Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:07:02 (17551): wrapper (7.7.26015): starting
03:07:02 (17551): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 03:07:02] Arguments: --nthreads 8
[2025-11-22 03:07:02] Threads: 8
[2025-11-22 03:07:02] Checking for CVMFS
[2025-11-22 03:07:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 03:07:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 03:07:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 03:07:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 03:07:04] 2.11.2.0 30456 278823 141208 153154 3 128 13944587 25165825 4295 130560 3 118407376 99.867 77565912 3022 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 03:07:04] CVMFS is ok
[2025-11-22 03:07:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 03:07:04] Checking for apptainer binary...
[2025-11-22 03:07:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 03:07:04] Running /usr/bin/apptainer --version
[2025-11-22 03:07:04] apptainer version 1.3.2-1.el7
[2025-11-22 03:07:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 03:07:06] cg-vwn385.simple-grid.lan
[2025-11-22 03:07:06] apptainer works
[2025-11-22 03:07:06] Set ATHENA_PROC_NUMBER=8
[2025-11-22 03:07:06] Set ATHENA_CORE_NUMBER=8
[2025-11-22 03:07:06] Starting ATLAS job with PandaID=6892521677
[2025-11-22 03:07:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 04:57:16]  *** The last 200 lines of the pilot log: ***
[2025-11-23 04:57:16] 2025-11-23 03:56:26,519 | INFO     | time since job start (92883s) is within the limit (172800.0s)
[2025-11-23 04:57:16] 2025-11-23 03:56:26,974 | INFO     | monitor loop #6201: job 0:6892521677 is in state 'finished'
[2025-11-23 04:57:16] 2025-11-23 03:56:26,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 04:57:16] 2025-11-23 03:56:28,526 | INFO     | time since job start (92885s) is within the limit (172800.0s)
[2025-11-23 04:57:16] 2025-11-23 03:56:29,481 | INFO     | monitor loop #6202: job 0:6892521677 is in state 'finished'
[2025-11-23 04:57:16] 2025-11-23 03:56:29,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 04:57:16] 2025-11-23 03:56:30,535 | INFO     | time since job start (92887s) is within the limit (172800.0s)
[2025-11-23 04:57:16] 2025-11-23 03:56:31,988 | INFO     | monitor loop #6203: job 0:6892521677 is in state 'finished'
[2025-11-23 04:57:16] 2025-11-23 03:56:31,989 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 04:57:16] 2025-11-23 03:56:32,542 | INFO     | time since job start (92889s) is within the limit (172800.0s)
[2025-11-23 04:57:16] 2025-11-23 03:56:34,499 | INFO     | monitor loop #6204: job 0:6892521677 is in state 'finished'
[2025-11-23 04:57:16] 2025-11-23 03:56:34,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 04:57:16] 2025-11-23 03:56:34,551 | INFO     | time since job start (92891s) is within the limit (172800.0s)
[2025-11-23 04:57:16] 2025-11-23 03:56:35,722 | INFO     | PID=21684 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 04:57:16] 2025-11-23 03:56:35,723 | INFO     | .. there are 9 such processes running
[2025-11-23 04:57:16] 2025-11-23 03:56:36,230 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 04:57:16] 2025-11-23 03:56:36,231 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 04:57:16] 2025-11-23 03:56:36,232 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6892521677/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 04:57:16] 2025-11-23 03:56:36,233 | INFO     | extracted standard info from prmon json
[2025-11-23 04:57:16] 2025-11-23 03:56:36,233 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 04:57:16] 2025-11-23 03:56:36,233 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 04:57:16] 2025-11-23 03:56:36,296 | INFO     | fitting pss+swap vs Time
