes belonging to 1835010
[2025-11-19 02:09:52] 2025-11-19 10:08:57,424 | INFO     | did not find any defunct processes belonging to 1835010
[2025-11-19 02:09:52] 2025-11-19 10:08:57,425 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 02:09:52] 2025-11-19 10:08:57,425 | INFO     | ready for new job
[2025-11-19 02:09:52] 2025-11-19 10:08:57,426 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 02:09:52] 2025-11-19 10:08:57,427 | INFO     | ***************************************
[2025-11-19 02:09:52] 2025-11-19 10:08:57,427 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 02:09:52] 2025-11-19 10:08:57,427 | INFO     | ***************************************
[2025-11-19 02:09:52] 2025-11-19 10:08:57,427 | INFO     | 
[2025-11-19 02:09:52] 2025-11-19 10:08:57,429 | INFO     | architecture information:
[2025-11-19 02:09:52] 2025-11-19 10:08:57,429 | INFO     | executing command: cat /etc/os-release
[2025-11-19 02:09:52] 2025-11-19 10:08:57,439 | INFO     | cat /etc/os-release:
[2025-11-19 02:09:52] NAME="CentOS Linux"
[2025-11-19 02:09:52] VERSION="7 (Core)"
[2025-11-19 02:09:52] ID="centos"
[2025-11-19 02:09:52] ID_LIKE="rhel fedora"
[2025-11-19 02:09:52] VERSION_ID="7"
[2025-11-19 02:09:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 02:09:52] ANSI_COLOR="0;31"
[2025-11-19 02:09:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 02:09:52] HOME_URL="https://www.centos.org/"
[2025-11-19 02:09:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 02:09:52] 
[2025-11-19 02:09:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 02:09:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 02:09:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 02:09:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 02:09:52] 
[2025-11-19 02:09:52] 2025-11-19 10:08:57,440 | INFO     | ***************************************
[2025-11-19 02:09:52] 2025-11-19 10:08:57,943 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-19 02:09:52] 2025-11-19 10:08:57,954 | INFO     | sufficient remaining disk space (2083646341120 B)
[2025-11-19 02:09:52] 2025-11-19 10:08:57,954 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 02:09:52] 2025-11-19 10:08:57,954 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 02:09:52] 2025-11-19 10:08:57,954 | INFO     | update_server=False
[2025-11-19 02:09:52] 2025-11-19 10:08:57,954 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 02:09:52] 2025-11-19 10:08:57,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 02:09:52] 2025-11-19 10:08:58,107 | INFO     | all data control threads have been joined
[2025-11-19 02:09:52] 2025-11-19 10:08:58,337 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 02:09:52] 2025-11-19 10:08:58,337 | INFO     | aborting loop
[2025-11-19 02:09:52] 2025-11-19 10:08:58,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 02:09:52] 2025-11-19 10:08:58,701 | INFO     | all payload control threads have been joined
[2025-11-19 02:09:52] 2025-11-19 10:08:58,809 | INFO     | all job control threads have been joined
[2025-11-19 02:09:52] 2025-11-19 10:08:58,960 | INFO     | [job] retrieve thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:08:58,960 | INFO     | [job] queue monitor thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:08:58,985 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:08:59,112 | INFO     | [data] control thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:08:59,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 02:09:52] 2025-11-19 10:08:59,297 | INFO     | [payload] validate_post thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:08:59,342 | INFO     | [job] job monitor thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:08:59,706 | INFO     | [payload] control thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:08:59,815 | INFO     | [job] control thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:08:59,888 | INFO     | [payload] failed_post thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:08:59,951 | INFO     | [job] validate thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:09:00,077 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:09:00,164 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:09:00,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:09:00,450 | INFO     | [data] copytool_in thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:09:00,454 | INFO     | [data] copytool_out thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:09:03,120 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 02:09:52] 2025-11-19 10:09:28,420 | INFO     | PID=1827302 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 02:09:52] 2025-11-19 10:09:28,420 | INFO     | .. there are 17 such processes running
[2025-11-19 02:09:52] 2025-11-19 10:09:28,420 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 02:09:52] 2025-11-19 10:09:28,420 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 02:09:52] 2025-11-19 10:09:28,420 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 02:09:52] 2025-11-19 10:09:46,328 | INFO     | [monitor] cgroup control has ended
[2025-11-19 02:09:52] 2025-11-19 10:09:47,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140360753862464)>', '<ExcThread(monitor, started 140359866775296)>']
