Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:50:01 (2538794): wrapper (7.7.26015): starting
05:50:01 (2538794): wrapper: running run_atlas (--nthreads 2)
[2025-11-22 05:50:01] Arguments: --nthreads 2
[2025-11-22 05:50:01] Threads: 2
[2025-11-22 05:50:01] Checking for CVMFS
[2025-11-22 05:50:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 05:50:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 05:50:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 05:50:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 05:50:01] 2.9.2.0 1943952 5099 56828 153159 0 81 31387254 36864001 0 130560 0 1648205 99.862 344265 5473 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 05:50:01] CVMFS is ok
[2025-11-22 05:50:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 05:50:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 05:50:01] Further information can be found at the LHC@home message board.
[2025-11-22 05:50:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 05:50:01] Checking for apptainer binary...
[2025-11-22 05:50:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 05:50:01] Running /usr/bin/apptainer --version
[2025-11-22 05:50:01] apptainer version 1.4.1-1.1
[2025-11-22 05:50:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 05:50:01] madmaxA277a
[2025-11-22 05:50:01] apptainer works
[2025-11-22 05:50:01] Set ATHENA_PROC_NUMBER=2
[2025-11-22 05:50:01] Set ATHENA_CORE_NUMBER=2
[2025-11-22 05:50:01] Starting ATLAS job with PandaID=6892522236
[2025-11-22 05:50:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 18:01:21]  *** The last 200 lines of the pilot log: ***
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | job 6892522236 has completed (purged errors)
[2025-11-22 18:01:21] 2025-11-22 17:00:40,552 | INFO     | overall cleanup function is called
[2025-11-22 18:01:21] 2025-11-22 17:00:41,559 | INFO     | --- collectZombieJob: --- 10, [2548922]
[2025-11-22 18:01:21] 2025-11-22 17:00:41,559 | INFO     | zombie collector waiting for pid 2548922
[2025-11-22 18:01:21] 2025-11-22 17:00:41,560 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 18:01:21] 2025-11-22 17:00:41,560 | INFO     | collected zombie processes
[2025-11-22 18:01:21] 2025-11-22 17:00:41,560 | INFO     | will attempt to kill all subprocesses of pid=2548922
[2025-11-22 18:01:21] 2025-11-22 17:00:41,594 | INFO     | process IDs to be killed: [2548922] (in reverse order)
[2025-11-22 18:01:21] 2025-11-22 17:00:41,614 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 18:01:21] 2025-11-22 17:00:41,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 18:01:21] 2025-11-22 17:00:41,615 | INFO     | did not find any defunct processes belonging to 2548922
[2025-11-22 18:01:21] 2025-11-22 17:00:41,615 | INFO     | did not find any defunct processes belonging to 2548922
[2025-11-22 18:01:21] 2025-11-22 17:00:41,616 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 18:01:21] 2025-11-22 17:00:41,616 | INFO     | ready for new job
[2025-11-22 18:01:21] 2025-11-22 17:00:41,616 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 18:01:21] 2025-11-22 17:00:41,617 | INFO     | ***************************************
[2025-11-22 18:01:21] 2025-11-22 17:00:41,617 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 18:01:21] 2025-11-22 17:00:41,617 | INFO     | ***************************************
[2025-11-22 18:01:21] 2025-11-22 17:00:41,617 | INFO     | 
[2025-11-22 18:01:21] 2025-11-22 17:00:41,618 | INFO     | architecture information:
[2025-11-22 18:01:21] 2025-11-22 17:00:41,618 | INFO     | executing command: cat /etc/os-release
[2025-11-22 18:01:21] 2025-11-22 17:00:41,626 | INFO     | cat /etc/os-release:
[2025-11-22 18:01:21] NAME="CentOS Linux"
[2025-11-22 18:01:21] VERSION="7 (Core)"
[2025-11-22 18:01:21] ID="centos"
[2025-11-22 18:01:21] ID_LIKE="rhel fedora"
[2025-11-22 18:01:21] VERSION_ID="7"
[2025-11-22 18:01:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 18:01:21] ANSI_COLOR="0;31"
[2025-11-22 18:01:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 18:01:21] HOME_URL="https://www.centos.org/"
[2025-11-22 18:01:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 18:01:21] 
[2025-11-22 18:01:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 18:01:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 18:01:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 18:01:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 18:01:21] 
