Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:07:32 (3960302): wrapper (7.7.26015): starting
01:07:32 (3960302): wrapper: running run_atlas (--nthreads 12)
[2025-11-19 01:07:32] Arguments: --nthreads 12
[2025-11-19 01:07:32] Threads: 12
[2025-11-19 01:07:32] Checking for CVMFS
[2025-11-19 01:07:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 01:07:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 01:07:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 01:07:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 01:07:33] 2.11.5.0 2081521 18061 252616 153036 1 710 43465258 45568000 13635 130560 0 109665582 99.795 62850497 16812 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-19 01:07:33] CVMFS is ok
[2025-11-19 01:07:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 01:07:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 01:07:33] Further information can be found at the LHC@home message board.
[2025-11-19 01:07:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 01:07:33] Checking for apptainer binary...
[2025-11-19 01:07:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 01:07:33] Running /usr/bin/apptainer --version
[2025-11-19 01:07:33] apptainer version 1.4.1-1.el9
[2025-11-19 01:07:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 01:07:34] wns0041.triumf.lcg
[2025-11-19 01:07:34] apptainer works
[2025-11-19 01:07:34] Set ATHENA_PROC_NUMBER=12
[2025-11-19 01:07:34] Set ATHENA_CORE_NUMBER=12
[2025-11-19 01:07:34] Starting ATLAS job with PandaID=6892537123
[2025-11-19 01:07:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 01:14:04]  *** The last 200 lines of the pilot log: ***
[2025-11-19 01:14:04] 2025-11-19 09:13:07,047 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 01:14:04] 2025-11-19 09:13:07,074 | WARNING  | wrong length of table data, x=[1763543340.0, 1763543401.0], y=[921.0, 804521.0] (must be same and length>=4)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | could have reported an average CPU frequency of 1316 MHz (4 samples)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | ..............................
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | . Timing measurements:
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | . get job = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . initial setup = 3 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . payload setup = 20 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . stage-in = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . payload execution = 127 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . stage-out = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . log creation = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | ..............................
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 01:14:04] 2025-11-19 09:13:07,077 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892537123/pilotlog.txt
[2025-11-19 01:14:04] 2025-11-19 09:13:07,094 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-19 01:14:04] - Log from pilotlog.txt -
[2025-11-19 01:14:04] 2025-11-19 09:13:07,044 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892537123/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,046 | INFO     | extracted standard info from prmon json
[2025-11-19 01:14:04] 2025-11-19 09:13:07,046 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 01:14:04] 2025-11-19 09:13:07,047 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 01:14:04] 2025-11-19 09:13:07,047 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 01:14:04] 2025-11-19 09:13:07,047 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 01:14:04] 2025-11-19 09:13:07,074 | WARNING  | wrong length of table data, x=[1763543340.0, 1763543401.0], y=[921.0, 804521.0] (must be same and length>=4)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | could have reported an average CPU frequency of 1316 MHz (4 samples)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | ..............................
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | . Timing measurements:
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | . get job = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . initial setup = 3 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . payload setup = 20 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . stage-in = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . payload execution = 127 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . stage-out = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . log creation = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | ..............................
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 01:14:04] 2025-11-19 09:13:07,077 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892537123/pilotlog.txt
[2025-11-19 01:14:04] 2025-11-19 09:13:07,094 | WARNING  | 
[2025-11-19 01:14:04] [begin log extracts]
[2025-11-19 01:14:04] - Log from pilotlog.txt -
[2025-11-19 01:14:04] 2025-11-19 09:13:07,044 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892537123/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,046 | INFO     | extracted standard info from prmon json
[2025-11-19 01:14:04] 2025-11-19 09:13:07,046 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 01:14:04] 2025-11-19 09:13:07,047 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 01:14:04] 2025-11-19 09:13:07,047 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 01:14:04] 2025-11-19 09:13:07,047 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 01:14:04] 2025-11-19 09:13:07,074 | WARNING  | wrong length of table data, x=[1763543340.0, 1763543401.0], y=[921.0, 804521.0] (must be same and length>=4)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | could have reported an average CPU frequency of 1316 MHz (4 samples)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | ..............................
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | . Timing measurements:
[2025-11-19 01:14:04] 2025-11-19 09:13:07,075 | INFO     | . get job = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . initial setup = 3 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . payload setup = 20 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . stage-in = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . payload execution = 127 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . stage-out = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | . log creation = 0 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | ..............................