[2025-11-19 02:09:52] 2025-11-19 10:09:47,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 02:09:52] 2025-11-19 10:09:47,503 | INFO     | [monitor] control thread has ended
[2025-11-19 02:09:52] 2025-11-19 10:09:52,073 | INFO     | all workflow threads have been joined
[2025-11-19 02:09:52] 2025-11-19 10:09:52,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 02:09:52] 2025-11-19 10:09:52,073 | INFO     | traces error code: 0
[2025-11-19 02:09:52] 2025-11-19 10:09:52,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 02:09:52] 2025-11-19 10:09:52,176 [wrapper] ==== pilot stdout END ====
[2025-11-19 02:09:52] 2025-11-19 10:09:52,179 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 02:09:52] 2025-11-19 10:09:52,181 [wrapper] pilotpid: 1827302
[2025-11-19 02:09:52] 2025-11-19 10:09:52,183 [wrapper] Pilot exit status: 0
[2025-11-19 02:09:52] 2025-11-19 10:09:52,189 [wrapper] pandaids: 6892546226
[2025-11-19 02:09:52] 2025-11-19 10:09:52,224 [wrapper] cleanup supervisor_pilot 1827308 1827303
[2025-11-19 02:09:52] 2025-11-19 10:09:52,226 [wrapper] Test setup, not cleaning
[2025-11-19 02:09:52] 2025-11-19 10:09:52,228 [wrapper] apfmon messages muted
[2025-11-19 02:09:52] 2025-11-19 10:09:52,230 [wrapper] ==== wrapper stdout END ====
[2025-11-19 02:09:52] 2025-11-19 10:09:52,232 [wrapper] ==== wrapper stderr END ====
[2025-11-19 02:09:52]  *** Error codes and diagnostics ***
[2025-11-19 02:09:52]     "exeErrorCode": 65,
[2025-11-19 02:09:52]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-19 02:09:52]     "pilotErrorCode": 1305,
[2025-11-19 02:09:52]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-19 02:09:52]  *** Listing of results directory ***
[2025-11-19 02:09:52] total 404944
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc    576529 Nov 19 00:16 pilot3.tar.gz
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc      5112 Nov 19 00:17 queuedata.json
[2025-11-19 02:09:52] -rwx------. 1 boinc boinc     36292 Nov 19 00:18 runpilot2-wrapper.sh
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc       100 Nov 19 02:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 02:09:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 02:05 run_atlas
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc       105 Nov 19 02:05 job.xml
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc      6595 Nov 19 02:05 init_data.xml
[2025-11-19 02:09:52] -rw-r--r--. 2 boinc boinc 410461064 Nov 19 02:05 EVNT.47493027._000289.pool.root.1
[2025-11-19 02:09:52] -rw-r--r--. 2 boinc boinc     15120 Nov 19 02:05 start_atlas.sh
[2025-11-19 02:09:52] drwxrwx--x. 2 boinc boinc      4096 Nov 19 02:05 shared
[2025-11-19 02:09:52] -rw-r--r--. 2 boinc boinc    590103 Nov 19 02:05 input.tar.gz
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc         0 Nov 19 02:05 boinc_lockfile
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc      2773 Nov 19 02:05 pandaJob.out
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc    989279 Nov 19 02:05 agis_schedconf.cvmfs.json
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc   1525063 Nov 19 02:05 agis_ddmendpoints.agis.ALL.json
[2025-11-19 02:09:52] drwx------. 5 boinc boinc      4096 Nov 19 02:05 pilot3
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc       523 Nov 19 02:06 boinc_task_state.xml
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc       976 Nov 19 02:06 memory_monitor_summary.json
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc     47328 Nov 19 02:06 log.47493029._002845.job.log.tgz.1
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc        95 Nov 19 02:08 pilot_heartbeat.json
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc     10319 Nov 19 02:08 heartbeat.json
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc        23 Nov 19 02:09 wrapper_checkpoint.txt
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc      8192 Nov 19 02:09 boinc_mmap_file
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc      4823 Nov 19 02:09 pilotlog.txt
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc     92559 Nov 19 02:09 log.47493029._002845.job.log.1
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc       186 Nov 19 02:09 output.list
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc       620 Nov 19 02:09 runtime_log
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc    163840 Nov 19 02:09 result.tar.gz
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc      8528 Nov 19 02:09 runtime_log.err
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc       645 Nov 19 02:09 hZHNDmMZsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmI5FKDm8ogCem.diag
[2025-11-19 02:09:52] -rw-r--r--. 1 boinc boinc     22391 Nov 19 02:09 stderr.txt
[2025-11-19 02:09:52] No HITS result produced
[2025-11-19 02:09:52]  *** Contents of shared directory: ***
[2025-11-19 02:09:52] total 401604
[2025-11-19 02:09:52] -rw-r--r--. 2 boinc boinc 410461064 Nov 19 02:05 ATLAS.root_0
[2025-11-19 02:09:52] -rw-r--r--. 2 boinc boinc     15120 Nov 19 02:05 start_atlas.sh
[2025-11-19 02:09:52] -rw-r--r--. 2 boinc boinc    590103 Nov 19 02:05 input.tar.gz
[2025-11-19 02:09:52] -rw-------. 1 boinc boinc    163840 Nov 19 02:09 result.tar.gz
02:09:53 (1823596): run_atlas exited; CPU time 36.946634
02:09:53 (1823596): called boinc_finish(0)

</stderr_txt>
]]>

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