Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 02:18:25 (2511887): vboxwrapper version 26210
2025-11-26 02:18:25 (2511887): BOINC client version: 7.24.1
2025-11-26 02:18:25 (2511887): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-11-26 02:18:25 (2511887): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 02:18:25 (2511887): Create VM. (boinc_8a984ff454175b38, slot#0)
2025-11-26 02:18:25 (2511887): Setting Memory Size for VM. (4200MB)
2025-11-26 02:18:25 (2511887): Setting CPU Count for VM. (2)
2025-11-26 02:18:26 (2511887): Setting Chipset Options for VM.
2025-11-26 02:18:26 (2511887): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 02:18:26 (2511887): Setting Boot Options for VM.
2025-11-26 02:18:26 (2511887): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 02:18:26 (2511887): Enabling VM Network Access.
2025-11-26 02:18:26 (2511887): Disabling USB Support for VM.
2025-11-26 02:18:26 (2511887): Disabling COM Port Support for VM.
2025-11-26 02:18:26 (2511887): Disabling LPT Port Support for VM.
2025-11-26 02:18:26 (2511887): Disabling Audio Support for VM.
2025-11-26 02:18:26 (2511887): Disabling Clipboard Support for VM.
2025-11-26 02:18:26 (2511887): Disabling Drag and Drop Support for VM.
2025-11-26 02:18:26 (2511887): Adding storage controller(s) to VM.
2025-11-26 02:18:26 (2511887): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 02:18:26 (2511887): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 02:18:27 (2511887): forwarding host port 59403 to guest port 80
2025-11-26 02:18:27 (2511887): Enabling remote desktop for VM.
2025-11-26 02:18:27 (2511887): Required extension pack not installed, remote desktop not enabled.
2025-11-26 02:18:27 (2511887): Enabling shared directory for VM.
2025-11-26 02:18:27 (2511887): Starting VM using VBoxManage interface. (boinc_8a984ff454175b38, slot#0)
2025-11-26 02:18:28 (2511887): Successfully started VM. (PID = '2512363')
2025-11-26 02:18:28 (2511887): Reporting VM Process ID to BOINC.
2025-11-26 02:18:28 (2511887): Guest Log: BIOS: VirtualBox 7.0.16
2025-11-26 02:18:28 (2511887): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 02:18:28 (2511887): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 02:18:28 (2511887): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 02:18:28 (2511887): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 02:18:28 (2511887): Detected: Web Application Enabled (http://localhost:59403)
2025-11-26 02:18:28 (2511887): Preference change detected
2025-11-26 02:18:28 (2511887): Setting CPU throttle for VM. (100%)
2025-11-26 02:18:28 (2511887): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 02:18:30 (2511887): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 02:18:30 (2511887): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 02:18:33 (2511887): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 02:18:33 (2511887): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 02:18:33 (2511887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 02:18:38 (2511887): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 02:18:38 (2511887): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 02:18:50 (2511887): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 02:18:50 (2511887): Guest Log: 00:00:00.000163 main     Log opened 2025-11-26T00:18:48.245694000Z
2025-11-26 02:18:50 (2511887): Guest Log: 00:00:00.000272 main     OS Product: Linux
2025-11-26 02:18:50 (2511887): Guest Log: 00:00:00.000298 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 02:18:50 (2511887): Guest Log: 00:00:00.000315 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 02:18:50 (2511887): Guest Log: 00:00:00.000331 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 02:18:50 (2511887): Guest Log: 00:00:00.000332 main     Process ID: 1238
2025-11-26 02:18:50 (2511887): Guest Log: 00:00:00.000332 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 02:18:50 (2511887): Guest Log: 00:00:00.001307 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 02:18:50 (2511887): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 02:18:50 (2511887): Guest Log: [INFO] Mounting shared directory
2025-11-26 02:18:50 (2511887): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 02:18:54 (2511887): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 02:18:54 (2511887): Guest Log: [INFO] Detected branch: prod
2025-11-26 02:18:55 (2511887): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 02:18:55 (2511887): Guest Log: Copying input files
2025-11-26 02:18:56 (2511887): Guest Log: Copied input files into RunAtlas.