[2025-11-19 01:14:04] 2025-11-19 09:13:07,076 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 01:14:04] 2025-11-19 09:13:07,077 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892537123/pilotlog.txt
[2025-11-19 01:14:04] [end log extracts]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,095 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,096 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-19 01:14:04] 2025-11-19 09:13:07,582 | INFO     | 
[2025-11-19 01:14:04] 2025-11-19 09:13:07,582 | INFO     | job summary report
[2025-11-19 01:14:04] 2025-11-19 09:13:07,582 | INFO     | --------------------------------------------------
[2025-11-19 01:14:04] 2025-11-19 09:13:07,582 | INFO     | PanDA job id: 6892537123
[2025-11-19 01:14:04] 2025-11-19 09:13:07,582 | INFO     | task id: 47493029
[2025-11-19 01:14:04] 2025-11-19 09:13:07,582 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-19 01:10:47,765 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | pilot state: failed 
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | transexitcode: 65
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | exeerrorcode: 65
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | exitcode: 65
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | cpuconsumptiontime: 73 s
[2025-11-19 01:14:04] 2025-11-19 09:13:07,583 | INFO     | nevents: 0
[2025-11-19 01:14:04] 2025-11-19 09:13:07,584 | INFO     | neventsw: 0
[2025-11-19 01:14:04] 2025-11-19 09:13:07,584 | INFO     | pid: 3970551
[2025-11-19 01:14:04] 2025-11-19 09:13:07,584 | INFO     | pgrp: 3970551
[2025-11-19 01:14:04] 2025-11-19 09:13:07,584 | INFO     | corecount: 12
[2025-11-19 01:14:04] 2025-11-19 09:13:07,584 | INFO     | event service: False
[2025-11-19 01:14:04] 2025-11-19 09:13:07,584 | INFO     | sizes: {0: 2296964, 1: 2297219, 2: 2297219, 11: 2297509, 12: 2297537, 152: 2323184, 153: 2327502, 284: 2327640}
[2025-11-19 01:14:04] 2025-11-19 09:13:07,584 | INFO     | --------------------------------------------------
[2025-11-19 01:14:04] 2025-11-19 09:13:07,584 | INFO     | 
[2025-11-19 01:14:04] 2025-11-19 09:13:07,584 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-19 01:14:04] 2025-11-19 09:13:07,609 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,610 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,610 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,612 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 01:14:04] 2025-11-19 09:13:07,612 | INFO     | job 6892537123 has completed (purged errors)
[2025-11-19 01:14:04] 2025-11-19 09:13:07,612 | INFO     | overall cleanup function is called
[2025-11-19 01:14:04] 2025-11-19 09:13:08,635 | INFO     | --- collectZombieJob: --- 10, [3970551]
[2025-11-19 01:14:04] 2025-11-19 09:13:08,635 | INFO     | zombie collector waiting for pid 3970551
[2025-11-19 01:14:04] 2025-11-19 09:13:08,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 01:14:04] 2025-11-19 09:13:08,636 | INFO     | collected zombie processes
[2025-11-19 01:14:04] 2025-11-19 09:13:08,636 | INFO     | will attempt to kill all subprocesses of pid=3970551
[2025-11-19 01:14:04] 2025-11-19 09:13:09,279 | INFO     | process IDs to be killed: [3970551] (in reverse order)
[2025-11-19 01:14:04] 2025-11-19 09:13:09,380 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 01:14:04] 2025-11-19 09:13:09,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 01:14:04] 2025-11-19 09:13:09,404 | INFO     | did not find any defunct processes belonging to 3970551
[2025-11-19 01:14:04] 2025-11-19 09:13:09,414 | INFO     | did not find any defunct processes belonging to 3970551
[2025-11-19 01:14:04] 2025-11-19 09:13:09,416 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 01:14:04] 2025-11-19 09:13:09,416 | INFO     | ready for new job
[2025-11-19 01:14:04] 2025-11-19 09:13:09,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 01:14:04] 2025-11-19 09:13:09,419 | INFO     | ***************************************
[2025-11-19 01:14:04] 2025-11-19 09:13:09,419 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 01:14:04] 2025-11-19 09:13:09,419 | INFO     | ***************************************
[2025-11-19 01:14:04] 2025-11-19 09:13:09,419 | INFO     | 
[2025-11-19 01:14:04] 2025-11-19 09:13:09,423 | INFO     | architecture information:
[2025-11-19 01:14:04] 2025-11-19 09:13:09,424 | INFO     | executing command: cat /etc/os-release
[2025-11-19 01:14:04] 2025-11-19 09:13:09,444 | INFO     | cat /etc/os-release:
[2025-11-19 01:14:04] NAME="CentOS Linux"
[2025-11-19 01:14:04] VERSION="7 (Core)"
[2025-11-19 01:14:04] ID="centos"
[2025-11-19 01:14:04] ID_LIKE="rhel fedora"
[2025-11-19 01:14:04] VERSION_ID="7"