[2025-11-22 18:01:21] 2025-11-22 17:00:41,626 | INFO     | ***************************************
[2025-11-22 18:01:21] 2025-11-22 17:00:42,130 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-22 18:01:21] 2025-11-22 17:00:42,141 | INFO     | sufficient remaining disk space (484505026560 B)
[2025-11-22 18:01:21] 2025-11-22 17:00:42,141 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 18:01:21] 2025-11-22 17:00:42,141 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 18:01:21] 2025-11-22 17:00:42,141 | INFO     | update_server=False
[2025-11-22 18:01:21] 2025-11-22 17:00:42,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 18:01:21] 2025-11-22 17:00:42,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 18:01:21] 2025-11-22 17:00:42,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 18:01:21] 2025-11-22 17:00:42,141 | INFO     | aborting loop
[2025-11-22 18:01:21] 2025-11-22 17:00:42,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 18:01:21] 2025-11-22 17:00:42,624 | INFO     | all job control threads have been joined
[2025-11-22 18:01:21] 2025-11-22 17:00:42,719 | INFO     | all payload control threads have been joined
[2025-11-22 18:01:21] 2025-11-22 17:00:42,856 | INFO     | all data control threads have been joined
[2025-11-22 18:01:21] 2025-11-22 17:00:43,147 | INFO     | [job] queue monitor thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:43,148 | INFO     | [job] retrieve thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:43,149 | INFO     | [job] job monitor thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:43,630 | INFO     | [job] control thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:43,662 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:43,679 | INFO     | [data] copytool_in thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:43,725 | INFO     | [payload] control thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:43,862 | INFO     | [data] control thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:43,947 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:44,050 | INFO     | [job] validate thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:44,067 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 18:01:21] 2025-11-22 17:00:44,197 | INFO     | [data] copytool_out thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:44,495 | INFO     | [payload] validate_post thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:44,524 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:44,686 | INFO     | [payload] failed_post thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:48,074 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:00:52,213 | INFO     | job.realtimelogging is not enabled
[2025-11-22 18:01:21] 2025-11-22 17:00:53,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 18:01:21] 2025-11-22 17:01:12,953 | INFO     | PID=2542502 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 18:01:21] 2025-11-22 17:01:12,953 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 18:01:21] 2025-11-22 17:01:12,953 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 18:01:21] 2025-11-22 17:01:12,953 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 18:01:21] 2025-11-22 17:01:16,322 | INFO     | [monitor] cgroup control has ended
[2025-11-22 18:01:21] 2025-11-22 17:01:16,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140110099429184)>', '<ExcThread(monitor, started 140109584250624)>']
[2025-11-22 18:01:21] 2025-11-22 17:01:16,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 18:01:21] 2025-11-22 17:01:16,975 | INFO     | [monitor] control thread has ended
[2025-11-22 18:01:21] 2025-11-22 17:01:21,793 | INFO     | all workflow threads have been joined
[2025-11-22 18:01:21] 2025-11-22 17:01:21,794 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 18:01:21] 2025-11-22 17:01:21,795 | INFO     | traces error code: 0
[2025-11-22 18:01:21] 2025-11-22 17:01:21,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 18:01:21] 2025-11-22 17:01:21,837 [wrapper] ==== pilot stdout END ====
[2025-11-22 18:01:21] 2025-11-22 17:01:21,839 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 18:01:21] 2025-11-22 17:01:21,842 [wrapper] pilotpid: 2542502
[2025-11-22 18:01:21] 2025-11-22 17:01:21,844 [wrapper] Pilot exit status: 0
[2025-11-22 18:01:21] 2025-11-22 17:01:21,850 [wrapper] pandaids: 6892522236
[2025-11-22 18:01:21] 2025-11-22 17:01:21,862 [wrapper] cleanup supervisor_pilot 2618931 2542503
[2025-11-22 18:01:21] 2025-11-22 17:01:21,864 [wrapper] Test setup, not cleaning
