Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-20 23:38:47 (58876): vboxwrapper version 26210
2025-11-20 23:38:47 (58876): BOINC client version: 8.0.2
2025-11-20 23:38:48 (58876): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-20 23:38:48 (58876): Successfully copied 'init_data.xml' to the shared directory.
2025-11-20 23:38:48 (58876): Create VM. (boinc_17caea124e2026d8, slot#2)
2025-11-20 23:38:49 (58876): Setting Memory Size for VM. (4800MB)
2025-11-20 23:38:49 (58876): Setting CPU Count for VM. (8)
2025-11-20 23:38:49 (58876): Setting Chipset Options for VM.
2025-11-20 23:38:49 (58876): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-20 23:38:50 (58876): Setting Boot Options for VM.
2025-11-20 23:38:50 (58876): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-20 23:38:50 (58876): Enabling VM Network Access.
2025-11-20 23:38:51 (58876): Disabling USB Support for VM.
2025-11-20 23:38:51 (58876): Disabling COM Port Support for VM.
2025-11-20 23:38:51 (58876): Disabling LPT Port Support for VM.
2025-11-20 23:38:52 (58876): Disabling Audio Support for VM.
2025-11-20 23:38:52 (58876): Disabling Clipboard Support for VM.
2025-11-20 23:38:52 (58876): Disabling Drag and Drop Support for VM.
2025-11-20 23:38:52 (58876): Adding storage controller(s) to VM.
2025-11-20 23:38:53 (58876): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-20 23:38:53 (58876): Adding VirtualBox Guest Additions to VM.
2025-11-20 23:38:53 (58876): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-20 23:38:54 (58876): forwarding host port 59102 to guest port 80
2025-11-20 23:38:54 (58876): Enabling remote desktop for VM.
2025-11-20 23:38:54 (58876): Required extension pack not installed, remote desktop not enabled.
2025-11-20 23:38:54 (58876): Enabling shared directory for VM.
2025-11-20 23:38:55 (58876): Starting VM using VBoxManage interface. (boinc_17caea124e2026d8, slot#2)
2025-11-20 23:39:00 (58876): Successfully started VM. (PID = '37868')
2025-11-20 23:39:00 (58876): Reporting VM Process ID to BOINC.
2025-11-20 23:39:00 (58876): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-20 23:39:00 (58876): Guest Log: CPUID EDX: 0x178bfbff
2025-11-20 23:39:00 (58876): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-20 23:39:00 (58876): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-20 23:39:00 (58876): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-20 23:39:00 (58876): Detected: Web Application Enabled (http://localhost:59102)
2025-11-20 23:39:00 (58876): Preference change detected
2025-11-20 23:39:00 (58876): Setting CPU throttle for VM. (50%)
2025-11-20 23:39:00 (58876): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-20 23:39:02 (58876): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-20 23:39:02 (58876): Guest Log: BIOS: Booting from Hard Disk...
2025-11-20 23:39:05 (58876): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-20 23:39:05 (58876): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-20 23:39:05 (58876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-20 23:39:06 (58876): VM state change detected. (old = 'running', new = 'paused')
2025-11-20 23:39:26 (58876): VM state change detected. (old = 'paused', new = 'running')
2025-11-20 23:39:30 (58876): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-20 23:39:30 (58876): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-20 23:39:34 (58876): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-20 23:39:34 (58876): Guest Log: 00:00:00.000058 main     Log opened 2025-11-20T23:39:12.751541000Z
2025-11-20 23:39:34 (58876): Guest Log: 00:00:00.000114 main     OS Product: Linux
2025-11-20 23:39:34 (58876): Guest Log: 00:00:00.000127 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-20 23:39:34 (58876): Guest Log: 00:00:00.000137 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-20 23:39:34 (58876): Guest Log: 00:00:00.000147 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-20 23:39:34 (58876): Guest Log: 00:00:00.000148 main     Process ID: 1368
2025-11-20 23:39:34 (58876): Guest Log: 00:00:00.000148 main     Package type: LINUX_64BITS_GENERIC
2025-11-20 23:39:34 (58876): Guest Log: 00:00:00.000587 main     5.2.32 r132073 started. Verbose level = 0
2025-11-20 23:39:34 (58876): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-20 23:39:34 (58876): Guest Log: [INFO] Mounting shared directory
2025-11-20 23:39:34 (58876): Guest Log: [INFO] Checking for init_data.xml
2025-11-20 23:39:44 (58876): Guest Log: 00:00:10.023464 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 031 259 757 000ns (GuestNow=1 763 699 984 012 340 000 ns GuestLast=1 763 681 952 752 583 000 ns fSetTimeLastLoop=true )
2025-11-20 23:40:38 (58876): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-20 23:40:38 (58876): Guest Log: [INFO] Detected branch: prod
2025-11-20 23:40:38 (58876): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-20 23:40:38 (58876): Guest Log: Copying input files
2025-11-20 23:40:39 (58876): Guest Log: Copied input files into RunAtlas.