2025-11-26 02:18:57 (2511887): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 02:18:57 (2511887): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 02:18:57 (2511887): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 02:18:57 (2511887): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 02:19:06 (2511887): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 02:19:06 (2511887): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 02:19:06 (2511887): Guest Log: 2.6.3.0 1513 0 32116 153303 4 1 3117639 4096000 0 65024 0 0 n/a 1 1 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 02:19:08 (2511887): Guest Log: copied the webapp to /var/www
2025-11-26 02:19:08 (2511887): Guest Log: ATHENA_PROC_NUMBER=2
2025-11-26 02:19:08 (2511887): Guest Log: ATHENA_CORE_NUMBER=2
2025-11-26 02:19:08 (2511887): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 02:19:08 (2511887): Guest Log:  *** Starting ATLAS job. (PandaID=6891570514 taskID=47493068) ***
2025-11-26 03:57:29 (2511887): Status Report: Elapsed Time: '6000.000000'
2025-11-26 03:57:29 (2511887): Status Report: CPU Time: '10959.530000'
2025-11-26 05:36:29 (2511887): Status Report: Elapsed Time: '12000.000000'
2025-11-26 05:36:29 (2511887): Status Report: CPU Time: '22701.750000'
2025-11-26 07:15:30 (2511887): Status Report: Elapsed Time: '18000.000000'
2025-11-26 07:15:30 (2511887): Status Report: CPU Time: '34474.460000'
2025-11-26 08:54:30 (2511887): Status Report: Elapsed Time: '24000.000000'
2025-11-26 08:54:30 (2511887): Status Report: CPU Time: '46250.800000'
2025-11-26 10:33:31 (2511887): Status Report: Elapsed Time: '30000.000000'
2025-11-26 10:33:31 (2511887): Status Report: CPU Time: '58041.680000'
2025-11-26 12:12:31 (2511887): Status Report: Elapsed Time: '36000.000000'
2025-11-26 12:12:31 (2511887): Status Report: CPU Time: '69833.820000'
2025-11-26 13:51:32 (2511887): Status Report: Elapsed Time: '42000.000000'
2025-11-26 13:51:32 (2511887): Status Report: CPU Time: '81626.270000'
2025-11-26 15:30:33 (2511887): Status Report: Elapsed Time: '48000.000000'
2025-11-26 15:30:33 (2511887): Status Report: CPU Time: '93420.710000'
2025-11-26 17:09:33 (2511887): Status Report: Elapsed Time: '54000.000000'
2025-11-26 17:09:33 (2511887): Status Report: CPU Time: '105213.180000'
2025-11-26 18:48:34 (2511887): Status Report: Elapsed Time: '60000.000000'
2025-11-26 18:48:34 (2511887): Status Report: CPU Time: '116966.900000'
2025-11-26 20:27:34 (2511887): Status Report: Elapsed Time: '66000.000000'
2025-11-26 20:27:34 (2511887): Status Report: CPU Time: '128760.500000'
2025-11-26 22:06:35 (2511887): Status Report: Elapsed Time: '72000.000000'
2025-11-26 22:06:35 (2511887): Status Report: CPU Time: '140521.480000'
2025-11-26 23:45:35 (2511887): Status Report: Elapsed Time: '78000.000000'
2025-11-26 23:45:35 (2511887): Status Report: CPU Time: '152317.040000'
2025-11-27 00:11:56 (2511887): Guest Log:  *** Job finished ***
2025-11-27 00:11:56 (2511887): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:35,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:35,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:49,026 | INFO     | [monitor] cgroup control has ended
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:49,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140659870213952)>', '<ExcThread(monitor, started 140659272955648)>']
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:49,377 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:49,377 | INFO     | [monitor] control thread has ended
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,131 | INFO     | all workflow threads have been joined
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,131 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,132 | INFO     | traces error code: 0
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,132 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,275 [wrapper] ==== pilot stdout END ====
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,286 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,297 [wrapper] pilotpid: 5894
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,309 [wrapper] Pilot exit status: 0
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,352 [wrapper] pandaids: 6891570514
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,413 [wrapper] cleanup supervisor_pilot 25905 5895
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,425 [wrapper] Test setup, not cleaning
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,438 [wrapper] apfmon messages muted
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,452 [wrapper] ==== wrapper stdout END ====