[2025-11-22 18:01:21] 2025-11-22 17:01:21,867 [wrapper] apfmon messages muted
[2025-11-22 18:01:21] 2025-11-22 17:01:21,869 [wrapper] ==== wrapper stdout END ====
[2025-11-22 18:01:21] 2025-11-22 17:01:21,871 [wrapper] ==== wrapper stderr END ====
[2025-11-22 18:01:21]  *** Error codes and diagnostics ***
[2025-11-22 18:01:21]     "exeErrorCode": 0,
[2025-11-22 18:01:21]     "exeErrorDiag": "",
[2025-11-22 18:01:21]     "pilotErrorCode": 0,
[2025-11-22 18:01:21]     "pilotErrorDiag": "",
[2025-11-22 18:01:21]  *** Listing of results directory ***
[2025-11-22 18:01:21] total 1310100
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-22 18:01:21] -rwx------ 1 boinc boinc     36292 Nov 19 08:04 runpilot2-wrapper.sh
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:04 queuedata.json
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc       100 Nov 22 05:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 18:01:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 05:50 run_atlas
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc       105 Nov 22 05:50 job.xml
[2025-11-22 18:01:21] -rw-r--r-- 2 boinc boinc 409074517 Nov 22 05:50 EVNT.47493027._000031.pool.root.1
[2025-11-22 18:01:21] -rw-r--r-- 2 boinc boinc    590093 Nov 22 05:50 input.tar.gz
[2025-11-22 18:01:21] -rw-r--r-- 2 boinc boinc     15120 Nov 22 05:50 start_atlas.sh
[2025-11-22 18:01:21] drwxrwx--x 2 boinc boinc      4096 Nov 22 05:50 shared
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc         0 Nov 22 05:50 boinc_setup_complete
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc      6210 Nov 22 05:50 init_data.xml
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc         0 Nov 22 05:50 boinc_lockfile
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc      2771 Nov 22 05:50 pandaJob.out
[2025-11-22 18:01:21] -rw------- 1 boinc boinc    989752 Nov 22 05:50 agis_schedconf.cvmfs.json
[2025-11-22 18:01:21] drwx------ 5 boinc boinc      4096 Nov 22 05:50 pilot3
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc       531 Nov 22 17:57 boinc_task_state.xml
[2025-11-22 18:01:21] -rw------- 1 boinc boinc 913827071 Nov 22 18:00 HITS.47493029._000255.pool.root.1
[2025-11-22 18:01:21] -rw------- 1 boinc boinc      1038 Nov 22 18:00 memory_monitor_summary.json
[2025-11-22 18:01:21] -rw------- 1 boinc boinc   1526164 Nov 22 18:00 agis_ddmendpoints.agis.ALL.json
[2025-11-22 18:01:21] -rw------- 1 boinc boinc   1214397 Nov 22 18:00 log.47493029._000255.job.log.tgz.1
[2025-11-22 18:01:21] -rw------- 1 boinc boinc        95 Nov 22 18:00 pilot_heartbeat.json
[2025-11-22 18:01:21] -rw------- 1 boinc boinc      8569 Nov 22 18:00 heartbeat.json
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc      8192 Nov 22 18:01 boinc_mmap_file
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc        28 Nov 22 18:01 wrapper_checkpoint.txt
[2025-11-22 18:01:21] -rw------- 1 boinc boinc      4824 Nov 22 18:01 pilotlog.txt
[2025-11-22 18:01:21] -rw------- 1 boinc boinc   6151589 Nov 22 18:01 log.47493029._000255.job.log.1
[2025-11-22 18:01:21] -rw------- 1 boinc boinc       353 Nov 22 18:01 output.list
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc       620 Nov 22 18:01 runtime_log
[2025-11-22 18:01:21] -rw------- 1 boinc boinc   7383040 Nov 22 18:01 result.tar.gz
[2025-11-22 18:01:21] -rw------- 1 boinc boinc       670 Nov 22 18:01 AFtLDmMQrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7bGKDmiiGPfn.diag
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc      8803 Nov 22 18:01 runtime_log.err
[2025-11-22 18:01:21] -rw-r--r-- 1 boinc boinc     11942 Nov 22 18:01 stderr.txt
[2025-11-22 18:01:21] HITS file was successfully produced:
[2025-11-22 18:01:21] -rw------- 1 boinc boinc 913827071 Nov 22 18:00 shared/HITS.pool.root.1
[2025-11-22 18:01:21]  *** Contents of shared directory: ***
[2025-11-22 18:01:21] total 1299716
[2025-11-22 18:01:21] -rw-r--r-- 2 boinc boinc 409074517 Nov 22 05:50 ATLAS.root_0
[2025-11-22 18:01:21] -rw-r--r-- 2 boinc boinc    590093 Nov 22 05:50 input.tar.gz
[2025-11-22 18:01:21] -rw-r--r-- 2 boinc boinc     15120 Nov 22 05:50 start_atlas.sh
[2025-11-22 18:01:21] -rw------- 1 boinc boinc 913827071 Nov 22 18:00 HITS.pool.root.1
[2025-11-22 18:01:21] -rw------- 1 boinc boinc   7383040 Nov 22 18:01 result.tar.gz
18:01:23 (2538794): run_atlas exited; CPU time 86881.010589
18:01:23 (2538794): called boinc_finish(0)

</stderr_txt>
]]>

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