[2025-11-19 01:14:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 01:14:04] ANSI_COLOR="0;31"
[2025-11-19 01:14:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 01:14:04] HOME_URL="https://www.centos.org/"
[2025-11-19 01:14:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 01:14:04] 
[2025-11-19 01:14:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 01:14:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 01:14:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 01:14:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 01:14:04] 
[2025-11-19 01:14:04] 2025-11-19 09:13:09,444 | INFO     | ***************************************
[2025-11-19 01:14:04] 2025-11-19 09:13:09,948 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-19 01:14:04] 2025-11-19 09:13:09,976 | INFO     | sufficient remaining disk space (2019318300672 B)
[2025-11-19 01:14:04] 2025-11-19 09:13:09,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 01:14:04] 2025-11-19 09:13:09,976 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 01:14:04] 2025-11-19 09:13:09,976 | INFO     | update_server=False
[2025-11-19 01:14:04] 2025-11-19 09:13:09,977 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 01:14:04] 2025-11-19 09:13:09,977 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 01:14:04] 2025-11-19 09:13:09,978 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 01:14:04] 2025-11-19 09:13:09,979 | INFO     | aborting loop
[2025-11-19 01:14:04] 2025-11-19 09:13:10,274 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 01:14:04] 2025-11-19 09:13:10,336 | INFO     | all payload control threads have been joined
[2025-11-19 01:14:04] 2025-11-19 09:13:10,547 | INFO     | all data control threads have been joined
[2025-11-19 01:14:04] 2025-11-19 09:13:10,640 | INFO     | all job control threads have been joined
[2025-11-19 01:14:04] 2025-11-19 09:13:10,983 | INFO     | [job] retrieve thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:10,987 | INFO     | [job] job monitor thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:11,328 | INFO     | [data] copytool_in thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:11,330 | INFO     | [payload] validate_post thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:11,342 | INFO     | [payload] control thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:11,553 | INFO     | [data] control thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:11,611 | INFO     | [job] validate thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:11,633 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:11,646 | INFO     | [job] control thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:11,926 | INFO     | [payload] failed_post thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:12,232 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:12,236 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:12,236 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:12,281 | INFO     | [data] copytool_out thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:12,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 01:14:04] 2025-11-19 09:13:13,608 | INFO     | [job] queue monitor thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:13,986 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 01:14:04] 2025-11-19 09:13:41,207 | INFO     | PID=3963982 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 01:14:04] 2025-11-19 09:13:41,216 | INFO     | .. there are 14 such processes running
[2025-11-19 01:14:04] 2025-11-19 09:13:41,216 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 01:14:04] 2025-11-19 09:13:41,216 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 01:14:04] 2025-11-19 09:13:41,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 01:14:04] 2025-11-19 09:13:58,129 | INFO     | [monitor] cgroup control has ended
[2025-11-19 01:14:04] 2025-11-19 09:13:59,184 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178745136960)>', '<ExcThread(monitor, started 140178425353984)>']
[2025-11-19 01:14:04] 2025-11-19 09:13:59,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 01:14:04] 2025-11-19 09:13:59,323 | INFO     | [monitor] control thread has ended
[2025-11-19 01:14:04] 2025-11-19 09:14:04,210 | INFO     | all workflow threads have been joined
[2025-11-19 01:14:04] 2025-11-19 09:14:04,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 01:14:04] 2025-11-19 09:14:04,211 | INFO     | traces error code: 0
[2025-11-19 01:14:04] 2025-11-19 09:14:04,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 01:14:04] 2025-11-19 09:14:04,398 [wrapper] ==== pilot stdout END ====