2025-11-20 23:40:39 (58876): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-20 23:40:39 (58876): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-20 23:40:39 (58876): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-20 23:40:39 (58876): Guest Log: Further information can be found at the LHC@home message board.
2025-11-20 23:40:47 (58876): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-20 23:40:47 (58876): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-20 23:40:47 (58876): Guest Log: 2.6.3.0 1675 0 30124 153108 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-20 23:40:48 (58876): Guest Log: copied the webapp to /var/www
2025-11-20 23:40:48 (58876): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-20 23:40:48 (58876): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-20 23:40:48 (58876): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-20 23:40:48 (58876): Guest Log:  *** Starting ATLAS job. (PandaID=6892537104 taskID=47493029) ***
2025-11-20 23:56:25 (58876): Guest Log:  *** Job finished ***
2025-11-20 23:56:25 (58876): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:55:50,803 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:03,512 [wrapper] supervise_pilot (15 min periods counter: 2)
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:15,653 | INFO     | [monitor] cgroup control has ended
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:15,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438246668096)>', '<ExcThread(monitor, started 140437402658560)>']
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:16,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:16,341 | INFO     | [monitor] control thread has ended
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,883 | INFO     | all workflow threads have been joined
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,883 | INFO     | end of generic workflow (traces error code: 0)
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,883 | INFO     | traces error code: 0
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,926 [wrapper] ==== pilot stdout END ====
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,928 [wrapper] ==== wrapper stdout RESUME ====
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,932 [wrapper] pilotpid: 6101
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,934 [wrapper] Pilot exit status: 0
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,950 [wrapper] pandaids: 6892537104
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,969 [wrapper] cleanup supervisor_pilot 21976 6102
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,971 [wrapper] Test setup, not cleaning
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,973 [wrapper] apfmon messages muted
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,975 [wrapper] ==== wrapper stdout END ====
2025-11-20 23:56:25 (58876): Guest Log: 2025-11-21 04:56:20,977 [wrapper] ==== wrapper stderr END ====
2025-11-20 23:56:25 (58876): Guest Log:  *** Error codes and diagnostics ***
2025-11-20 23:56:25 (58876): Guest Log:     "exeErrorCode": 65,
2025-11-20 23:56:25 (58876): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 2; Run: 284500; Evt: 72051010; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2025-11-20 23:56:25 (58876): Guest Log:     "pilotErrorCode": 1305,
2025-11-20 23:56:25 (58876): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 2; Run: 284500; Evt: 72051010; Current algorith",
2025-11-20 23:56:25 (58876): Guest Log:  *** Listing of results directory ***
2025-11-20 23:56:25 (58876): Guest Log: total 5140
2025-11-20 23:56:25 (58876): Guest Log: -rw-r--r--. 1 atlas atlas  576529 Nov 19 07:27 pilot3.tar.gz
