Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:49 (3991113): wrapper (7.7.26015): starting
00:02:49 (3991113): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 00:02:49] Arguments: --nthreads 12
[2025-11-20 00:02:49] Threads: 12
[2025-11-20 00:02:49] Checking for CVMFS
[2025-11-20 00:02:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 00:02:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 00:02:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 00:02:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 00:02:52] 2.13.2.0 4057 23816 167856 153069 2 105 23367160 39288832 8418 16776704 0 12810580 99.521 12763624 35953 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 00:02:52] CVMFS is ok
[2025-11-20 00:02:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 00:02:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 00:02:52] Further information can be found at the LHC@home message board.
[2025-11-20 00:02:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 00:02:52] Checking for apptainer binary...
[2025-11-20 00:02:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 00:02:52] Running /usr/bin/apptainer --version
[2025-11-20 00:02:52] apptainer version 1.4.4-1.el9
[2025-11-20 00:02:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 00:02:52] c-210-24.aglt2.org
[2025-11-20 00:02:52] apptainer works
[2025-11-20 00:02:53] Set ATHENA_PROC_NUMBER=12
[2025-11-20 00:02:53] Set ATHENA_CORE_NUMBER=12
[2025-11-20 00:02:53] Starting ATLAS job with PandaID=6891580760
[2025-11-20 00:02:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 15:32:15]  *** The last 200 lines of the pilot log: ***
[2025-11-20 15:32:15] 2025-11-20 20:31:28,731 | INFO     | time since job start (55635s) is within the limit (172800.0s)
[2025-11-20 15:32:15] 2025-11-20 20:31:30,750 | INFO     | time since job start (55637s) is within the limit (172800.0s)
[2025-11-20 15:32:15] 2025-11-20 20:31:30,759 | INFO     | monitor loop #3643: job 0:6891580760 is in state 'finished'
[2025-11-20 15:32:15] 2025-11-20 20:31:30,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:32:15] 2025-11-20 20:31:32,758 | INFO     | time since job start (55639s) is within the limit (172800.0s)
[2025-11-20 15:32:15] 2025-11-20 20:31:33,265 | INFO     | monitor loop #3644: job 0:6891580760 is in state 'finished'
[2025-11-20 15:32:15] 2025-11-20 20:31:33,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:32:15] 2025-11-20 20:31:34,765 | INFO     | time since job start (55641s) is within the limit (172800.0s)
[2025-11-20 15:32:15] 2025-11-20 20:31:35,777 | INFO     | monitor loop #3645: job 0:6891580760 is in state 'finished'
[2025-11-20 15:32:15] 2025-11-20 20:31:35,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:32:15] 2025-11-20 20:31:36,777 | INFO     | time since job start (55643s) is within the limit (172800.0s)
[2025-11-20 15:32:15] 2025-11-20 20:31:38,283 | INFO     | monitor loop #3646: job 0:6891580760 is in state 'finished'
[2025-11-20 15:32:15] 2025-11-20 20:31:38,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:32:15] 2025-11-20 20:31:38,794 | INFO     | time since job start (55645s) is within the limit (172800.0s)
[2025-11-20 15:32:15] 2025-11-20 20:31:39,312 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 15:32:15] 2025-11-20 20:31:39,335 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0525499999994
[2025-11-20 15:32:15] 2025-11-20 20:31:39,355 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891580760/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 15:32:15] 2025-11-20 20:31:39,356 | INFO     | extracted standard info from prmon json
[2025-11-20 15:32:15] 2025-11-20 20:31:39,356 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 15:32:15] 2025-11-20 20:31:39,356 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 15:32:15] 2025-11-20 20:31:39,399 | INFO     | fitting pss+swap vs Time
