Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-19 04:54:43 (12860): vboxwrapper version 26210
2025-11-19 04:54:43 (12860): BOINC client version: 8.0.2
2025-11-19 04:54:44 (12860): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-19 04:54:44 (12860): Successfully copied 'init_data.xml' to the shared directory.
2025-11-19 04:54:44 (12860): Create VM. (boinc_faa33b6cc7fcdb64, slot#0)
2025-11-19 04:54:45 (12860): Setting Memory Size for VM. (4800MB)
2025-11-19 04:54:45 (12860): Setting CPU Count for VM. (8)
2025-11-19 04:54:45 (12860): Setting Chipset Options for VM.
2025-11-19 04:54:46 (12860): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-19 04:54:46 (12860): Setting Boot Options for VM.
2025-11-19 04:54:46 (12860): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-19 04:54:47 (12860): Enabling VM Network Access.
2025-11-19 04:54:47 (12860): Disabling USB Support for VM.
2025-11-19 04:54:47 (12860): Disabling COM Port Support for VM.
2025-11-19 04:54:47 (12860): Disabling LPT Port Support for VM.
2025-11-19 04:54:48 (12860): Disabling Audio Support for VM.
2025-11-19 04:54:48 (12860): Disabling Clipboard Support for VM.
2025-11-19 04:54:48 (12860): Disabling Drag and Drop Support for VM.
2025-11-19 04:54:49 (12860): Adding storage controller(s) to VM.
2025-11-19 04:54:49 (12860): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-19 04:54:51 (12860): Adding VirtualBox Guest Additions to VM.
2025-11-19 04:54:51 (12860): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-19 04:54:51 (12860): forwarding host port 64827 to guest port 80
2025-11-19 04:54:52 (12860): Enabling remote desktop for VM.
2025-11-19 04:54:52 (12860): Enabling shared directory for VM.
2025-11-19 04:54:53 (12860): Starting VM using VBoxManage interface. (boinc_faa33b6cc7fcdb64, slot#0)
2025-11-19 04:54:59 (12860): Successfully started VM. (PID = '21972')
2025-11-19 04:54:59 (12860): Reporting VM Process ID to BOINC.
2025-11-19 04:54:59 (12860): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-19 04:54:59 (12860): Guest Log: CPUID EDX: 0x178bfbff
2025-11-19 04:54:59 (12860): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-19 04:54:59 (12860): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-19 04:54:59 (12860): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-19 04:54:59 (12860): Detected: Web Application Enabled (http://localhost:64827)
2025-11-19 04:54:59 (12860): Detected: Remote Desktop Enabled (localhost:64828)
2025-11-19 04:54:59 (12860): Preference change detected
2025-11-19 04:54:59 (12860): Setting CPU throttle for VM. (70%)
2025-11-19 04:54:59 (12860): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-19 04:55:01 (12860): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-19 04:55:01 (12860): Guest Log: BIOS: Booting from Hard Disk...
2025-11-19 04:55:04 (12860): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-19 04:55:04 (12860): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-19 04:55:04 (12860): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-19 04:55:09 (12860): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-19 04:55:09 (12860): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-19 04:55:16 (12860): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-19 04:55:16 (12860): Guest Log: 00:00:00.000176 main     Log opened 2025-11-19T04:55:14.210216000Z
2025-11-19 04:55:16 (12860): Guest Log: 00:00:00.000285 main     OS Product: Linux
2025-11-19 04:55:16 (12860): Guest Log: 00:00:00.000319 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-19 04:55:16 (12860): Guest Log: 00:00:00.000347 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-19 04:55:16 (12860): Guest Log: 00:00:00.000374 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-19 04:55:16 (12860): Guest Log: 00:00:00.000374 main     Process ID: 1370
2025-11-19 04:55:16 (12860): Guest Log: 00:00:00.000375 main     Package type: LINUX_64BITS_GENERIC
2025-11-19 04:55:16 (12860): Guest Log: 00:00:00.001042 main     5.2.32 r132073 started. Verbose level = 0
2025-11-19 04:55:16 (12860): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-19 04:55:16 (12860): Guest Log: [INFO] Mounting shared directory
2025-11-19 04:55:16 (12860): Guest Log: [INFO] Checking for init_data.xml
2025-11-19 04:55:26 (12860): Guest Log: 00:00:10.003819 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 666 324 000ns (GuestNow=1 763 542 525 879 058 000 ns GuestLast=1 763 528 114 212 734 000 ns fSetTimeLastLoop=true )
2025-11-19 04:59:58 (12860): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-19 04:59:58 (12860): Guest Log: [INFO] Detected branch: prod
2025-11-19 05:01:27 (12860): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-19 05:01:27 (12860): Guest Log: Copying input files
2025-11-19 05:01:29 (12860): Guest Log: Copied input files into RunAtlas.