[2025-11-19 01:14:04] 2025-11-19 09:14:04,402 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 01:14:04] 2025-11-19 09:14:04,405 [wrapper] pilotpid: 3963982
[2025-11-19 01:14:04] 2025-11-19 09:14:04,408 [wrapper] Pilot exit status: 0
[2025-11-19 01:14:04] 2025-11-19 09:14:04,425 [wrapper] pandaids: 6892537123
[2025-11-19 01:14:04] 2025-11-19 09:14:04,493 [wrapper] cleanup supervisor_pilot 3963988 3963983
[2025-11-19 01:14:04] 2025-11-19 09:14:04,496 [wrapper] Test setup, not cleaning
[2025-11-19 01:14:04] 2025-11-19 09:14:04,500 [wrapper] apfmon messages muted
[2025-11-19 01:14:04] 2025-11-19 09:14:04,503 [wrapper] ==== wrapper stdout END ====
[2025-11-19 01:14:04] 2025-11-19 09:14:04,506 [wrapper] ==== wrapper stderr END ====
[2025-11-19 01:14:04]  *** Error codes and diagnostics ***
[2025-11-19 01:14:04]     "exeErrorCode": 65,
[2025-11-19 01:14:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-19 01:14:04]     "pilotErrorCode": 1305,
[2025-11-19 01:14:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-19 01:14:04]  *** Listing of results directory ***
[2025-11-19 01:14:04] total 404440
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc      5112 Nov 18 23:27 queuedata.json
[2025-11-19 01:14:04] -rwx------. 1 boinc boinc     36292 Nov 18 23:27 runpilot2-wrapper.sh
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc    576529 Nov 18 23:27 pilot3.tar.gz
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc       100 Nov 19 01:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 01:14:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 01:07 run_atlas
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc       105 Nov 19 01:07 job.xml
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc      6595 Nov 19 01:07 init_data.xml
[2025-11-19 01:14:04] -rw-r--r--. 2 boinc boinc 409920514 Nov 19 01:07 EVNT.47493027._000208.pool.root.1
[2025-11-19 01:14:04] -rw-r--r--. 2 boinc boinc     15120 Nov 19 01:07 start_atlas.sh
[2025-11-19 01:14:04] drwxrwx--x. 2 boinc boinc      4096 Nov 19 01:07 shared
[2025-11-19 01:14:04] -rw-r--r--. 2 boinc boinc    590096 Nov 19 01:07 input.tar.gz
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc         0 Nov 19 01:07 boinc_lockfile
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc      2770 Nov 19 01:07 pandaJob.out
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc    989279 Nov 19 01:07 agis_schedconf.cvmfs.json
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc   1525063 Nov 19 01:07 agis_ddmendpoints.agis.ALL.json
[2025-11-19 01:14:04] drwx------. 5 boinc boinc      4096 Nov 19 01:07 pilot3
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc       524 Nov 19 01:10 boinc_task_state.xml
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc       989 Nov 19 01:10 memory_monitor_summary.json
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc     49455 Nov 19 01:10 log.47493029._002031.job.log.tgz.1
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc        95 Nov 19 01:12 pilot_heartbeat.json
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc     10337 Nov 19 01:13 heartbeat.json
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc      8192 Nov 19 01:14 boinc_mmap_file
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc        23 Nov 19 01:14 wrapper_checkpoint.txt
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc      4823 Nov 19 01:14 pilotlog.txt
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc    106440 Nov 19 01:14 log.47493029._002031.job.log.1
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc       186 Nov 19 01:14 output.list
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc       620 Nov 19 01:14 runtime_log
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc    174080 Nov 19 01:14 result.tar.gz
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc      8528 Nov 19 01:14 runtime_log.err
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc       644 Nov 19 01:14 kMPKDmhmrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmD0FKDmnWWYWm.diag
[2025-11-19 01:14:04] -rw-r--r--. 1 boinc boinc     22482 Nov 19 01:14 stderr.txt
[2025-11-19 01:14:04] No HITS result produced
[2025-11-19 01:14:04]  *** Contents of shared directory: ***
[2025-11-19 01:14:04] total 401084
[2025-11-19 01:14:04] -rw-r--r--. 2 boinc boinc 409920514 Nov 19 01:07 ATLAS.root_0
[2025-11-19 01:14:04] -rw-r--r--. 2 boinc boinc     15120 Nov 19 01:07 start_atlas.sh
[2025-11-19 01:14:04] -rw-r--r--. 2 boinc boinc    590096 Nov 19 01:07 input.tar.gz
[2025-11-19 01:14:04] -rw-------. 1 boinc boinc    174080 Nov 19 01:14 result.tar.gz
01:14:06 (3960302): run_atlas exited; CPU time 73.357304
01:14:06 (3960302): called boinc_finish(0)

</stderr_txt>
]]>

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