2025-11-20 23:56:25 (58876): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Nov 19 07:30 queuedata.json
2025-11-20 23:56:25 (58876): Guest Log: -rwx------. 1 atlas atlas   36292 Nov 19 07:30 runpilot2-wrapper.sh
2025-11-20 23:56:25 (58876): Guest Log: -rwxr-xr-x. 1 atlas atlas    9004 Nov 21 04:40 init_data.xml
2025-11-20 23:56:25 (58876): Guest Log: -rwxr-xr-x. 1 atlas atlas  590095 Nov 21 04:40 input.tar.gz
2025-11-20 23:56:25 (58876): Guest Log: -rwxr-xr-x. 1 atlas atlas   15120 Nov 21 04:40 start_atlas.sh
2025-11-20 23:56:25 (58876): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov 21 04:40 EVNT.47493027._000206.pool.root.1 -> /data/./ATLAS.root_0
2025-11-20 23:56:25 (58876): Guest Log: -rw-r--r--. 1 atlas atlas    2773 Nov 21 04:40 pandaJob.out
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas  989817 Nov 21 04:41 agis_schedconf.cvmfs.json
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas 1526164 Nov 21 04:41 agis_ddmendpoints.agis.ALL.json
2025-11-20 23:56:25 (58876): Guest Log: drwx------. 5 atlas atlas    4096 Nov 21 04:41 pilot3
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas    1022 Nov 21 04:53 memory_monitor_summary.json
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas  529842 Nov 21 04:53 log.47493029._002012.job.log.tgz.1
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas    9639 Nov 21 04:55 heartbeat.json
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas      95 Nov 21 04:55 pilot_heartbeat.json
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas    4805 Nov 21 04:56 pilotlog.txt
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas  174299 Nov 21 04:56 log.47493029._002012.job.log.1
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas     186 Nov 21 04:56 output.list
2025-11-20 23:56:25 (58876): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov 21 04:56 runtime_log
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas  727040 Nov 21 04:56 result.tar.gz
2025-11-20 23:56:25 (58876): Guest Log: -rw-r--r--. 1 atlas atlas    8477 Nov 21 04:56 runtime_log.err
2025-11-20 23:56:25 (58876): Guest Log: -rw-------. 1 atlas atlas     643 Nov 21 04:56 AMAMDmOprf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmd1FKDmRXBo3m.diag
2025-11-20 23:56:25 (58876): Guest Log: Looking for outputfile HITS.47493029._002012.pool.root.1
2025-11-20 23:56:25 (58876): Guest Log: No HITS file was produced
2025-11-20 23:56:25 (58876): Guest Log: Successfully finished the ATLAS job!
2025-11-20 23:56:25 (58876): Guest Log: Copying the results back to the shared directory!
2025-11-20 23:56:25 (58876): Guest Log:  *** Contents of shared directory: ***
2025-11-20 23:56:25 (58876): Guest Log: total 400384
2025-11-20 23:56:25 (58876): Guest Log: -rwxrwxrwx. 1 root root 408640484 Nov 21 04:38 ATLAS.root_0
2025-11-20 23:56:25 (58876): Guest Log: -rwxrwxrwx. 1 root root      9004 Nov 21 04:38 init_data.xml
2025-11-20 23:56:25 (58876): Guest Log: -rwxrwxrwx. 1 root root    590095 Nov 19 09:15 input.tar.gz
2025-11-20 23:56:25 (58876): Guest Log: -rwxrwxrwx. 1 root root    727040 Nov 21 04:56 result.tar.gz
2025-11-20 23:56:25 (58876): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 09:15 start_atlas.sh
2025-11-20 23:56:25 (58876): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-20 23:56:25 (58876): VM Completion File Detected.
2025-11-20 23:56:25 (58876): Powering off VM.
2025-11-20 23:56:25 (58876): Successfully stopped VM.
2025-11-20 23:56:25 (58876): Deregistering VM. (boinc_17caea124e2026d8, slot#2)
2025-11-20 23:56:25 (58876): Removing network bandwidth throttle group from VM.
2025-11-20 23:56:25 (58876): Removing VM from VirtualBox.
2025-11-20 23:56:31 (58876): called boinc_finish(0)

</stderr_txt>
]]>

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