Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-21 06:21:35 (27552): vboxwrapper version 26210
2025-11-21 06:21:35 (27552): BOINC client version: 8.2.4
2025-11-21 06:21:35 (27552): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-11-21 06:21:35 (27552): Successfully copied 'init_data.xml' to the shared directory.
2025-11-21 06:21:36 (27552): Create VM. (boinc_3944d699a1d9290d, slot#1)
2025-11-21 06:21:36 (27552): Setting Memory Size for VM. (4800MB)
2025-11-21 06:21:36 (27552): Setting CPU Count for VM. (8)
2025-11-21 06:21:37 (27552): Setting Chipset Options for VM.
2025-11-21 06:21:37 (27552): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-21 06:21:37 (27552): Setting Boot Options for VM.
2025-11-21 06:21:38 (27552): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-21 06:21:38 (27552): Enabling VM Network Access.
2025-11-21 06:21:38 (27552): Disabling USB Support for VM.
2025-11-21 06:21:38 (27552): Disabling COM Port Support for VM.
2025-11-21 06:21:39 (27552): Disabling LPT Port Support for VM.
2025-11-21 06:21:39 (27552): Disabling Audio Support for VM.
2025-11-21 06:21:39 (27552): Disabling Clipboard Support for VM.
2025-11-21 06:21:39 (27552): Disabling Drag and Drop Support for VM.
2025-11-21 06:21:40 (27552): Adding storage controller(s) to VM.
2025-11-21 06:21:40 (27552): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-21 06:21:41 (27552): Adding VirtualBox Guest Additions to VM.
2025-11-21 06:21:41 (27552): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-21 06:21:41 (27552): forwarding host port 64073 to guest port 80
2025-11-21 06:21:41 (27552): Enabling remote desktop for VM.
2025-11-21 06:21:42 (27552): Enabling shared directory for VM.
2025-11-21 06:21:43 (27552): Starting VM using VBoxManage interface. (boinc_3944d699a1d9290d, slot#1)
2025-11-21 06:21:48 (27552): Successfully started VM. (PID = '12076')
2025-11-21 06:21:48 (27552): Reporting VM Process ID to BOINC.
2025-11-21 06:21:48 (27552): Guest Log: BIOS: VirtualBox 7.1.4
2025-11-21 06:21:48 (27552): Guest Log: CPUID EDX: 0x178bfbff
2025-11-21 06:21:48 (27552): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-21 06:21:48 (27552): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-21 06:21:48 (27552): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-21 06:21:48 (27552): Detected: Web Application Enabled (http://localhost:64073)
2025-11-21 06:21:48 (27552): Detected: Remote Desktop Enabled (localhost:64082)
2025-11-21 06:21:48 (27552): Preference change detected
2025-11-21 06:21:48 (27552): Setting CPU throttle for VM. (100%)
2025-11-21 06:21:48 (27552): Setting network throttle for VM. (1024KB)
2025-11-21 06:21:49 (27552): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-21 06:21:50 (27552): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-21 06:21:50 (27552): Guest Log: BIOS: Booting from Hard Disk...
2025-11-21 06:21:53 (27552): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-21 06:21:53 (27552): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-21 06:21:53 (27552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-21 06:22:00 (27552): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-21 06:22:00 (27552): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-21 06:22:05 (27552): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-21 06:22:05 (27552): Guest Log: 00:00:00.000158 main     Log opened 2025-11-21T06:22:03.587792000Z
2025-11-21 06:22:05 (27552): Guest Log: 00:00:00.000267 main     OS Product: Linux
2025-11-21 06:22:05 (27552): Guest Log: 00:00:00.000295 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-21 06:22:05 (27552): Guest Log: 00:00:00.000318 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-21 06:22:05 (27552): Guest Log: 00:00:00.000340 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-21 06:22:05 (27552): Guest Log: 00:00:00.000341 main     Process ID: 1395
2025-11-21 06:22:05 (27552): Guest Log: 00:00:00.000341 main     Package type: LINUX_64BITS_GENERIC
2025-11-21 06:22:05 (27552): Guest Log: 00:00:00.001707 main     5.2.32 r132073 started. Verbose level = 0
2025-11-21 06:22:06 (27552): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-21 06:22:06 (27552): Guest Log: [INFO] Mounting shared directory
2025-11-21 06:22:06 (27552): Guest Log: [INFO] Checking for init_data.xml
2025-11-21 06:22:10 (27552): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-21 06:22:10 (27552): Guest Log: [INFO] Detected branch: prod
2025-11-21 06:22:10 (27552): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-21 06:22:10 (27552): Guest Log: Copying input files
2025-11-21 06:22:12 (27552): Guest Log: Copied input files into RunAtlas.
