Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-21 09:54:45 (10552): vboxwrapper version 26210
2025-11-21 09:54:45 (10552): BOINC client version: 8.0.2
2025-11-21 09:54:46 (10552): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2025-11-21 09:54:46 (10552): Successfully copied 'init_data.xml' to the shared directory.
2025-11-21 09:54:47 (10552): Create VM. (boinc_62e9e40f8069250f, slot#1)
2025-11-21 09:54:47 (10552): Setting Memory Size for VM. (4800MB)
2025-11-21 09:54:47 (10552): Setting CPU Count for VM. (8)
2025-11-21 09:54:48 (10552): Setting Chipset Options for VM.
2025-11-21 09:54:48 (10552): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-21 09:54:48 (10552): Setting Boot Options for VM.
2025-11-21 09:54:49 (10552): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-21 09:54:49 (10552): Enabling VM Network Access.
2025-11-21 09:54:49 (10552): Disabling USB Support for VM.
2025-11-21 09:54:50 (10552): Disabling COM Port Support for VM.
2025-11-21 09:54:50 (10552): Disabling LPT Port Support for VM.
2025-11-21 09:54:50 (10552): Disabling Audio Support for VM.
2025-11-21 09:54:50 (10552): Disabling Clipboard Support for VM.
2025-11-21 09:54:51 (10552): Disabling Drag and Drop Support for VM.
2025-11-21 09:54:51 (10552): Adding storage controller(s) to VM.
2025-11-21 09:54:51 (10552): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-21 09:54:53 (10552): Adding VirtualBox Guest Additions to VM.
2025-11-21 09:54:54 (10552): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-21 09:54:54 (10552): forwarding host port 54447 to guest port 80
2025-11-21 09:54:54 (10552): Enabling remote desktop for VM.
2025-11-21 09:54:54 (10552): Required extension pack not installed, remote desktop not enabled.
2025-11-21 09:54:54 (10552): Enabling shared directory for VM.
2025-11-21 09:54:55 (10552): Starting VM using VBoxManage interface. (boinc_62e9e40f8069250f, slot#1)
2025-11-21 09:55:00 (10552): Successfully started VM. (PID = '2288')
2025-11-21 09:55:00 (10552): Reporting VM Process ID to BOINC.
2025-11-21 09:55:00 (10552): Guest Log: BIOS: VirtualBox 7.1.0
2025-11-21 09:55:00 (10552): Guest Log: CPUID EDX: 0x178bfbff
2025-11-21 09:55:00 (10552): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-21 09:55:00 (10552): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-21 09:55:00 (10552): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-21 09:55:00 (10552): Detected: Web Application Enabled (http://localhost:54447)
2025-11-21 09:55:00 (10552): Preference change detected
2025-11-21 09:55:00 (10552): Setting CPU throttle for VM. (100%)
2025-11-21 09:55:01 (10552): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-21 09:55:02 (10552): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-21 09:55:02 (10552): Guest Log: BIOS: Booting from Hard Disk...
2025-11-21 09:55:05 (10552): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-21 09:55:05 (10552): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-21 09:55:05 (10552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-21 09:55:11 (10552): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-21 09:55:11 (10552): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-21 09:55:16 (10552): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-21 09:55:16 (10552): Guest Log: 00:00:00.000146 main     Log opened 2025-11-21T09:55:14.644988000Z
2025-11-21 09:55:16 (10552): Guest Log: 00:00:00.000239 main     OS Product: Linux
2025-11-21 09:55:16 (10552): Guest Log: 00:00:00.000266 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-21 09:55:16 (10552): Guest Log: 00:00:00.000287 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-21 09:55:16 (10552): Guest Log: 00:00:00.000317 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-21 09:55:16 (10552): Guest Log: 00:00:00.000317 main     Process ID: 1372
2025-11-21 09:55:16 (10552): Guest Log: 00:00:00.000318 main     Package type: LINUX_64BITS_GENERIC
2025-11-21 09:55:16 (10552): Guest Log: 00:00:00.001324 main     5.2.32 r132073 started. Verbose level = 0
2025-11-21 09:55:17 (10552): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-21 09:55:17 (10552): Guest Log: [INFO] Mounting shared directory
2025-11-21 09:55:17 (10552): Guest Log: [INFO] Checking for init_data.xml
2025-11-21 09:55:26 (10552): Guest Log: 00:00:10.018121 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 812 157 253 000ns (GuestNow=1 763 747 726 805 068 000 ns GuestLast=1 763 718 914 647 815 000 ns fSetTimeLastLoop=true )
2025-11-21 09:55:40 (10552): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-21 09:55:40 (10552): Guest Log: [INFO] Detected branch: prod
2025-11-21 09:55:42 (10552): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-21 09:55:42 (10552): Guest Log: Copying input files
2025-11-21 09:55:43 (10552): Guest Log: Copied input files into RunAtlas.