2025-11-19 05:01:29 (12860): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-19 05:01:29 (12860): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-19 05:01:29 (12860): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-19 05:01:29 (12860): Guest Log: Further information can be found at the LHC@home message board.
2025-11-19 05:04:54 (12860): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-19 05:05:04 (12860): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-19 05:05:04 (12860): Guest Log: 2.6.3.0 1728 7 31744 153036 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
2025-11-19 05:05:04 (12860): Guest Log: copied the webapp to /var/www
2025-11-19 05:05:04 (12860): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-19 05:05:04 (12860): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-19 05:05:50 (12860): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-19 05:05:50 (12860): Guest Log:  *** Starting ATLAS job. (PandaID=6892528469 taskID=47493029) ***
2025-11-19 06:35:00 (12860): Status Report: Elapsed Time: '6000.000000'
2025-11-19 06:35:00 (12860): Status Report: CPU Time: '24858.890625'
2025-11-19 08:15:00 (12860): Status Report: Elapsed Time: '12000.000000'
2025-11-19 08:15:00 (12860): Status Report: CPU Time: '60961.203125'
2025-11-19 09:55:00 (12860): Status Report: Elapsed Time: '18000.000000'
2025-11-19 09:55:00 (12860): Status Report: CPU Time: '97040.687500'
2025-11-19 11:35:00 (12860): Status Report: Elapsed Time: '24000.000000'
2025-11-19 11:35:00 (12860): Status Report: CPU Time: '133152.375000'
2025-11-19 13:15:01 (12860): Status Report: Elapsed Time: '30000.000000'
2025-11-19 13:15:01 (12860): Status Report: CPU Time: '169230.078125'
2025-11-19 14:46:26 (12860): Guest Log:  *** Job finished ***
2025-11-19 14:46:26 (12860): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:14,796 | INFO     | [job] control thread has finished
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:17,262 | INFO     | [data] queue_monitor thread has finished
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:19,148 | INFO     | [monitor] cgroup control has ended
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:20,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085938292544)>', '<ExcThread(monitor, started 140084921759488)>']
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:20,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:20,311 | INFO     | [monitor] control thread has ended
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,035 | INFO     | all workflow threads have been joined
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,035 | INFO     | end of generic workflow (traces error code: 0)
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,035 | INFO     | traces error code: 0
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,120 [wrapper] ==== pilot stdout END ====
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,139 [wrapper] ==== wrapper stdout RESUME ====
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,143 [wrapper] pilotpid: 15668
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,147 [wrapper] Pilot exit status: 0
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,161 [wrapper] pandaids: 6892528469
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,185 [wrapper] cleanup supervisor_pilot 14988 15669
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,189 [wrapper] Test setup, not cleaning
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,193 [wrapper] apfmon messages muted
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,197 [wrapper] ==== wrapper stdout END ====
2025-11-19 14:46:26 (12860): Guest Log: 2025-11-19 18:46:25,201 [wrapper] ==== wrapper stderr END ====
2025-11-19 14:46:26 (12860): Guest Log:  *** Error codes and diagnostics ***
2025-11-19 14:46:26 (12860): Guest Log:     "exeErrorCode": 0,
2025-11-19 14:46:26 (12860): Guest Log:     "exeErrorDiag": "",
2025-11-19 14:46:26 (12860): Guest Log:     "pilotErrorCode": 0,
2025-11-19 14:46:26 (12860): Guest Log:     "pilotErrorDiag": "",
2025-11-19 14:46:26 (12860): Guest Log:  *** Listing of results directory ***
2025-11-19 14:46:26 (12860): Guest Log: total 913148