[2025-11-23 04:57:16] 2025-11-23 03:56:36,299 | INFO     | sum of square deviations: 1082516208342.0704
[2025-11-23 04:57:16] 2025-11-23 03:56:36,367 | INFO     | sum of deviations: 2779057378073.4766
[2025-11-23 04:57:16] 2025-11-23 03:56:36,367 | INFO     | mean x: 1763823819.343441
[2025-11-23 04:57:16] 2025-11-23 03:56:36,367 | INFO     | mean y: 2868478.0566908373
[2025-11-23 04:57:16] 2025-11-23 03:56:36,367 | INFO     | intersect: -4525255499.2049885
[2025-11-23 04:57:16] 2025-11-23 03:56:36,369 | INFO     | chi2: 15.763859295130613
[2025-11-23 04:57:16] 2025-11-23 03:56:36,372 | INFO     | sum of square deviations: 1071848201983.012
[2025-11-23 04:57:16] 2025-11-23 03:56:36,440 | INFO     | sum of deviations: 3277394871882.2476
[2025-11-23 04:57:16] 2025-11-23 03:56:36,440 | INFO     | mean x: 1763823666.8478837
[2025-11-23 04:57:16] 2025-11-23 03:56:36,440 | INFO     | mean y: 2875600.701058201
[2025-11-23 04:57:16] 2025-11-23 03:56:36,441 | INFO     | intersect: -5390375635.749135
[2025-11-23 04:57:16] 2025-11-23 03:56:36,442 | INFO     | chi2: 12.645232631543045
[2025-11-23 04:57:16] 2025-11-23 03:56:36,443 | INFO     | current chi2=12.645232631543045 (change=19.783395710407653 %)
[2025-11-23 04:57:16] 2025-11-23 03:56:36,443 | INFO     | right removable region: 1511
[2025-11-23 04:57:16] 2025-11-23 03:56:36,445 | INFO     | sum of square deviations: 1071846958803.0125
[2025-11-23 04:57:16] 2025-11-23 03:56:36,520 | INFO     | sum of deviations: 2239152331347.3696
[2025-11-23 04:57:16] 2025-11-23 03:56:36,520 | INFO     | mean x: 1763823971.8478837
[2025-11-23 04:57:16] 2025-11-23 03:56:36,520 | INFO     | mean y: 2876192.771164021
[2025-11-23 04:57:16] 2025-11-23 03:56:36,520 | INFO     | intersect: -3681857458.999557
[2025-11-23 04:57:16] 2025-11-23 03:56:36,522 | INFO     | chi2: 12.459582722739077
[2025-11-23 04:57:16] 2025-11-23 03:56:36,522 | INFO     | current chi2=12.459582722739077 (change=20.96108897275056 %)
[2025-11-23 04:57:16] 2025-11-23 03:56:36,522 | INFO     | left removable region: 10
[2025-11-23 04:57:16] 2025-11-23 03:56:36,525 | INFO     | sum of square deviations: 1048623784087.4427
[2025-11-23 04:57:16] 2025-11-23 03:56:36,592 | INFO     | sum of deviations: 2686678463989.752
[2025-11-23 04:57:16] 2025-11-23 03:56:36,592 | INFO     | mean x: 1763823941.3544304
[2025-11-23 04:57:16] 2025-11-23 03:56:36,593 | INFO     | mean y: 2887412.6395736174
[2025-11-23 04:57:16] 2025-11-23 03:56:36,593 | INFO     | intersect: -4516205010.607722
[2025-11-23 04:57:16] 2025-11-23 03:56:36,595 | INFO     | chi2: 8.214670560151394
[2025-11-23 04:57:16] 2025-11-23 03:56:36,595 | INFO     | current memory leak: 2.56 B/s (using 1501 data points, chi2=8.21)
[2025-11-23 04:57:16] 2025-11-23 03:56:36,597 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 04:57:16] 2025-11-23 03:56:36,597 | INFO     | ..............................
[2025-11-23 04:57:16] 2025-11-23 03:56:36,597 | INFO     | . Timing measurements:
[2025-11-23 04:57:16] 2025-11-23 03:56:36,598 | INFO     | . get job = 0 s
[2025-11-23 04:57:16] 2025-11-23 03:56:36,598 | INFO     | . initial setup = 7 s
[2025-11-23 04:57:16] 2025-11-23 03:56:36,598 | INFO     | . payload setup = 72 s
[2025-11-23 04:57:16] 2025-11-23 03:56:36,598 | INFO     | . stage-in = 0 s
[2025-11-23 04:57:16] 2025-11-23 03:56:36,598 | INFO     | . payload execution = 92634 s
[2025-11-23 04:57:16] 2025-11-23 03:56:36,598 | INFO     | . stage-out = 5 s
[2025-11-23 04:57:16] 2025-11-23 03:56:36,598 | INFO     | . log creation = 2 s
[2025-11-23 04:57:16] 2025-11-23 03:56:36,598 | INFO     | ..............................