2025-11-21 09:55:43 (10552): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-21 09:55:43 (10552): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-21 09:55:43 (10552): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-21 09:55:43 (10552): Guest Log: Further information can be found at the LHC@home message board.
2025-11-21 09:56:51 (10552): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-21 09:56:53 (10552): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-21 09:56:53 (10552): Guest Log: 2.6.3.0 1662 1 32164 153138 4 1 3117639 4096000 0 65024 0 0 n/a 1 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-21 09:56:53 (10552): Guest Log: copied the webapp to /var/www
2025-11-21 09:56:53 (10552): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-21 09:56:53 (10552): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-21 09:56:56 (10552): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-21 09:56:56 (10552): Guest Log:  *** Starting ATLAS job. (PandaID=6892535066 taskID=47493029) ***
2025-11-21 11:35:13 (10552): Status Report: Elapsed Time: '6000.000000'
2025-11-21 11:35:13 (10552): Status Report: CPU Time: '9073.156250'
2025-11-21 13:16:00 (10552): Status Report: Elapsed Time: '12000.000000'
2025-11-21 13:16:00 (10552): Status Report: CPU Time: '56118.703125'
2025-11-21 14:56:48 (10552): Status Report: Elapsed Time: '18000.000000'
2025-11-21 14:56:48 (10552): Status Report: CPU Time: '103127.625000'
2025-11-21 16:37:36 (10552): Status Report: Elapsed Time: '24000.000000'
2025-11-21 16:37:36 (10552): Status Report: CPU Time: '150250.500000'
2025-11-21 18:18:25 (10552): Status Report: Elapsed Time: '30000.000000'
2025-11-21 18:18:25 (10552): Status Report: CPU Time: '197359.687500'
2025-11-21 19:59:14 (10552): Status Report: Elapsed Time: '36000.000000'
2025-11-21 19:59:14 (10552): Status Report: CPU Time: '244437.843750'
2025-11-21 21:40:03 (10552): Status Report: Elapsed Time: '42000.000000'
2025-11-21 21:40:03 (10552): Status Report: CPU Time: '291519.281250'
2025-11-21 23:20:53 (10552): Status Report: Elapsed Time: '48000.000000'
2025-11-21 23:20:53 (10552): Status Report: CPU Time: '338531.046875'
2025-11-21 23:52:10 (10552): Guest Log:  *** Job finished ***
2025-11-21 23:52:10 (10552): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:51:57,129 | INFO     | all workflow threads have been joined
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:51:57,130 | INFO     | end of generic workflow (traces error code: 0)
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:51:57,130 | INFO     | traces error code: 0
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:51:57,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,668 | INFO     | PID=6254 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,669 | INFO     | found 0 job(s) in 20 queues
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,670 | INFO     | [monitor] control thread has ended
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,778 [wrapper] ==== pilot stdout END ====
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,782 [wrapper] ==== wrapper stdout RESUME ====
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,787 [wrapper] pilotpid: 6254
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,791 [wrapper] Pilot exit status: 0
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,806 [wrapper] pandaids: 6892535066
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,835 [wrapper] cleanup supervisor_pilot  7749 6255
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,839 [wrapper] Test setup, not cleaning
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,844 [wrapper] apfmon messages muted
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,848 [wrapper] ==== wrapper stdout END ====
2025-11-21 23:52:10 (10552): Guest Log: 2025-11-22 07:52:08,852 [wrapper] ==== wrapper stderr END ====
2025-11-21 23:52:10 (10552): Guest Log:  *** Error codes and diagnostics ***
2025-11-21 23:52:10 (10552): Guest Log:     "exeErrorCode": 0,
2025-11-21 23:52:10 (10552): Guest Log:     "exeErrorDiag": "",
2025-11-21 23:52:10 (10552): Guest Log:     "pilotErrorCode": 0,
2025-11-21 23:52:10 (10552): Guest Log:     "pilotErrorDiag": "",
2025-11-21 23:52:10 (10552): Guest Log:  *** Listing of results directory ***