2025-11-19 14:46:26 (12860): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 19 07:00 pilot3.tar.gz
2025-11-19 14:46:26 (12860): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 19 07:10 queuedata.json
2025-11-19 14:46:26 (12860): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 19 07:10 runpilot2-wrapper.sh
2025-11-19 14:46:26 (12860): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 19 09:01 start_atlas.sh
2025-11-19 14:46:26 (12860): Guest Log: -rwxr-xr-x. 1 atlas atlas    590101 Nov 19 09:01 input.tar.gz
2025-11-19 14:46:26 (12860): Guest Log: -rwxr-xr-x. 1 atlas atlas      9262 Nov 19 09:01 init_data.xml
2025-11-19 14:46:26 (12860): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 19 09:01 EVNT.47493027._000171.pool.root.1 -> /data/./ATLAS.root_0
2025-11-19 14:46:26 (12860): Guest Log: -rw-r--r--. 1 atlas atlas      2770 Nov 19 09:05 pandaJob.out
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas    989279 Nov 19 09:13 agis_schedconf.cvmfs.json
2025-11-19 14:46:26 (12860): Guest Log: drwx------. 5 atlas atlas      4096 Nov 19 09:13 pilot3
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas 918818293 Nov 19 18:45 HITS.47493029._001661.pool.root.1
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas      1042 Nov 19 18:45 memory_monitor_summary.json
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas        95 Nov 19 18:45 pilot_heartbeat.json
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas   1525063 Nov 19 18:45 agis_ddmendpoints.agis.ALL.json
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas   1829376 Nov 19 18:45 log.47493029._001661.job.log.tgz.1
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas      8641 Nov 19 18:46 heartbeat.json
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas      4798 Nov 19 18:46 pilotlog.txt
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas   4370277 Nov 19 18:46 log.47493029._001661.job.log.1
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas       353 Nov 19 18:46 output.list
2025-11-19 14:46:26 (12860): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 19 18:46 runtime_log
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas   6215680 Nov 19 18:46 result.tar.gz
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas       659 Nov 19 18:46 TThKDm3Vrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7wFKDmJd28Do.diag
2025-11-19 14:46:26 (12860): Guest Log: -rw-r--r--. 1 atlas atlas      8631 Nov 19 18:46 runtime_log.err
2025-11-19 14:46:26 (12860): Guest Log: Looking for outputfile HITS.47493029._001661.pool.root.1
2025-11-19 14:46:26 (12860): Guest Log: HITS file was successfully produced
2025-11-19 14:46:26 (12860): Guest Log: -rw-------. 1 atlas atlas 918818293 Nov 19 18:45 /home/atlas/RunAtlas/HITS.47493029._001661.pool.root.1
2025-11-19 14:46:30 (12860): Guest Log: Successfully finished the ATLAS job!
2025-11-19 14:46:30 (12860): Guest Log: Copying the results back to the shared directory!
2025-11-19 14:46:30 (12860): Guest Log:  *** Contents of shared directory: ***
2025-11-19 14:46:30 (12860): Guest Log: total 1305572
2025-11-19 14:46:30 (12860): Guest Log: -rwxrwxrwx. 1 root root 411244525 Nov 19 08:54 ATLAS.root_0
2025-11-19 14:46:30 (12860): Guest Log: -rwxrwxrwx. 1 root root 918818293 Nov 19 18:46 HITS.pool.root.1
2025-11-19 14:46:30 (12860): Guest Log: -rwxrwxrwx. 1 root root      9262 Nov 19 08:54 init_data.xml
2025-11-19 14:46:30 (12860): Guest Log: -rwxrwxrwx. 1 root root    590101 Nov 19 08:27 input.tar.gz
2025-11-19 14:46:30 (12860): Guest Log: -rwxrwxrwx. 1 root root   6215680 Nov 19 18:46 result.tar.gz
2025-11-19 14:46:30 (12860): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 08:27 start_atlas.sh
2025-11-19 14:46:30 (12860): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-19 14:46:30 (12860): VM Completion File Detected.
2025-11-19 14:46:30 (12860): Powering off VM.
2025-11-19 14:46:31 (12860): Successfully stopped VM.
2025-11-19 14:46:31 (12860): Deregistering VM. (boinc_faa33b6cc7fcdb64, slot#0)
2025-11-19 14:46:31 (12860): Removing network bandwidth throttle group from VM.
2025-11-19 14:46:32 (12860): Removing VM from VirtualBox.
2025-11-19 14:46:37 (12860): called boinc_finish(0)

</stderr_txt>
]]>

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