Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-19 15:55:09 (12844): vboxwrapper version 26210
2025-11-19 15:55:09 (12844): BOINC client version: 8.0.2
2025-11-19 15:55:10 (12844): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2025-11-19 15:55:10 (12844): Successfully copied 'init_data.xml' to the shared directory.
2025-11-19 15:55:10 (12844): Create VM. (boinc_405b1c0703806174, slot#1)
2025-11-19 15:55:11 (12844): Setting Memory Size for VM. (4800MB)
2025-11-19 15:55:11 (12844): Setting CPU Count for VM. (8)
2025-11-19 15:55:11 (12844): Setting Chipset Options for VM.
2025-11-19 15:55:12 (12844): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-19 15:55:12 (12844): Setting Boot Options for VM.
2025-11-19 15:55:12 (12844): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-19 15:55:13 (12844): Enabling VM Network Access.
2025-11-19 15:55:13 (12844): Disabling USB Support for VM.
2025-11-19 15:55:13 (12844): Disabling COM Port Support for VM.
2025-11-19 15:55:13 (12844): Disabling LPT Port Support for VM.
2025-11-19 15:55:14 (12844): Disabling Audio Support for VM.
2025-11-19 15:55:14 (12844): Disabling Clipboard Support for VM.
2025-11-19 15:55:14 (12844): Disabling Drag and Drop Support for VM.
2025-11-19 15:55:14 (12844): Adding storage controller(s) to VM.
2025-11-19 15:55:15 (12844): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-19 15:55:17 (12844): Adding VirtualBox Guest Additions to VM.
2025-11-19 15:55:17 (12844): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-19 15:55:17 (12844): forwarding host port 63929 to guest port 80
2025-11-19 15:55:18 (12844): Enabling remote desktop for VM.
2025-11-19 15:55:18 (12844): Required extension pack not installed, remote desktop not enabled.
2025-11-19 15:55:18 (12844): Enabling shared directory for VM.
2025-11-19 15:55:18 (12844): Starting VM using VBoxManage interface. (boinc_405b1c0703806174, slot#1)
2025-11-19 15:55:24 (12844): Successfully started VM. (PID = '2516')
2025-11-19 15:55:24 (12844): Reporting VM Process ID to BOINC.
2025-11-19 15:55:24 (12844): Guest Log: BIOS: VirtualBox 7.1.0
2025-11-19 15:55:24 (12844): Guest Log: CPUID EDX: 0x178bfbff
2025-11-19 15:55:24 (12844): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-19 15:55:24 (12844): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-19 15:55:24 (12844): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-19 15:55:24 (12844): Detected: Web Application Enabled (http://localhost:63929)
2025-11-19 15:55:24 (12844): Preference change detected
2025-11-19 15:55:24 (12844): Setting CPU throttle for VM. (100%)
2025-11-19 15:55:24 (12844): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-19 15:55:26 (12844): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-19 15:55:26 (12844): Guest Log: BIOS: Booting from Hard Disk...
2025-11-19 15:55:28 (12844): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-19 15:55:28 (12844): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-19 15:55:28 (12844): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-19 15:55:35 (12844): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-19 15:55:35 (12844): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-19 15:55:40 (12844): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-19 15:55:40 (12844): Guest Log: 00:00:00.000163 main     Log opened 2025-11-19T15:55:38.376001000Z
2025-11-19 15:55:40 (12844): Guest Log: 00:00:00.000254 main     OS Product: Linux
2025-11-19 15:55:40 (12844): Guest Log: 00:00:00.000279 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-19 15:55:40 (12844): Guest Log: 00:00:00.000300 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-19 15:55:40 (12844): Guest Log: 00:00:00.000322 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-19 15:55:40 (12844): Guest Log: 00:00:00.000322 main     Process ID: 1381
2025-11-19 15:55:40 (12844): Guest Log: 00:00:00.000323 main     Package type: LINUX_64BITS_GENERIC
2025-11-19 15:55:40 (12844): Guest Log: 00:00:00.001242 main     5.2.32 r132073 started. Verbose level = 0
2025-11-19 15:55:40 (12844): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-19 15:55:40 (12844): Guest Log: [INFO] Mounting shared directory
2025-11-19 15:55:40 (12844): Guest Log: [INFO] Checking for init_data.xml
2025-11-19 15:55:50 (12844): Guest Log: 00:00:10.002888 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 811 700 030 000ns (GuestNow=1 763 596 550 078 277 000 ns GuestLast=1 763 567 738 378 247 000 ns fSetTimeLastLoop=true )
2025-11-19 15:56:05 (12844): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-19 15:56:05 (12844): Guest Log: [INFO] Detected branch: prod
2025-11-19 15:56:07 (12844): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-19 15:56:07 (12844): Guest Log: Copying input files
2025-11-19 15:56:09 (12844): Guest Log: Copied input files into RunAtlas.