2025-11-27 00:11:56 (2511887): Guest Log: 2025-11-26 22:11:54,466 [wrapper] ==== wrapper stderr END ====
2025-11-27 00:11:56 (2511887): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 00:11:56 (2511887): Guest Log:     "exeErrorCode": 0,
2025-11-27 00:11:56 (2511887): Guest Log:     "exeErrorDiag": "",
2025-11-27 00:11:56 (2511887): Guest Log:     "pilotErrorCode": 0,
2025-11-27 00:11:56 (2511887): Guest Log:     "pilotErrorDiag": "",
2025-11-27 00:11:56 (2511887): Guest Log:  *** Listing of results directory ***
2025-11-27 00:11:56 (2511887): Guest Log: total 930924
2025-11-27 00:11:56 (2511887): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:15 pilot3.tar.gz
2025-11-27 00:11:56 (2511887): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 15:35 queuedata.json
2025-11-27 00:11:56 (2511887): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 15:37 runpilot2-wrapper.sh
2025-11-27 00:11:56 (2511887): Guest Log: -rw-r--r--. 1 atlas atlas    590103 Nov 26 00:18 input.tar.gz
2025-11-27 00:11:56 (2511887): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Nov 26 00:18 start_atlas.sh
2025-11-27 00:11:56 (2511887): Guest Log: -rw-r--r--. 1 atlas atlas      6486 Nov 26 00:18 init_data.xml
2025-11-27 00:11:56 (2511887): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 00:18 EVNT.47493065._000238.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 00:11:56 (2511887): Guest Log: -rw-r--r--. 1 atlas atlas      2770 Nov 26 00:19 pandaJob.out
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas    991877 Nov 26 00:20 agis_schedconf.cvmfs.json
2025-11-27 00:11:56 (2511887): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 00:20 pilot3
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas 924740653 Nov 26 22:10 HITS.47493068._002371.pool.root.1
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas      1037 Nov 26 22:10 memory_monitor_summary.json
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 22:10 pilot_heartbeat.json
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 22:10 agis_ddmendpoints.agis.ALL.json
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas   1665354 Nov 26 22:10 log.47493068._002371.job.log.tgz.1
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas      8648 Nov 26 22:11 heartbeat.json
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 26 22:11 pilotlog.txt
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas  10673544 Nov 26 22:11 log.47493068._002371.job.log.1
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 22:11 output.list
2025-11-27 00:11:56 (2511887): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 22:11 runtime_log
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas  12359680 Nov 26 22:11 result.tar.gz
2025-11-27 00:11:56 (2511887): Guest Log: -rw-r--r--. 1 atlas atlas      8655 Nov 26 22:11 runtime_log.err
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas       669 Nov 26 22:11 3VHNDmpwcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwaFKDmOv7g2n.diag
2025-11-27 00:11:56 (2511887): Guest Log: Looking for outputfile HITS.47493068._002371.pool.root.1
2025-11-27 00:11:56 (2511887): Guest Log: HITS file was successfully produced
2025-11-27 00:11:56 (2511887): Guest Log: -rw-------. 1 atlas atlas 924740653 Nov 26 22:10 /home/atlas/RunAtlas/HITS.47493068._002371.pool.root.1
2025-11-27 00:11:56 (2511887): Guest Log: Successfully finished the ATLAS job!
2025-11-27 00:11:56 (2511887): Guest Log: Copying the results back to the shared directory!
2025-11-27 00:11:57 (2511887): Guest Log:  *** Contents of shared directory: ***
2025-11-27 00:11:57 (2511887): Guest Log: total 413412
2025-11-27 00:11:57 (2511887): Guest Log: -rw-r--r--. 1 root root 410345841 Nov 26 00:18 ATLAS.root_0
2025-11-27 00:11:57 (2511887): Guest Log: -rw-r--r--. 1 root root      6486 Nov 26 00:18 init_data.xml
2025-11-27 00:11:57 (2511887): Guest Log: -rw-r--r--. 1 root root    590103 Nov 26 00:18 input.tar.gz
2025-11-27 00:11:57 (2511887): Guest Log: -rw-r--r--. 1 root root  12359680 Nov 26 22:11 result.tar.gz
2025-11-27 00:11:57 (2511887): Guest Log: -rw-r--r--. 1 root root     15120 Nov 26 00:18 start_atlas.sh
2025-11-27 00:11:57 (2511887): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 00:11:57 (2511887): VM Completion File Detected.
2025-11-27 00:11:57 (2511887): Powering off VM.
2025-11-27 00:11:57 (2511887): Successfully stopped VM.
2025-11-27 00:11:57 (2511887): Deregistering VM. (boinc_8a984ff454175b38, slot#0)
2025-11-27 00:11:57 (2511887): Removing network bandwidth throttle group from VM.
2025-11-27 00:11:57 (2511887): Removing VM from VirtualBox.
2025-11-27 00:12:02 (2511887): called boinc_finish(0)

</stderr_txt>
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