[2025-11-23 04:57:16] 2025-11-23 03:56:36,745 | INFO     | time since job start (92893s) is within the limit (172800.0s)
[2025-11-23 04:57:16] 2025-11-23 03:56:37,162 | INFO     | 
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | job summary report
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | --------------------------------------------------
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | PanDA job id: 6892521677
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | task id: 47493029
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | errors: (none)
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | pilot state: finished 
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | transexitcode: 0
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | exeerrorcode: 0
[2025-11-23 04:57:16] 2025-11-23 03:56:37,163 | INFO     | exeerrordiag: 
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | exitcode: 0
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | exitmsg: OK
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | cpuconsumptiontime: 342861 s
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | nevents: 1000
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | neventsw: 0
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | pid: 28914
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | pgrp: 28914
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | corecount: 8
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | event service: False
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | sizes: {0: 2298614, 1: 2298813, 12: 2298813, 23: 2298841, 34: 2298869, 41: 2299159, 44: 2299315, 92710: 2363756, 92711: 2363755, 92717: 2372807, 92719: 2372863, 92
[2025-11-23 04:57:16] 2025-11-23 03:56:37,164 | INFO     | --------------------------------------------------
[2025-11-23 04:57:16] 2025-11-23 03:56:37,165 | INFO     | 
[2025-11-23 04:57:16] 2025-11-23 03:56:37,165 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-23 04:57:16] 2025-11-23 03:56:37,653 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,653 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,654 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,654 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,654 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,655 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,655 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,655 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,655 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,655 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,655 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 04:57:16] 2025-11-23 03:56:37,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,655 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 04:57:16] 2025-11-23 03:56:37,656 | INFO     | job 6892521677 has completed (purged errors)
[2025-11-23 04:57:16] 2025-11-23 03:56:37,656 | INFO     | overall cleanup function is called
[2025-11-23 04:57:16] 2025-11-23 03:56:38,673 | INFO     | --- collectZombieJob: --- 10, [28914]
[2025-11-23 04:57:16] 2025-11-23 03:56:38,674 | INFO     | zombie collector waiting for pid 28914
[2025-11-23 04:57:16] 2025-11-23 03:56:38,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 04:57:16] 2025-11-23 03:56:38,674 | INFO     | collected zombie processes
[2025-11-23 04:57:16] 2025-11-23 03:56:38,674 | INFO     | will attempt to kill all subprocesses of pid=28914
[2025-11-23 04:57:16] 2025-11-23 03:56:38,788 | INFO     | process IDs to be killed: [28914] (in reverse order)
[2025-11-23 04:57:16] 2025-11-23 03:56:38,953 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 04:57:16] 2025-11-23 03:56:38,954 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 04:57:16] 2025-11-23 03:56:38,958 | INFO     | did not find any defunct processes belonging to 28914
[2025-11-23 04:57:16] 2025-11-23 03:56:38,961 | INFO     | did not find any defunct processes belonging to 28914
[2025-11-23 04:57:16] 2025-11-23 03:56:38,964 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 04:57:16] 2025-11-23 03:56:38,964 | INFO     | ready for new job
[2025-11-23 04:57:16] 2025-11-23 03:56:38,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 04:57:16] 2025-11-23 03:56:38,971 | INFO     | ***************************************
[2025-11-23 04:57:16] 2025-11-23 03:56:38,971 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 04:57:16] 2025-11-23 03:56:38,972 | INFO     | ***************************************
[2025-11-23 04:57:16] 2025-11-23 03:56:38,972 | INFO     | 
[2025-11-23 04:57:16] 2025-11-23 03:56:38,972 | INFO     | pilot is running in a VM
[2025-11-23 04:57:16] 2025-11-23 03:56:38,973 | INFO     | architecture information:
[2025-11-23 04:57:16] 2025-11-23 03:56:38,973 | INFO     | executing command: cat /etc/os-release