2025-11-19 15:56:09 (12844): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-19 15:56:09 (12844): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-19 15:56:09 (12844): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-19 15:56:09 (12844): Guest Log: Further information can be found at the LHC@home message board.
2025-11-19 15:56:28 (12844): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-19 15:56:30 (12844): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-19 15:56:30 (12844): Guest Log: 2.6.3.0 1684 0 32172 153062 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-19 15:56:30 (12844): Guest Log: copied the webapp to /var/www
2025-11-19 15:56:30 (12844): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-19 15:56:30 (12844): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-19 15:56:44 (12844): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-19 15:56:44 (12844): Guest Log:  *** Starting ATLAS job. (PandaID=6892534819 taskID=47493029) ***
2025-11-19 17:35:38 (12844): Status Report: Elapsed Time: '6000.000000'
2025-11-19 17:35:38 (12844): Status Report: CPU Time: '11779.203125'
2025-11-19 19:16:24 (12844): Status Report: Elapsed Time: '12000.000000'
2025-11-19 19:16:24 (12844): Status Report: CPU Time: '58667.906250'
2025-11-19 20:57:11 (12844): Status Report: Elapsed Time: '18000.000000'
2025-11-19 20:57:11 (12844): Status Report: CPU Time: '105623.171875'
2025-11-19 22:37:58 (12844): Status Report: Elapsed Time: '24000.000000'
2025-11-19 22:37:58 (12844): Status Report: CPU Time: '152613.203125'
2025-11-20 00:18:45 (12844): Status Report: Elapsed Time: '30000.000000'
2025-11-20 00:18:45 (12844): Status Report: CPU Time: '199592.656250'
2025-11-20 01:59:31 (12844): Status Report: Elapsed Time: '36000.000000'
2025-11-20 01:59:31 (12844): Status Report: CPU Time: '246591.625000'
2025-11-20 03:40:33 (12844): Status Report: Elapsed Time: '42000.072390'
2025-11-20 03:40:33 (12844): Status Report: CPU Time: '293724.812500'
2025-11-20 05:21:18 (12844): Status Report: Elapsed Time: '48000.072390'
2025-11-20 05:21:18 (12844): Status Report: CPU Time: '340693.343750'
2025-11-20 05:49:32 (12844): Guest Log:  *** Job finished ***
2025-11-20 05:49:32 (12844): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,285 | INFO     | PID=6258 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,286 | INFO     | found 0 job(s) in 20 queues
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,286 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,286 | INFO     | [monitor] control thread has ended
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,376 | INFO     | all workflow threads have been joined
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,377 | INFO     | end of generic workflow (traces error code: 0)
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,377 | INFO     | traces error code: 0
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,493 [wrapper] ==== pilot stdout END ====
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,498 [wrapper] ==== wrapper stdout RESUME ====
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,503 [wrapper] pilotpid: 6258
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,507 [wrapper] Pilot exit status: 0
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,524 [wrapper] pandaids: 6892534819
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,554 [wrapper] cleanup supervisor_pilot  4972 6259
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,562 [wrapper] Test setup, not cleaning
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,566 [wrapper] apfmon messages muted
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,570 [wrapper] ==== wrapper stdout END ====
2025-11-20 05:49:32 (12844): Guest Log: 2025-11-20 13:49:29,575 [wrapper] ==== wrapper stderr END ====
2025-11-20 05:49:32 (12844): Guest Log:  *** Error codes and diagnostics ***
2025-11-20 05:49:32 (12844): Guest Log:     "exeErrorCode": 0,
2025-11-20 05:49:32 (12844): Guest Log:     "exeErrorDiag": "",
2025-11-20 05:49:32 (12844): Guest Log:     "pilotErrorCode": 0,
2025-11-20 05:49:32 (12844): Guest Log:     "pilotErrorDiag": "",
2025-11-20 05:49:32 (12844): Guest Log:  *** Listing of results directory ***
2025-11-20 05:49:32 (12844): Guest Log: total 911236
