Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:56:25 (302483): wrapper (7.7.26015): starting
01:56:25 (302483): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 01:56:25] Arguments: --nthreads 8
[2025-11-19 01:56:25] Threads: 8
[2025-11-19 01:56:25] Checking for CVMFS
[2025-11-19 01:56:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 01:56:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 01:56:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 01:56:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 01:56:26] 2.11.3.0 137784 18156 197988 153037 3 317 35645892 45568000 9963 130560 0 111215844 99.817 64388025 20642 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-19 01:56:26] CVMFS is ok
[2025-11-19 01:56:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 01:56:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 01:56:26] Further information can be found at the LHC@home message board.
[2025-11-19 01:56:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 01:56:26] Checking for apptainer binary...
[2025-11-19 01:56:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 01:56:26] Running /usr/bin/apptainer --version
[2025-11-19 01:56:26] apptainer version 1.4.1-1.el9
[2025-11-19 01:56:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 01:56:28] wns0008.triumf.lcg
[2025-11-19 01:56:28] apptainer works
[2025-11-19 01:56:28] Set ATHENA_PROC_NUMBER=8
[2025-11-19 01:56:28] Set ATHENA_CORE_NUMBER=8
[2025-11-19 01:56:28] Starting ATLAS job with PandaID=6892526579
[2025-11-19 01:56:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 02:10:09]  *** The last 200 lines of the pilot log: ***
[2025-11-19 02:10:09] 2025-11-19 10:09:26,538 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 02:10:09] 2025-11-19 10:09:26,538 | WARNING  | wrong length of table data, x=[1763546446.0, 1763546507.0, 1763546568.0, 1763546629.0, 1763546690.0, 1763546751.0, 1763546812.0], y=[2654.0, 265973.0, 406828.0, 61
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | ..............................
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | . Timing measurements:
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | . get job = 0 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | . initial setup = 5 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . payload setup = 49 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . stage-in = 0 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . payload execution = 427 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . stage-out = 1 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . log creation = 0 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | ..............................
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892526579/pilotlog.txt
[2025-11-19 02:10:09] 2025-11-19 10:09:26,557 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-19 02:10:09] - Log from pilotlog.txt -
[2025-11-19 02:10:09] 2025-11-19 10:09:26,536 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892526579/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 02:10:09] 2025-11-19 10:09:26,537 | INFO     | extracted standard info from prmon json
[2025-11-19 02:10:09] 2025-11-19 10:09:26,537 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 02:10:09] 2025-11-19 10:09:26,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 02:10:09] 2025-11-19 10:09:26,538 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 02:10:09] 2025-11-19 10:09:26,538 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 02:10:09] 2025-11-19 10:09:26,538 | WARNING  | wrong length of table data, x=[1763546446.0, 1763546507.0, 1763546568.0, 1763546629.0, 1763546690.0, 1763546751.0, 1763546812.0], y=[2654.0, 265973.0, 406828.0, 61
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | ..............................
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | . Timing measurements:
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | . get job = 0 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | . initial setup = 5 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . payload setup = 49 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . stage-in = 0 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . payload execution = 427 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . stage-out = 1 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . log creation = 0 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | ..............................
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892526579/pilotlog.txt
[2025-11-19 02:10:09] 2025-11-19 10:09:26,557 | WARNING  | 
[2025-11-19 02:10:09] [begin log extracts]
[2025-11-19 02:10:09] - Log from pilotlog.txt -
[2025-11-19 02:10:09] 2025-11-19 10:09:26,536 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892526579/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 02:10:09] 2025-11-19 10:09:26,537 | INFO     | extracted standard info from prmon json
[2025-11-19 02:10:09] 2025-11-19 10:09:26,537 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 02:10:09] 2025-11-19 10:09:26,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 02:10:09] 2025-11-19 10:09:26,538 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 02:10:09] 2025-11-19 10:09:26,538 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 02:10:09] 2025-11-19 10:09:26,538 | WARNING  | wrong length of table data, x=[1763546446.0, 1763546507.0, 1763546568.0, 1763546629.0, 1763546690.0, 1763546751.0, 1763546812.0], y=[2654.0, 265973.0, 406828.0, 61
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | ..............................