[2025-11-23 04:57:16] 2025-11-23 03:56:39,038 | INFO     | cat /etc/os-release:
[2025-11-23 04:57:16] NAME="CentOS Linux"
[2025-11-23 04:57:16] VERSION="7 (Core)"
[2025-11-23 04:57:16] ID="centos"
[2025-11-23 04:57:16] ID_LIKE="rhel fedora"
[2025-11-23 04:57:16] VERSION_ID="7"
[2025-11-23 04:57:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 04:57:16] ANSI_COLOR="0;31"
[2025-11-23 04:57:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 04:57:16] HOME_URL="https://www.centos.org/"
[2025-11-23 04:57:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 04:57:16] 
[2025-11-23 04:57:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 04:57:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 04:57:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 04:57:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 04:57:16] 
[2025-11-23 04:57:16] 2025-11-23 03:56:39,038 | INFO     | ***************************************
[2025-11-23 04:57:16] 2025-11-23 03:56:39,542 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-23 04:57:16] 2025-11-23 03:56:39,863 | INFO     | sufficient remaining disk space (493044629504 B)
[2025-11-23 04:57:16] 2025-11-23 03:56:39,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 04:57:16] 2025-11-23 03:56:39,863 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 04:57:16] 2025-11-23 03:56:39,864 | INFO     | update_server=False
[2025-11-23 04:57:16] 2025-11-23 03:56:39,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 04:57:16] 2025-11-23 03:56:39,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 04:57:16] 2025-11-23 03:56:40,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 04:57:16] 2025-11-23 03:56:40,519 | INFO     | aborting loop
[2025-11-23 04:57:16] 2025-11-23 03:56:40,641 | INFO     | all payload control threads have been joined
[2025-11-23 04:57:16] 2025-11-23 03:56:40,775 | INFO     | all data control threads have been joined
[2025-11-23 04:57:16] 2025-11-23 03:56:40,870 | INFO     | [job] retrieve thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,069 | INFO     | all job control threads have been joined
[2025-11-23 04:57:16] 2025-11-23 03:56:41,151 | INFO     | [payload] validate_post thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,516 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,524 | INFO     | [job] job monitor thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,558 | INFO     | [job] validate thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,627 | INFO     | [data] copytool_in thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,647 | INFO     | [payload] control thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,771 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 04:57:16] 2025-11-23 03:56:41,781 | INFO     | [data] control thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,872 | INFO     | [data] copytool_out thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,924 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:41,973 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 04:57:16] 2025-11-23 03:56:42,075 | INFO     | [job] control thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:42,093 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:42,103 | INFO     | [payload] failed_post thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:42,777 | INFO     | [job] queue monitor thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:56:45,982 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 04:57:16] 2025-11-23 03:57:06,063 | INFO     | [monitor] cgroup control has ended
[2025-11-23 04:57:16] 2025-11-23 03:57:08,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140044010993472)>', '<ExcThread(monitor, started 140043549128448)>']
[2025-11-23 04:57:16] 2025-11-23 03:57:09,929 | INFO     | PID=21684 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 04:57:16] 2025-11-23 03:57:09,929 | INFO     | .. there are 9 such processes running
[2025-11-23 04:57:16] 2025-11-23 03:57:09,929 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 04:57:16] 2025-11-23 03:57:09,930 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 04:57:16] 2025-11-23 03:57:09,930 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 04:57:16] 2025-11-23 03:57:09,930 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 04:57:16] 2025-11-23 03:57:09,930 | INFO     | [monitor] control thread has ended
[2025-11-23 04:57:16] 2025-11-23 03:57:13,030 | INFO     | all workflow threads have been joined
[2025-11-23 04:57:16] 2025-11-23 03:57:13,031 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 04:57:16] 2025-11-23 03:57:13,031 | INFO     | traces error code: 0
[2025-11-23 04:57:16] 2025-11-23 03:57:13,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 04:57:16] 2025-11-23 03:57:13,373 [wrapper] ==== pilot stdout END ====
[2025-11-23 04:57:16] 2025-11-23 03:57:13,446 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 04:57:16] 2025-11-23 03:57:13,548 [wrapper] pilotpid: 21684