[2025-11-20 15:32:15] 2025-11-20 20:31:39,401 | INFO     | sum of square deviations: 232912718392.23746
[2025-11-20 15:32:15] 2025-11-20 20:31:39,423 | INFO     | sum of deviations: 2035797037090.2424
[2025-11-20 15:32:15] 2025-11-20 20:31:39,423 | INFO     | mean x: 1763642916.0924091
[2025-11-20 15:32:15] 2025-11-20 20:31:39,423 | INFO     | mean y: 3439583.6875687568
[2025-11-20 15:32:15] 2025-11-20 20:31:39,423 | INFO     | intersect: -15411858678.469435
[2025-11-20 15:32:15] 2025-11-20 20:31:39,425 | INFO     | chi2: 23.525564689952233
[2025-11-20 15:32:15] 2025-11-20 20:31:39,426 | INFO     | sum of square deviations: 229091660930.2645
[2025-11-20 15:32:15] 2025-11-20 20:31:39,452 | INFO     | sum of deviations: 2405853828323.456
[2025-11-20 15:32:15] 2025-11-20 20:31:39,452 | INFO     | mean x: 1763642763.613938
[2025-11-20 15:32:15] 2025-11-20 20:31:39,453 | INFO     | mean y: 3454347.8207964604
[2025-11-20 15:32:15] 2025-11-20 20:31:39,453 | INFO     | intersect: -18517807741.79818
[2025-11-20 15:32:15] 2025-11-20 20:31:39,454 | INFO     | chi2: 19.922677445802375
[2025-11-20 15:32:15] 2025-11-20 20:31:39,454 | INFO     | current chi2=19.922677445802375 (change=15.314774763679322 %)
[2025-11-20 15:32:15] 2025-11-20 20:31:39,454 | INFO     | right removable region: 903
[2025-11-20 15:32:15] 2025-11-20 20:31:39,456 | INFO     | sum of square deviations: 229089502262.26428
[2025-11-20 15:32:15] 2025-11-20 20:31:39,480 | INFO     | sum of deviations: 1614739407432.014
[2025-11-20 15:32:15] 2025-11-20 20:31:39,480 | INFO     | mean x: 1763643068.613938
[2025-11-20 15:32:15] 2025-11-20 20:31:39,480 | INFO     | mean y: 3456376.363938053
[2025-11-20 15:32:15] 2025-11-20 20:31:39,480 | INFO     | intersect: -12427597580.333858
[2025-11-20 15:32:15] 2025-11-20 20:31:39,481 | INFO     | chi2: 19.781043709248095
[2025-11-20 15:32:15] 2025-11-20 20:31:39,482 | INFO     | current chi2=19.781043709248095 (change=15.916816578279299 %)
[2025-11-20 15:32:15] 2025-11-20 20:31:39,482 | INFO     | left removable region: 10
[2025-11-20 15:32:15] 2025-11-20 20:31:39,485 | INFO     | sum of square deviations: 220828707094.10092
[2025-11-20 15:32:15] 2025-11-20 20:31:39,524 | INFO     | sum of deviations: 1718038978623.6882
[2025-11-20 15:32:15] 2025-11-20 20:31:39,525 | INFO     | mean x: 1763643038.1601343
[2025-11-20 15:32:15] 2025-11-20 20:31:39,525 | INFO     | mean y: 3487989.9462486003
[2025-11-20 15:32:15] 2025-11-20 20:31:39,525 | INFO     | intersect: -13717588059.492603
[2025-11-20 15:32:15] 2025-11-20 20:31:39,526 | INFO     | chi2: 13.192828135104307
[2025-11-20 15:32:15] 2025-11-20 20:31:39,526 | INFO     | current memory leak: 7.78 B/s (using 893 data points, chi2=13.19)
[2025-11-20 15:32:15] 2025-11-20 20:31:39,529 | INFO     | could have reported an average CPU frequency of 2600 MHz (34 samples)
[2025-11-20 15:32:15] 2025-11-20 20:31:39,529 | INFO     | ..............................
[2025-11-20 15:32:15] 2025-11-20 20:31:39,529 | INFO     | . Timing measurements:
[2025-11-20 15:32:15] 2025-11-20 20:31:39,529 | INFO     | . get job = 0 s
[2025-11-20 15:32:15] 2025-11-20 20:31:39,529 | INFO     | . initial setup = 6 s
[2025-11-20 15:32:15] 2025-11-20 20:31:39,529 | INFO     | . payload setup = 53 s
[2025-11-20 15:32:15] 2025-11-20 20:31:39,529 | INFO     | . stage-in = 0 s
[2025-11-20 15:32:15] 2025-11-20 20:31:39,530 | INFO     | . payload execution = 55467 s
[2025-11-20 15:32:15] 2025-11-20 20:31:39,530 | INFO     | . stage-out = 9 s
[2025-11-20 15:32:15] 2025-11-20 20:31:39,530 | INFO     | . log creation = 2 s
[2025-11-20 15:32:15] 2025-11-20 20:31:39,530 | INFO     | ..............................