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | . Timing measurements:
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | . get job = 0 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,539 | INFO     | . initial setup = 5 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . payload setup = 49 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . stage-in = 0 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . payload execution = 427 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . stage-out = 1 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | . log creation = 0 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | ..............................
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 02:10:09] 2025-11-19 10:09:26,540 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892526579/pilotlog.txt
[2025-11-19 02:10:09] [end log extracts]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,557 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-19 02:10:09] 2025-11-19 10:09:26,558 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-19 02:10:09] 2025-11-19 10:09:26,632 | INFO     | 
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | job summary report
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | --------------------------------------------------
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | PanDA job id: 6892526579
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | task id: 47493029
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-19 02:06:56,431 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | pilot state: failed 
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | transexitcode: 65
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | exeerrorcode: 65
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-19 02:10:09] 2025-11-19 10:09:26,633 | INFO     | exitcode: 65
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | cpuconsumptiontime: 62 s
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | nevents: 0
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | neventsw: 0
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | pid: 313408
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | pgrp: 313408
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | corecount: 8
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | event service: False
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | sizes: {0: 2296372, 1: 2296970, 2: 2297054, 3: 2297110, 5: 2297337, 16: 2297337, 28: 2297493, 37: 2297783, 39: 2297811, 477: 2323359, 478: 2323363, 481: 2327989, 4
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | --------------------------------------------------
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | 
[2025-11-19 02:10:09] 2025-11-19 10:09:26,634 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-19 02:10:09] 2025-11-19 10:09:26,664 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,664 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,664 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,664 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,664 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,665 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 02:10:09] 2025-11-19 10:09:26,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,666 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 02:10:09] 2025-11-19 10:09:26,666 | INFO     | job 6892526579 has completed (purged errors)
[2025-11-19 02:10:09] 2025-11-19 10:09:26,666 | INFO     | overall cleanup function is called
[2025-11-19 02:10:09] 2025-11-19 10:09:27,673 | INFO     | --- collectZombieJob: --- 10, [313408]
[2025-11-19 02:10:09] 2025-11-19 10:09:27,674 | INFO     | zombie collector waiting for pid 313408
[2025-11-19 02:10:09] 2025-11-19 10:09:27,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 02:10:09] 2025-11-19 10:09:27,674 | INFO     | collected zombie processes
[2025-11-19 02:10:09] 2025-11-19 10:09:27,674 | INFO     | will attempt to kill all subprocesses of pid=313408
[2025-11-19 02:10:09] 2025-11-19 10:09:27,884 | INFO     | process IDs to be killed: [313408] (in reverse order)
[2025-11-19 02:10:09] 2025-11-19 10:09:27,941 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 02:10:09] 2025-11-19 10:09:27,941 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 02:10:09] 2025-11-19 10:09:27,948 | INFO     | did not find any defunct processes belonging to 313408
[2025-11-19 02:10:09] 2025-11-19 10:09:27,955 | INFO     | did not find any defunct processes belonging to 313408
[2025-11-19 02:10:09] 2025-11-19 10:09:27,956 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 02:10:09] 2025-11-19 10:09:27,957 | INFO     | ready for new job
[2025-11-19 02:10:09] 2025-11-19 10:09:27,957 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 02:10:09] 2025-11-19 10:09:27,959 | INFO     | ***************************************