[2025-11-23 04:57:16] 2025-11-23 03:57:13,609 [wrapper] Pilot exit status: 0
[2025-11-23 04:57:16] 2025-11-23 03:57:14,037 [wrapper] pandaids: 6892521677
[2025-11-23 04:57:16] 2025-11-23 03:57:14,823 [wrapper] cleanup supervisor_pilot 12041 21685
[2025-11-23 04:57:16] 2025-11-23 03:57:14,955 [wrapper] Test setup, not cleaning
[2025-11-23 04:57:16] 2025-11-23 03:57:15,062 [wrapper] apfmon messages muted
[2025-11-23 04:57:16] 2025-11-23 03:57:15,151 [wrapper] ==== wrapper stdout END ====
[2025-11-23 04:57:16] 2025-11-23 03:57:15,285 [wrapper] ==== wrapper stderr END ====
[2025-11-23 04:57:16]  *** Error codes and diagnostics ***
[2025-11-23 04:57:16]     "exeErrorCode": 0,
[2025-11-23 04:57:16]     "exeErrorDiag": "",
[2025-11-23 04:57:16]     "pilotErrorCode": 0,
[2025-11-23 04:57:16]     "pilotErrorDiag": "",
[2025-11-23 04:57:16]  *** Listing of results directory ***
[2025-11-23 04:57:16] total 1343092
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-23 04:57:16] -rwx------. 1 boinc boinc     36292 Nov 19 08:02 runpilot2-wrapper.sh
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:02 queuedata.json
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc       100 Nov 22 03:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 04:57:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 03:07 run_atlas
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc       105 Nov 22 03:07 job.xml
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc      6392 Nov 22 03:07 init_data.xml
[2025-11-23 04:57:16] -rw-r--r--. 2 boinc boinc 409562054 Nov 22 03:07 EVNT.47493027._000001.pool.root.1
[2025-11-23 04:57:16] -rw-r--r--. 2 boinc boinc     15120 Nov 22 03:07 start_atlas.sh
[2025-11-23 04:57:16] drwxrwx--x. 2 boinc boinc        68 Nov 22 03:07 shared
[2025-11-23 04:57:16] -rw-r--r--. 2 boinc boinc    590087 Nov 22 03:07 input.tar.gz
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc         0 Nov 22 03:07 boinc_lockfile
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc      2767 Nov 22 03:07 pandaJob.out
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc    989798 Nov 22 03:08 agis_schedconf.cvmfs.json
[2025-11-23 04:57:16] drwx------. 5 boinc boinc      4096 Nov 22 03:08 pilot3
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc       533 Nov 23 04:31 boinc_task_state.xml
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc 931972895 Nov 23 04:53 HITS.47493029._000004.pool.root.1
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc      1029 Nov 23 04:54 memory_monitor_summary.json
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc   1526164 Nov 23 04:55 agis_ddmendpoints.agis.ALL.json
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc   2572080 Nov 23 04:55 log.47493029._000004.job.log.tgz.1
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc        95 Nov 23 04:56 pilot_heartbeat.json
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc      8619 Nov 23 04:56 heartbeat.json
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc      4885 Nov 23 04:57 pilotlog.txt
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc  12366533 Nov 23 04:57 log.47493029._000004.job.log.1
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc      8192 Nov 23 04:57 boinc_mmap_file
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc       353 Nov 23 04:57 output.list
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc       620 Nov 23 04:57 runtime_log
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc  14960640 Nov 23 04:57 result.tar.gz
[2025-11-23 04:57:16] -rw-------. 1 boinc boinc       662 Nov 23 04:57 UypMDmCOrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEoFKDmmrLtJn.diag
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc      8717 Nov 23 04:57 runtime_log.err
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc        29 Nov 23 04:57 wrapper_checkpoint.txt
[2025-11-23 04:57:16] -rw-r--r--. 1 boinc boinc     21512 Nov 23 04:57 stderr.txt
[2025-11-23 04:57:17] HITS file was successfully produced:
[2025-11-23 04:57:17] -rw-------. 1 boinc boinc 931972895 Nov 23 04:53 shared/HITS.pool.root.1
[2025-11-23 04:57:17]  *** Contents of shared directory: ***
[2025-11-23 04:57:17] total 1325304
[2025-11-23 04:57:17] -rw-r--r--. 2 boinc boinc 409562054 Nov 22 03:07 ATLAS.root_0
[2025-11-23 04:57:17] -rw-r--r--. 2 boinc boinc     15120 Nov 22 03:07 start_atlas.sh
[2025-11-23 04:57:17] -rw-r--r--. 2 boinc boinc    590087 Nov 22 03:07 input.tar.gz
[2025-11-23 04:57:17] -rw-------. 1 boinc boinc 931972895 Nov 23 04:53 HITS.pool.root.1
[2025-11-23 04:57:17] -rw-------. 1 boinc boinc  14960640 Nov 23 04:57 result.tar.gz
04:57:18 (17551): run_atlas exited; CPU time 343412.717532
04:57:18 (17551): called boinc_finish(0)

</stderr_txt>
]]>

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