2025-11-21 23:52:10 (10552): Guest Log: total 910836
2025-11-21 23:52:10 (10552): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 19 07:27 queuedata.json
2025-11-21 23:52:10 (10552): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 19 07:27 pilot3.tar.gz
2025-11-21 23:52:10 (10552): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 19 07:27 runpilot2-wrapper.sh
2025-11-21 23:52:10 (10552): Guest Log: -rwxr-xr-x. 1 atlas atlas      9028 Nov 21 17:55 init_data.xml
2025-11-21 23:52:10 (10552): Guest Log: -rwxr-xr-x. 1 atlas atlas    590098 Nov 21 17:55 input.tar.gz
2025-11-21 23:52:10 (10552): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 21 17:55 start_atlas.sh
2025-11-21 23:52:10 (10552): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 21 17:55 EVNT.47493027._000194.pool.root.1 -> /data/./ATLAS.root_0
2025-11-21 23:52:10 (10552): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 21 17:56 pandaJob.out
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas    989798 Nov 21 18:10 agis_schedconf.cvmfs.json
2025-11-21 23:52:10 (10552): Guest Log: drwx------. 5 atlas atlas      4096 Nov 21 18:10 pilot3
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas 912212204 Nov 22 07:50 HITS.47493029._001896.pool.root.1
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas      1043 Nov 22 07:50 memory_monitor_summary.json
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 22 07:50 agis_ddmendpoints.agis.ALL.json
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas   2000539 Nov 22 07:50 log.47493029._001896.job.log.tgz.1
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas      8642 Nov 22 07:51 heartbeat.json
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas       744 Nov 22 07:52 pilotlog.txt
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas        95 Nov 22 07:52 pilot_heartbeat.json
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas   6317401 Nov 22 07:52 log.47493029._001896.job.log.1
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas       353 Nov 22 07:52 output.list
2025-11-21 23:52:10 (10552): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 22 07:52 runtime_log
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas   8335360 Nov 22 07:52 result.tar.gz
2025-11-21 23:52:10 (10552): Guest Log: -rw-r--r--. 1 atlas atlas      8648 Nov 22 07:52 runtime_log.err
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas       670 Nov 22 07:52 FjIODmhmrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoqGKDmsVt7dn.diag
2025-11-21 23:52:10 (10552): Guest Log: Looking for outputfile HITS.47493029._001896.pool.root.1
2025-11-21 23:52:10 (10552): Guest Log: HITS file was successfully produced
2025-11-21 23:52:10 (10552): Guest Log: -rw-------. 1 atlas atlas 912212204 Nov 22 07:50 /home/atlas/RunAtlas/HITS.47493029._001896.pool.root.1
2025-11-21 23:52:14 (10552): Guest Log: Successfully finished the ATLAS job!
2025-11-21 23:52:14 (10552): Guest Log: Copying the results back to the shared directory!
2025-11-21 23:52:14 (10552): Guest Log:  *** Contents of shared directory: ***
2025-11-21 23:52:14 (10552): Guest Log: total 1298532
2025-11-21 23:52:14 (10552): Guest Log: -rwxrwxrwx. 1 root root 408519214 Nov 21 17:54 ATLAS.root_0
2025-11-21 23:52:14 (10552): Guest Log: -rwxrwxrwx. 1 root root 912212204 Nov 22 07:52 HITS.pool.root.1
2025-11-21 23:52:14 (10552): Guest Log: -rwxrwxrwx. 1 root root      9028 Nov 21 17:54 init_data.xml
2025-11-21 23:52:14 (10552): Guest Log: -rwxrwxrwx. 1 root root    590098 Nov 19 09:14 input.tar.gz
2025-11-21 23:52:14 (10552): Guest Log: -rwxrwxrwx. 1 root root   8335360 Nov 22 07:52 result.tar.gz
2025-11-21 23:52:14 (10552): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 09:14 start_atlas.sh
2025-11-21 23:52:14 (10552): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-21 23:52:14 (10552): VM Completion File Detected.
2025-11-21 23:52:14 (10552): Powering off VM.
2025-11-21 23:52:15 (10552): Successfully stopped VM.
2025-11-21 23:52:15 (10552): Deregistering VM. (boinc_62e9e40f8069250f, slot#1)
2025-11-21 23:52:15 (10552): Removing network bandwidth throttle group from VM.
2025-11-21 23:52:15 (10552): Removing VM from VirtualBox.
2025-11-21 23:52:20 (10552): called boinc_finish(0)

</stderr_txt>
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