[2025-11-20 15:32:15] 2025-11-20 20:31:39,791 | INFO     | 
[2025-11-20 15:32:15] 2025-11-20 20:31:39,791 | INFO     | job summary report
[2025-11-20 15:32:15] 2025-11-20 20:31:39,791 | INFO     | --------------------------------------------------
[2025-11-20 15:32:15] 2025-11-20 20:31:39,792 | INFO     | PanDA job id: 6891580760
[2025-11-20 15:32:15] 2025-11-20 20:31:39,792 | INFO     | task id: 47493068
[2025-11-20 15:32:15] 2025-11-20 20:31:39,792 | INFO     | errors: (none)
[2025-11-20 15:32:15] 2025-11-20 20:31:39,792 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 15:32:15] 2025-11-20 20:31:39,792 | INFO     | pilot state: finished 
[2025-11-20 15:32:15] 2025-11-20 20:31:39,792 | INFO     | transexitcode: 0
[2025-11-20 15:32:15] 2025-11-20 20:31:39,792 | INFO     | exeerrorcode: 0
[2025-11-20 15:32:15] 2025-11-20 20:31:39,792 | INFO     | exeerrordiag: 
[2025-11-20 15:32:15] 2025-11-20 20:31:39,792 | INFO     | exitcode: 0
[2025-11-20 15:32:15] 2025-11-20 20:31:39,793 | INFO     | exitmsg: OK
[2025-11-20 15:32:15] 2025-11-20 20:31:39,793 | INFO     | cpuconsumptiontime: 296006 s
[2025-11-20 15:32:15] 2025-11-20 20:31:39,793 | INFO     | nevents: 1000
[2025-11-20 15:32:15] 2025-11-20 20:31:39,793 | INFO     | neventsw: 0
[2025-11-20 15:32:15] 2025-11-20 20:31:39,793 | INFO     | pid: 4003925
[2025-11-20 15:32:15] 2025-11-20 20:31:39,793 | INFO     | pgrp: 4003925
[2025-11-20 15:32:15] 2025-11-20 20:31:39,793 | INFO     | corecount: 12
[2025-11-20 15:32:15] 2025-11-20 20:31:39,793 | INFO     | event service: False
[2025-11-20 15:32:15] 2025-11-20 20:31:39,793 | INFO     | sizes: {0: 2297023, 1: 2297023, 2: 2297250, 4: 2297250, 15: 2297278, 26: 2297306, 35: 2297724, 37: 2297752, 55525: 2349466, 55535: 2360056, 55538: 2360112, 55575: 
[2025-11-20 15:32:15] 2025-11-20 20:31:39,794 | INFO     | --------------------------------------------------
[2025-11-20 15:32:15] 2025-11-20 20:31:39,794 | INFO     | 
[2025-11-20 15:32:15] 2025-11-20 20:31:39,794 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-20 15:32:15] 2025-11-20 20:31:39,864 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,865 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,865 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,865 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,865 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,865 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,865 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,866 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,866 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,866 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,866 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,866 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,866 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,866 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,866 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,866 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,867 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 15:32:15] 2025-11-20 20:31:39,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,867 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 15:32:15] 2025-11-20 20:31:39,867 | INFO     | job 6891580760 has completed (purged errors)
[2025-11-20 15:32:15] 2025-11-20 20:31:39,867 | INFO     | overall cleanup function is called
[2025-11-20 15:32:15] 2025-11-20 20:31:40,907 | INFO     | --- collectZombieJob: --- 10, [4003925]
[2025-11-20 15:32:15] 2025-11-20 20:31:40,907 | INFO     | zombie collector waiting for pid 4003925
[2025-11-20 15:32:15] 2025-11-20 20:31:40,908 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 15:32:15] 2025-11-20 20:31:40,908 | INFO     | collected zombie processes
[2025-11-20 15:32:15] 2025-11-20 20:31:40,908 | INFO     | will attempt to kill all subprocesses of pid=4003925
[2025-11-20 15:32:15] 2025-11-20 20:31:41,702 | INFO     | process IDs to be killed: [4003925] (in reverse order)
[2025-11-20 15:32:15] 2025-11-20 20:31:42,362 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 15:32:15] 2025-11-20 20:31:42,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 15:32:15] 2025-11-20 20:31:42,373 | INFO     | did not find any defunct processes belonging to 4003925
[2025-11-20 15:32:15] 2025-11-20 20:31:42,384 | INFO     | did not find any defunct processes belonging to 4003925
[2025-11-20 15:32:15] 2025-11-20 20:31:42,388 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 15:32:15] 2025-11-20 20:31:42,389 | INFO     | ready for new job
[2025-11-20 15:32:15] 2025-11-20 20:31:42,389 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 15:32:15] 2025-11-20 20:31:42,395 | INFO     | ***************************************
[2025-11-20 15:32:15] 2025-11-20 20:31:42,395 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 15:32:15] 2025-11-20 20:31:42,395 | INFO     | ***************************************
[2025-11-20 15:32:15] 2025-11-20 20:31:42,395 | INFO     | 
[2025-11-20 15:32:15] 2025-11-20 20:31:42,397 | INFO     | architecture information:
[2025-11-20 15:32:15] 2025-11-20 20:31:42,400 | INFO     | executing command: cat /etc/os-release