2025-11-21 06:22:12 (27552): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.3:3128 - will set in /etc/cvmfs/default.local
2025-11-21 06:22:15 (27552): Guest Log: 00:00:10.003978 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 888 268 000ns (GuestNow=1 763 724 135 478 914 000 ns GuestLast=1 763 706 123 590 646 000 ns fSetTimeLastLoop=true )
2025-11-21 06:22:21 (27552): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-21 06:22:21 (27552): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-21 06:22:21 (27552): Guest Log: 2.6.3.0 1678 0 31620 153124 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.3:3128 1
2025-11-21 06:22:21 (27552): Guest Log: copied the webapp to /var/www
2025-11-21 06:22:21 (27552): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-21 06:22:21 (27552): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-21 06:22:22 (27552): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-21 06:22:22 (27552): Guest Log:  *** Starting ATLAS job. (PandaID=6891571623 taskID=47493068) ***
2025-11-21 08:01:51 (27552): Status Report: Elapsed Time: '6000.000000'
2025-11-21 08:01:51 (27552): Status Report: CPU Time: '45263.046875'
2025-11-21 09:41:54 (27552): Status Report: Elapsed Time: '12000.000000'
2025-11-21 09:41:54 (27552): Status Report: CPU Time: '92819.843750'
2025-11-21 11:21:57 (27552): Status Report: Elapsed Time: '18000.000000'
2025-11-21 11:21:57 (27552): Status Report: CPU Time: '140393.187500'
2025-11-21 13:02:00 (27552): Status Report: Elapsed Time: '24000.000000'
2025-11-21 13:02:00 (27552): Status Report: CPU Time: '186981.578125'
2025-11-21 13:07:37 (27552): Guest Log:  *** Job finished ***
2025-11-21 13:07:37 (27552): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:06:54,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:06:54,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:19,076 | INFO     | [monitor] cgroup control has ended
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:20,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470245799744)>', '<ExcThread(monitor, started 140469497480960)>']
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:21,296 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:21,296 | INFO     | [monitor] control thread has ended
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,749 | INFO     | all workflow threads have been joined
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,749 | INFO     | end of generic workflow (traces error code: 0)
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,749 | INFO     | traces error code: 0
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,853 [wrapper] ==== pilot stdout END ====
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,860 [wrapper] ==== wrapper stdout RESUME ====
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,867 [wrapper] pilotpid: 6099
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,875 [wrapper] Pilot exit status: 0
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,900 [wrapper] pandaids: 6891571623
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,943 [wrapper] cleanup supervisor_pilot 30998 6100
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,951 [wrapper] Test setup, not cleaning
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,959 [wrapper] apfmon messages muted
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,965 [wrapper] ==== wrapper stdout END ====
2025-11-21 13:07:37 (27552): Guest Log: 2025-11-21 18:07:25,973 [wrapper] ==== wrapper stderr END ====
2025-11-21 13:07:37 (27552): Guest Log:  *** Error codes and diagnostics ***
2025-11-21 13:07:37 (27552): Guest Log:     "exeErrorCode": 0,
2025-11-21 13:07:37 (27552): Guest Log:     "exeErrorDiag": "",
2025-11-21 13:07:37 (27552): Guest Log:     "pilotErrorCode": 0,
2025-11-21 13:07:37 (27552): Guest Log:     "pilotErrorDiag": "",
2025-11-21 13:07:37 (27552): Guest Log:  *** Listing of results directory ***
2025-11-21 13:07:37 (27552): Guest Log: total 907560
2025-11-21 13:07:37 (27552): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:47 pilot3.tar.gz