[2025-11-19 02:10:09] 2025-11-19 10:09:27,959 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 02:10:09] 2025-11-19 10:09:27,959 | INFO     | ***************************************
[2025-11-19 02:10:09] 2025-11-19 10:09:27,959 | INFO     | 
[2025-11-19 02:10:09] 2025-11-19 10:09:27,961 | INFO     | architecture information:
[2025-11-19 02:10:09] 2025-11-19 10:09:27,961 | INFO     | executing command: cat /etc/os-release
[2025-11-19 02:10:09] 2025-11-19 10:09:27,983 | INFO     | cat /etc/os-release:
[2025-11-19 02:10:09] NAME="CentOS Linux"
[2025-11-19 02:10:09] VERSION="7 (Core)"
[2025-11-19 02:10:09] ID="centos"
[2025-11-19 02:10:09] ID_LIKE="rhel fedora"
[2025-11-19 02:10:09] VERSION_ID="7"
[2025-11-19 02:10:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 02:10:09] ANSI_COLOR="0;31"
[2025-11-19 02:10:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 02:10:09] HOME_URL="https://www.centos.org/"
[2025-11-19 02:10:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 02:10:09] 
[2025-11-19 02:10:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 02:10:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 02:10:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 02:10:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 02:10:09] 
[2025-11-19 02:10:09] 2025-11-19 10:09:27,983 | INFO     | ***************************************
[2025-11-19 02:10:09] 2025-11-19 10:09:28,500 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-19 02:10:09] 2025-11-19 10:09:28,527 | INFO     | sufficient remaining disk space (1373714251776 B)
[2025-11-19 02:10:09] 2025-11-19 10:09:28,528 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 02:10:09] 2025-11-19 10:09:28,528 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 02:10:09] 2025-11-19 10:09:28,528 | INFO     | update_server=False
[2025-11-19 02:10:09] 2025-11-19 10:09:28,528 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 02:10:09] 2025-11-19 10:09:28,529 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 02:10:09] 2025-11-19 10:09:28,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 02:10:09] 2025-11-19 10:09:28,637 | INFO     | all job control threads have been joined
[2025-11-19 02:10:09] 2025-11-19 10:09:29,476 | INFO     | all data control threads have been joined
[2025-11-19 02:10:09] 2025-11-19 10:09:29,514 | INFO     | all payload control threads have been joined
[2025-11-19 02:10:09] 2025-11-19 10:09:29,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 02:10:09] 2025-11-19 10:09:29,515 | INFO     | aborting loop
[2025-11-19 02:10:09] 2025-11-19 10:09:29,534 | INFO     | [job] retrieve thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:29,535 | INFO     | [job] queue monitor thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:29,536 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:29,643 | INFO     | [job] control thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:29,818 | INFO     | [payload] failed_post thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:29,869 | INFO     | [payload] validate_post thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:30,088 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:30,118 | INFO     | [job] validate thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:30,389 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:30,482 | INFO     | [data] control thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:30,520 | INFO     | [payload] control thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:30,521 | INFO     | [job] job monitor thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:30,539 | INFO     | [data] copytool_out thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:30,643 | INFO     | [data] copytool_in thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:30,931 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:31,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 02:10:09] 2025-11-19 10:09:35,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 02:10:09] 2025-11-19 10:09:59,957 | INFO     | PID=306638 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-19 02:10:09] 2025-11-19 10:09:59,957 | INFO     | .. there are 19 such processes running
[2025-11-19 02:10:09] 2025-11-19 10:09:59,957 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 02:10:09] 2025-11-19 10:09:59,958 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 02:10:09] 2025-11-19 10:09:59,958 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 02:10:09] 2025-11-19 10:10:00,714 | INFO     | [monitor] cgroup control has ended
[2025-11-19 02:10:09] 2025-11-19 10:10:02,603 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140561489835840)>', '<ExcThread(monitor, started 140561084294912)>']
[2025-11-19 02:10:09] 2025-11-19 10:10:02,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 02:10:09] 2025-11-19 10:10:02,978 | INFO     | [monitor] control thread has ended
[2025-11-19 02:10:09] 2025-11-19 10:10:07,628 | INFO     | all workflow threads have been joined
[2025-11-19 02:10:09] 2025-11-19 10:10:07,628 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 02:10:09] 2025-11-19 10:10:07,629 | INFO     | traces error code: 0