2025-11-20 05:49:32 (12844): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 19 07:27 queuedata.json
2025-11-20 05:49:33 (12844): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 19 07:27 runpilot2-wrapper.sh
2025-11-20 05:49:33 (12844): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 19 07:27 pilot3.tar.gz
2025-11-20 05:49:33 (12844): Guest Log: -rwxr-xr-x. 1 atlas atlas      9027 Nov 19 23:56 init_data.xml
2025-11-20 05:49:33 (12844): Guest Log: -rwxr-xr-x. 1 atlas atlas    590087 Nov 19 23:56 input.tar.gz
2025-11-20 05:49:33 (12844): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 19 23:56 start_atlas.sh
2025-11-20 05:49:33 (12844): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 19 23:56 EVNT.47493027._000180.pool.root.1 -> /data/./ATLAS.root_0
2025-11-20 05:49:33 (12844): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 19 23:56 pandaJob.out
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas    989435 Nov 20 00:07 agis_schedconf.cvmfs.json
2025-11-20 05:49:33 (12844): Guest Log: drwx------. 5 atlas atlas      4096 Nov 20 00:08 pilot3
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas 912601594 Nov 20 13:47 HITS.47493029._001756.pool.root.1
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas      1051 Nov 20 13:47 memory_monitor_summary.json
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 20 13:48 agis_ddmendpoints.agis.ALL.json
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas   2009983 Nov 20 13:48 log.47493029._001756.job.log.tgz.1
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas        95 Nov 20 13:48 pilot_heartbeat.json
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas      8659 Nov 20 13:48 heartbeat.json
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 20 13:49 pilotlog.txt
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas   6311850 Nov 20 13:49 log.47493029._001756.job.log.1
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas       353 Nov 20 13:49 output.list
2025-11-20 05:49:33 (12844): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 20 13:49 runtime_log
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas   8345600 Nov 20 13:49 result.tar.gz
2025-11-20 05:49:33 (12844): Guest Log: -rw-r--r--. 1 atlas atlas      8648 Nov 20 13:49 runtime_log.err
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas       670 Nov 20 13:49 IqxKDmhmrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqpGKDmBEGTtn.diag
2025-11-20 05:49:33 (12844): Guest Log: Looking for outputfile HITS.47493029._001756.pool.root.1
2025-11-20 05:49:33 (12844): Guest Log: HITS file was successfully produced
2025-11-20 05:49:33 (12844): Guest Log: -rw-------. 1 atlas atlas 912601594 Nov 20 13:47 /home/atlas/RunAtlas/HITS.47493029._001756.pool.root.1
2025-11-20 05:49:35 (12844): Guest Log: Successfully finished the ATLAS job!
2025-11-20 05:49:35 (12844): Guest Log: Copying the results back to the shared directory!
2025-11-20 05:49:35 (12844): Guest Log:  *** Contents of shared directory: ***
2025-11-20 05:49:35 (12844): Guest Log: total 1302320
2025-11-20 05:49:35 (12844): Guest Log: -rwxrwxrwx. 1 root root 411999864 Nov 19 23:55 ATLAS.root_0
2025-11-20 05:49:35 (12844): Guest Log: -rwxrwxrwx. 1 root root 912601594 Nov 20 13:49 HITS.pool.root.1
2025-11-20 05:49:35 (12844): Guest Log: -rwxrwxrwx. 1 root root      9027 Nov 19 23:55 init_data.xml
2025-11-20 05:49:35 (12844): Guest Log: -rwxrwxrwx. 1 root root    590087 Nov 19 09:16 input.tar.gz
2025-11-20 05:49:35 (12844): Guest Log: -rwxrwxrwx. 1 root root   8345600 Nov 20 13:49 result.tar.gz
2025-11-20 05:49:35 (12844): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 09:16 start_atlas.sh
2025-11-20 05:49:35 (12844): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-20 05:49:35 (12844): VM Completion File Detected.
2025-11-20 05:49:35 (12844): Powering off VM.
2025-11-20 05:49:37 (12844): Successfully stopped VM.
2025-11-20 05:49:37 (12844): Deregistering VM. (boinc_405b1c0703806174, slot#1)
2025-11-20 05:49:37 (12844): Removing network bandwidth throttle group from VM.
2025-11-20 05:49:37 (12844): Removing VM from VirtualBox.
2025-11-20 05:49:42 (12844): called boinc_finish(0)

</stderr_txt>
]]>

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