2025-11-21 13:07:37 (27552): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 15:54 queuedata.json
2025-11-21 13:07:37 (27552): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 15:56 runpilot2-wrapper.sh
2025-11-21 13:07:37 (27552): Guest Log: -rwxr-xr-x. 1 atlas atlas      9296 Nov 21 11:22 init_data.xml
2025-11-21 13:07:37 (27552): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 21 11:22 start_atlas.sh
2025-11-21 13:07:37 (27552): Guest Log: -rwxr-xr-x. 1 atlas atlas    590100 Nov 21 11:22 input.tar.gz
2025-11-21 13:07:37 (27552): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 21 11:22 EVNT.47493065._000291.pool.root.1 -> /data/./ATLAS.root_0
2025-11-21 13:07:37 (27552): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 21 11:22 pandaJob.out
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas    989817 Nov 21 11:22 agis_schedconf.cvmfs.json
2025-11-21 13:07:37 (27552): Guest Log: drwx------. 5 atlas atlas      4096 Nov 21 11:22 pilot3
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas 915680858 Nov 21 18:05 HITS.47493068._002906.pool.root.1
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas      1050 Nov 21 18:06 memory_monitor_summary.json
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 21 18:06 agis_ddmendpoints.agis.ALL.json
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas   1696822 Nov 21 18:06 log.47493068._002906.job.log.tgz.1
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas      8637 Nov 21 18:06 heartbeat.json
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas        95 Nov 21 18:06 pilot_heartbeat.json
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 21 18:07 pilotlog.txt
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas   3205344 Nov 21 18:07 log.47493068._002906.job.log.1
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas       353 Nov 21 18:07 output.list
2025-11-21 13:07:37 (27552): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 21 18:07 runtime_log
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas   4925440 Nov 21 18:07 result.tar.gz
2025-11-21 13:07:37 (27552): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Nov 21 18:07 runtime_log.err
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas       663 Nov 21 18:07 HbRNDmVFdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKiFKDmItvkZn.diag
2025-11-21 13:07:37 (27552): Guest Log: Looking for outputfile HITS.47493068._002906.pool.root.1
2025-11-21 13:07:37 (27552): Guest Log: HITS file was successfully produced
2025-11-21 13:07:37 (27552): Guest Log: -rw-------. 1 atlas atlas 915680858 Nov 21 18:05 /home/atlas/RunAtlas/HITS.47493068._002906.pool.root.1
2025-11-21 13:07:41 (27552): Guest Log: Successfully finished the ATLAS job!
2025-11-21 13:07:41 (27552): Guest Log: Copying the results back to the shared directory!
2025-11-21 13:07:41 (27552): Guest Log:  *** Contents of shared directory: ***
2025-11-21 13:07:41 (27552): Guest Log: total 1299188
2025-11-21 13:07:41 (27552): Guest Log: -rwxrwxrwx. 1 root root 409134933 Nov 21 11:21 ATLAS.root_0
2025-11-21 13:07:41 (27552): Guest Log: -rwxrwxrwx. 1 root root 915680858 Nov 21  2025 HITS.pool.root.1
2025-11-21 13:07:41 (27552): Guest Log: -rwxrwxrwx. 1 root root      9296 Nov 21 11:21 init_data.xml
2025-11-21 13:07:41 (27552): Guest Log: -rwxrwxrwx. 1 root root    590100 Nov 19 09:40 input.tar.gz
2025-11-21 13:07:41 (27552): Guest Log: -rwxrwxrwx. 1 root root   4925440 Nov 21  2025 result.tar.gz
2025-11-21 13:07:41 (27552): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 09:40 start_atlas.sh
2025-11-21 13:07:41 (27552): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-21 13:07:41 (27552): VM Completion File Detected.
2025-11-21 13:07:41 (27552): Powering off VM.
2025-11-21 13:07:41 (27552): Successfully stopped VM.
2025-11-21 13:07:41 (27552): Deregistering VM. (boinc_3944d699a1d9290d, slot#1)
2025-11-21 13:07:41 (27552): Removing network bandwidth throttle group from VM.
2025-11-21 13:07:42 (27552): Removing VM from VirtualBox.
2025-11-21 13:07:47 (27552): called boinc_finish(0)

</stderr_txt>
]]>

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