[2025-11-20 15:32:15] 2025-11-20 20:31:42,456 | INFO     | cat /etc/os-release:
[2025-11-20 15:32:15] NAME="CentOS Linux"
[2025-11-20 15:32:15] VERSION="7 (Core)"
[2025-11-20 15:32:15] ID="centos"
[2025-11-20 15:32:15] ID_LIKE="rhel fedora"
[2025-11-20 15:32:15] VERSION_ID="7"
[2025-11-20 15:32:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 15:32:15] ANSI_COLOR="0;31"
[2025-11-20 15:32:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 15:32:15] HOME_URL="https://www.centos.org/"
[2025-11-20 15:32:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 15:32:15] 
[2025-11-20 15:32:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 15:32:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 15:32:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 15:32:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 15:32:15] 
[2025-11-20 15:32:15] 2025-11-20 20:31:42,459 | INFO     | ***************************************
[2025-11-20 15:32:15] 2025-11-20 20:31:42,962 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-20 15:32:15] 2025-11-20 20:31:43,053 | INFO     | sufficient remaining disk space (49318723584 B)
[2025-11-20 15:32:15] 2025-11-20 20:31:43,053 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 15:32:15] 2025-11-20 20:31:43,053 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 15:32:15] 2025-11-20 20:31:43,053 | INFO     | update_server=False
[2025-11-20 15:32:15] 2025-11-20 20:31:43,054 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 15:32:15] 2025-11-20 20:31:43,301 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 15:32:15] 2025-11-20 20:31:43,301 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 15:32:15] 2025-11-20 20:31:43,302 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 15:32:15] 2025-11-20 20:31:43,302 | INFO     | will abort loop
[2025-11-20 15:32:15] 2025-11-20 20:31:43,455 | INFO     | all job control threads have been joined
[2025-11-20 15:32:15] 2025-11-20 20:31:43,855 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 15:32:15] 2025-11-20 20:31:43,867 | INFO     | all payload control threads have been joined
[2025-11-20 15:32:15] 2025-11-20 20:31:43,953 | INFO     | all data control threads have been joined
[2025-11-20 15:32:15] 2025-11-20 20:31:44,061 | INFO     | [job] retrieve thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:44,307 | INFO     | [job] job monitor thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:44,415 | INFO     | [data] copytool_in thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:44,460 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:44,461 | INFO     | [job] control thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:44,805 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 15:32:15] 2025-11-20 20:31:44,875 | INFO     | [payload] control thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:44,977 | INFO     | [job] validate thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:44,989 | INFO     | [data] control thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:44,992 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:45,068 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:45,287 | INFO     | [payload] validate_post thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:45,435 | INFO     | [payload] failed_post thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:45,510 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:45,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 15:32:15] 2025-11-20 20:31:45,816 | INFO     | [job] queue monitor thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:45,866 | INFO     | [data] copytool_out thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:49,564 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 15:32:15] 2025-11-20 20:31:53,837 | INFO     | [monitor] cgroup control has ended
[2025-11-20 15:32:15] 2025-11-20 20:31:54,023 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140003498760000)>', '<ExcThread(monitor, started 140003132806912)>']
[2025-11-20 15:32:15] 2025-11-20 20:31:59,049 | INFO     | all workflow threads have been joined
[2025-11-20 15:32:15] 2025-11-20 20:31:59,049 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 15:32:15] 2025-11-20 20:31:59,050 | INFO     | traces error code: 0
[2025-11-20 15:32:15] 2025-11-20 20:31:59,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 15:32:15] 2025-11-20 20:32:13,105 | INFO     | PID=3995177 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 15:32:15] 2025-11-20 20:32:13,106 | INFO     | .. there are 9 such processes running
[2025-11-20 15:32:15] 2025-11-20 20:32:13,106 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 15:32:15] 2025-11-20 20:32:13,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 15:32:15] 2025-11-20 20:32:13,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 15:32:15] 2025-11-20 20:32:13,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 15:32:15] 2025-11-20 20:32:13,107 | CRITICAL | thread 'MainThread' is not alive
[2025-11-20 15:32:15] 2025-11-20 20:32:13,115 | INFO     | [monitor] control thread has ended