[2025-11-19 02:10:09] 2025-11-19 10:10:07,629 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 02:10:09] 2025-11-19 10:10:08,775 [wrapper] ==== pilot stdout END ====
[2025-11-19 02:10:09] 2025-11-19 10:10:08,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 02:10:09] 2025-11-19 10:10:08,829 [wrapper] pilotpid: 306638
[2025-11-19 02:10:09] 2025-11-19 10:10:08,857 [wrapper] Pilot exit status: 0
[2025-11-19 02:10:09] 2025-11-19 10:10:08,976 [wrapper] pandaids: 6892526579
[2025-11-19 02:10:09] 2025-11-19 10:10:09,305 [wrapper] cleanup supervisor_pilot  306644 306639
[2025-11-19 02:10:09] 2025-11-19 10:10:09,335 [wrapper] Test setup, not cleaning
[2025-11-19 02:10:09] 2025-11-19 10:10:09,385 [wrapper] apfmon messages muted
[2025-11-19 02:10:09] 2025-11-19 10:10:09,407 [wrapper] ==== wrapper stdout END ====
[2025-11-19 02:10:09] 2025-11-19 10:10:09,459 [wrapper] ==== wrapper stderr END ====
[2025-11-19 02:10:09]  *** Error codes and diagnostics ***
[2025-11-19 02:10:09]     "exeErrorCode": 65,
[2025-11-19 02:10:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-19 02:10:09]     "pilotErrorCode": 1305,
[2025-11-19 02:10:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-19 02:10:09]  *** Listing of results directory ***
[2025-11-19 02:10:09] total 407768
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc    576529 Nov 18 23:00 pilot3.tar.gz
[2025-11-19 02:10:09] -rwx------. 1 boinc boinc     36292 Nov 18 23:07 runpilot2-wrapper.sh
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc      5112 Nov 18 23:07 queuedata.json
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc       100 Nov 19 01:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 02:10:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 01:56 run_atlas
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc       105 Nov 19 01:56 job.xml
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc      6444 Nov 19 01:56 init_data.xml
[2025-11-19 02:10:09] -rw-r--r--. 2 boinc boinc 413225320 Nov 19 01:56 EVNT.47493027._000110.pool.root.1
[2025-11-19 02:10:09] -rw-r--r--. 2 boinc boinc     15120 Nov 19 01:56 start_atlas.sh
[2025-11-19 02:10:09] drwxrwx--x. 2 boinc boinc      4096 Nov 19 01:56 shared
[2025-11-19 02:10:09] -rw-r--r--. 2 boinc boinc    590093 Nov 19 01:56 input.tar.gz
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc         0 Nov 19 01:56 boinc_lockfile
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc      2773 Nov 19 01:56 pandaJob.out
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc    989279 Nov 19 01:57 agis_schedconf.cvmfs.json
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc   1525063 Nov 19 01:57 agis_ddmendpoints.agis.ALL.json
[2025-11-19 02:10:09] drwx------. 5 boinc boinc      4096 Nov 19 01:58 pilot3
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc       525 Nov 19 02:06 boinc_task_state.xml
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc      1005 Nov 19 02:07 memory_monitor_summary.json
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc     54074 Nov 19 02:07 log.47493029._001052.job.log.tgz.1
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc        95 Nov 19 02:09 pilot_heartbeat.json
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc     10330 Nov 19 02:09 heartbeat.json
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc      8192 Nov 19 02:10 boinc_mmap_file
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc        23 Nov 19 02:10 wrapper_checkpoint.txt
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc      4822 Nov 19 02:10 pilotlog.txt
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc    148441 Nov 19 02:10 log.47493029._001052.job.log.1
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc       186 Nov 19 02:10 output.list
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc       620 Nov 19 02:10 runtime_log
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc    225280 Nov 19 02:10 result.tar.gz
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc      8526 Nov 19 02:10 runtime_log.err
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc       646 Nov 19 02:10 Q87NDmuSrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVsFKDmnPRfdm.diag
[2025-11-19 02:10:09] -rw-r--r--. 1 boinc boinc     22679 Nov 19 02:10 stderr.txt
[2025-11-19 02:10:09] No HITS result produced
[2025-11-19 02:10:09]  *** Contents of shared directory: ***
[2025-11-19 02:10:09] total 404364
[2025-11-19 02:10:09] -rw-r--r--. 2 boinc boinc 413225320 Nov 19 01:56 ATLAS.root_0
[2025-11-19 02:10:09] -rw-r--r--. 2 boinc boinc     15120 Nov 19 01:56 start_atlas.sh
[2025-11-19 02:10:09] -rw-r--r--. 2 boinc boinc    590093 Nov 19 01:56 input.tar.gz
[2025-11-19 02:10:09] -rw-------. 1 boinc boinc    225280 Nov 19 02:10 result.tar.gz
02:10:10 (302483): run_atlas exited; CPU time 75.789365
02:10:10 (302483): called boinc_finish(0)

</stderr_txt>
]]>

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