[2025-11-20 15:32:15] 2025-11-20 20:32:13,505 [wrapper] ==== pilot stdout END ====
[2025-11-20 15:32:15] 2025-11-20 20:32:13,538 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 15:32:15] 2025-11-20 20:32:13,614 [wrapper] pilotpid: 3995177
[2025-11-20 15:32:15] 2025-11-20 20:32:13,653 [wrapper] Pilot exit status: 0
[2025-11-20 15:32:15] 2025-11-20 20:32:13,768 [wrapper] pandaids: 6891580760
[2025-11-20 15:32:15] 2025-11-20 20:32:13,901 [wrapper] cleanup supervisor_pilot 1097954 3995178
[2025-11-20 15:32:15] 2025-11-20 20:32:13,925 [wrapper] Test setup, not cleaning
[2025-11-20 15:32:15] 2025-11-20 20:32:13,948 [wrapper] apfmon messages muted
[2025-11-20 15:32:15] 2025-11-20 20:32:13,979 [wrapper] ==== wrapper stdout END ====
[2025-11-20 15:32:15] 2025-11-20 20:32:14,019 [wrapper] ==== wrapper stderr END ====
[2025-11-20 15:32:15]  *** Error codes and diagnostics ***
[2025-11-20 15:32:15]     "exeErrorCode": 0,
[2025-11-20 15:32:15]     "exeErrorDiag": "",
[2025-11-20 15:32:15]     "pilotErrorCode": 0,
[2025-11-20 15:32:15]     "pilotErrorDiag": "",
[2025-11-20 15:32:15]  *** Listing of results directory ***
[2025-11-20 15:32:15] total 1319084
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 11:45 pilot3.tar.gz
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:52 queuedata.json
[2025-11-20 15:32:15] -rwx------. 1 boincer umatlas     36292 Nov 18 11:53 runpilot2-wrapper.sh
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas       100 Nov 20 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 15:32:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 00:02 run_atlas
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas       105 Nov 20 00:02 job.xml
[2025-11-20 15:32:15] -rw-r--r--. 2 boincer umatlas 410059764 Nov 20 00:02 EVNT.47493065._000409.pool.root.1
[2025-11-20 15:32:15] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:02 start_atlas.sh
[2025-11-20 15:32:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 00:02 shared
[2025-11-20 15:32:15] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 00:02 input.tar.gz
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas         0 Nov 20 00:02 boinc_lockfile
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas      2770 Nov 20 00:02 pandaJob.out
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas    989427 Nov 20 00:04 agis_schedconf.cvmfs.json
[2025-11-20 15:32:15] drwx------. 5 boincer umatlas      4096 Nov 20 00:04 pilot3
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas       533 Nov 20 14:55 boinc_task_state.xml
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas 916772948 Nov 20 15:29 HITS.47493068._004081.pool.root.1
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas      1052 Nov 20 15:30 memory_monitor_summary.json
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas   1526164 Nov 20 15:30 agis_ddmendpoints.agis.ALL.json
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas      6658 Nov 20 15:30 init_data.xml
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas   2558248 Nov 20 15:30 log.47493068._004081.job.log.tgz.1
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas        95 Nov 20 15:31 pilot_heartbeat.json
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas      8637 Nov 20 15:31 heartbeat.json
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas        29 Nov 20 15:32 wrapper_checkpoint.txt
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas       892 Nov 20 15:32 pilotlog.txt
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas   7440280 Nov 20 15:32 log.47493068._004081.job.log.1
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas       353 Nov 20 15:32 output.list
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas       620 Nov 20 15:32 runtime_log
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas  10014720 Nov 20 15:32 result.tar.gz
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas      8706 Nov 20 15:32 runtime_log.err
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas       660 Nov 20 15:32 OurNDm97df8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdvFKDmSL2TJo.diag
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 15:32 boinc_mmap_file
[2025-11-20 15:32:15] -rw-r--r--. 1 boincer umatlas     21769 Nov 20 15:32 stderr.txt
[2025-11-20 15:32:15] HITS file was successfully produced:
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas 916772948 Nov 20 15:29 shared/HITS.pool.root.1
[2025-11-20 15:32:15]  *** Contents of shared directory: ***
[2025-11-20 15:32:15] total 1306120
[2025-11-20 15:32:15] -rw-r--r--. 2 boincer umatlas 410059764 Nov 20 00:02 ATLAS.root_0
[2025-11-20 15:32:15] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:02 start_atlas.sh
[2025-11-20 15:32:15] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 00:02 input.tar.gz
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas 916772948 Nov 20 15:29 HITS.pool.root.1
[2025-11-20 15:32:15] -rw-------. 1 boincer umatlas  10014720 Nov 20 15:32 result.tar.gz
15:32:17 (3991113): run_atlas exited; CPU time 296125.931197
15:32:17 (3991113): called boinc_finish(0)

</stderr_txt>
]]>

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